Lasketusaltaat maatalouden vesiensuojelussa

Laskeutusaltaiden käyttöä maatalousen vesiensuojelussa ravinteiden ja kiintoaineen pidättämiseen on Suomessa suositeltu jo muutaman vuode ajan. Vuodesta 1995 alkaen laskeutusaltaiden toteuttamiseen on myös voinut hakea maatalouden ympäristötuoen erityistukea. kokemukset laskeutusaltaiden käytöstä ja toimivuudesta ovat kuitenkin vielä toistaiseksi hyvin vähäiset niin Suomessa kuin muuallakin.

Efficient Algorithms for Coastal Geographic Problems

The increasing performance of computers has made it possible to solve algorithmically problems for which manual and possibly inaccurate methods have been previously used. Nevertheless, one must still pay attention to the performance of an algorithm if huge datasets are used or if the problem iscomputationally difficult. Two geographic problems are studied in the articles included in this thesis. In the first problem the goal is to determine distances from points, called study points, to shorelines in predefined directions. Together with other in-formation, mainly related to wind, these distances can be used to estimate wave exposure at different areas. In the second problem the input consists of a set of sites where water quality observations have been made and of the results of the measurements at the different sites. The goal is to select a subset of the observational sites in such a manner that water quality is still measured in a sufficient accuracy when monitoring at the other sites is stopped to reduce economic cost. Most of the thesis concentrates on the first problem, known as the fetch length problem. The main challenge is that the two-dimensional map is represented as a set of polygons with millions of vertices in total and the distances may also be computed for millions of study points in several directions. Efficient algorithms are developed for the problem, one of them approximate and the others exact except for rounding errors. The solutions also differ in that three of them are targeted for serial operation or for a small number of CPU cores whereas one, together with its further developments, is suitable also for parallel machines such as GPUs.

Grass-endophyte coevolution and ploidy levels in fescues

ABSTRACT Fescues consist of wild and cultivated grasses that have adapted to a wide range of environmental conditions. They are an excellent model species for evolutionary ecology studies that investigate symbiosis and polyploidization and their effects on plant performance. First, they are frequently infected with symbiotic endophytic fungi known to affect a plant’s ability to cope with biotic and abiotic environmental factors. Second, fescue species have been reported to have substantial intraspecific variation in their ploidy level and morphology. In my thesis, I examined large-scale generalizations for frequency of polyploidy and endophyte infections and their effects on plant morphology. As a model species, I selected red (Festuca rubra) and viviparous sheep’s (F. vivipara) fescues. They are closely related, but they differ in terms of distribution and endophyte infection frequency. I investigated the biogeographic pattern and population biology of 29 red and 12 viviparous sheep’s fescue populations across ≈300 latitudes in Europe (400-690 N). To examine plant ploidy levels, I implemented time- and cost-efficient plate-based high throughput flow cytometric analysis. This efficient procedure enabled me to analyze over 1000 red fescue individuals. I found three ploidy levels among them: overall 84 %, 9 % and 7 % of the red fescue plants were hexaploid, tetraploid and octoploid, respectively. However, all viviparous sheep’s fescue plants were tetraploid. Ploidy level of red fescue appeared to some extent follow gradients in latitude and primary production as suggested by previous studies, but these results could be explained better by taking the sampling design and local adaptation into account. Three Spanish populations were mostly tetraploids and one high elevation population in northernmost Finland (Halti) was octoploid, while most other populations (25 sites) were dominated by hexaploids. Endophyte infection frequencies of wild fescue populations varied from 0 to 81 % in red fescue populations and from 0 to 30 % in viviparous sheep’s fescue populations. No gradients with latitude or primary production of the sites were detected. As taxonomy of red fescues is somewhat unclear, I also studied morphology, ploidy variation and endophyte status of proposed subspecies of European red fescues. Contrary to previous literature, different ploidy levels occurred in the same subspecies. In addition to wild fescues, I also used two agronomically important cultivars of meadow and tall fescue (Schedonorus phoenix and S. pratensis). As grass-legume mixtures have an agronomic advantage over monocultures in meadows, I carried out a mixture/competition experiment with fescues and red clover to find that species composition, nutrient availability and endophyte status together determined the total biomass yield that was higher in mixtures compared to monocultures. The results of this thesis demonstrate the importance of local biotic and abiotic factors such as grazing gradients and habitat types, rather than suggested general global geographical or environmental factors on grass polyploidization or its association with symbiotic endophytic fungi. I conclude that variation in endophyte infection frequencies and ploidy levels of wild fescues support the geographic mosaic theory of coevolution. Historical incidents, e.g., glaciation and present local factors, rather than ploidy or endophyte status, determine fescue morphology.

