Pleistocene isolation, secondary introgression and restricted contemporary gene flow in the pig-eye shark, Carcharhinus amboinensis across northern Australia

We examine the structure and phylogeography of the pig-eye shark (Carcharhinus amboinensis) common in shallow coastal environments in northern Australia using two types of genetic markers, two mitochondrial (control region and NADH hydrogenase 4) and two nuclear (microsatellite and Rag 1) DNA. Two populations were defined within northern Australia on the basis of mitochondrial DNA evidence, but this result was not supported by nuclear microsatellite or Rag 1 markers. One possibility for this structure might be sex-specific behaviours such as female philopatry, although we argue it is doubtful that sufficient time has elapsed for any potential signatures from this behaviour to be expressed in nuclear markers. It is more likely that the observed pattern represents ancient populations repeatedly isolated and connected during episodic sea level changes during the Pleistocene epoch, until current day with restricted contemporary gene flow maintaining population genetic structure. Our results show the need for an understanding of both the history and ecology of a species in order to interpret patterns in genetic structure.

Evaluation of potential candidate genes involved in salinity tolerance in striped catfish (Pangasianodon hypophthalmus) using an RNA-Seq approach

Increasing salinity levels in freshwater and coastal environments caused by sea level rise linked to climate change is now recognized to be a major factor that can impact fish growth negatively, especially for freshwater teleost species. Striped catfish (Pangasianodon hypophthalmus) is an important freshwater teleost that is now widely farmed across the Mekong River Delta in Vietnam. Understanding the basis for tolerance and adaptation to raised environmental salinity conditions can assist the regional culture industry to mitigate predicted impacts of climate change across this region. Attempt of next generation sequencing using the ion proton platform results in more than 174 million raw reads from three tissue libraries (gill, kidney and intestine). Reads were filtered and de novo assembled using a variety of assemblers and then clustered together to generate a combined reference transcriptome. Downstream analysis resulted in a final reference transcriptome that contained 60,585 transcripts with an N50 of 683 bp. This resource was further annotated using a variety of bioinformatics databases, followed by differential gene expression analysis that resulted in 3062 transcripts that were differentially expressed in catfish samples raised under two experimental conditions (0 and 15 ppt). A number of transcripts with a potential role in salinity tolerance were then classified into six different functional gene categories based on their gene ontology assignments. These included; energy metabolism, ion transportation, detoxification, signal transduction, structural organization and detoxification. Finally, we combined the data on functional salinity tolerance genes into a hypothetical schematic model that attempted to describe potential relationships and interactions among target genes to explain the molecular pathways that control adaptive salinity responses in P. hypophthalmus. Our results indicate that P. hypophthalmus exhibit predictable plastic regulatory responses to elevated salinity by means of characteristic gene expression patterns, providing numerous candidate genes for future investigations.

Proceedings of the Eighteenth International Sea Turtle Symposium, 3-7 March 1998, Mazatlán, Sinaloa, Mexico

For the first time in its history, the International Symposium on Sea Turtle Biology and Conservation migrated to a site outside of the United States. Thus the Eighteenth edition was hosted by the Mazatlán Research Unit of the Instituto de Ciencias del Mar y Limnología of the Mexican National Autonomous University (UNAM) in Mazatlán, Sinaloa (Mexico) where it was held from 3-7, March, 1998. Above all, our symposium is prominent for its dynamism and enthusiasm in bringing together specialists from the world´s sea turtle populations. In an effort to extend this philosophy, and fully aware of how fast the interest in sea turtles has grown, the organizers paid special attention to bring together as many people as possible. With the tremendous efforts of the Travel Committee and coupled with a special interest by the Latin