Life without Phd? – Phd Oxygen Sensor Proteins in Hypoxic Carcinoma Cell Survival

The microenvironment within the tumor plays a central role in cellular signaling. Rapidly proliferating cancer cells need building blocks for structures as well as nutrients and oxygen for energy production. In normal tissue, the vasculature effectively transports oxygen, nutrient and waste products, and maintains physiological pH. Within a tumor however, the vasculature is rarely sufficient for the needs of tumor cells. This causes the tumor to suffer from lack of oxygen (hypoxia) and nutrients as well as acidification, as the glycolytic end product lactate is accumulated. Cancer cells harbor mutations enabling survival in the rough microenvironment. One of the best characterized mutations is the inactivation of the von Hippel-Lindau protein (pVHL) in clear cell renal cell carcinoma (ccRCC). Inactivation causes constitutive activation of hypoxia-inducible factor HIF which is an important survival factor regulating glycolysis, neovascularization and apoptosis. HIFs are normally regulated by HIF prolyl hydroxylases (PHDs), which in the presence of oxygen target HIF α-subunit to ubiquitination by pVHL and degradation by proteasomes. In my thesis work, I studied the role of PHDs in the survival of carcinoma cells in hypoxia. My work revealed an essential role of PHD1 and PHD3 in cell cycle regulation through two cyclin-dependent kinase inhibitors (CKIs) p21 and p27. Depletion of PHD1 or PHD3 caused a cell cycle arrest and subjected the carcinoma cells to stress and impaired the survival.

Ravinnevisio : Selvitys Pirkanmaan puhdistamolietteiden ja biojätteiden ravinteista ja niiden potentiaalisesta käytöstä

Selvityksen Pirkanmaan puhdistamolietteiden ja biojätteiden ravinteista ja niiden potentiaalisesta käytöstä on teettänyt Pirkanmaan ELY-keskus, Pirkanmaan Jätehuolto Oy, Tampereen Seudun Keskuspuhdistamo Oy ja Nokian Vesi Oy. Työn on toteuttanut Tampereen teknillinen yliopisto ja Luonnonvarakeskus. Työssä selvitettiin Pirkanmaan alueen ja erityisesti Tampereen seudun yhdyskuntajätevesien käsittelyssä muodostuvien puhdistamolietteiden ja biojätteiden ravinnesisältöä, käsittelyä biokaasulaitoksessa ja mädätysjäännöksen prosessointiin soveltuvia tekniikoita. Lisäksi selvitettiin mädätysjäännöksen tai siitä prosessoitujen lannoitevalmisteiden käyttöä maa- ja metsätaloudessa sekä viherrakentamisessa. Työn pidemmän aikavälin tavoitteena on yhdyskuntajäteveden puhdistamolietteiden ja biojätteiden sekä niiden sisältämien ravinteiden hyötykäytön edistäminen maakunnassa. Selvityksen perusteella Tampereen seudulla näyttäisi olevan puhdistamoliete- ja biojäteperäisten lannoitevalmisteiden ja maanparannusaineiden käyttöön soveltuvaa peltoalaa kohtuullisella kuljetusetäisyydellä. Tuotteiden laajamittainen hyötykäyttö ja ravinteiden kierrätys riippuu oleellisesti tuotteen myyntiketjun ja levityspalvelujen sekä tuotteen ominaisuuksien kehittämisestä, ohjaavien toimien ja lainsäädännön ohella. Nykyisen tietämyksen valossa suurin este puhdistamolietteiden hyödyntämiselle ovat ennakkoasenteet, sillä tehtyjen riskinarviointien perusteella puhdistamoliete- tai biojäteperäisten lannoitevalmisteiden käytöstä ei aiheudu vaaraa ihmisille.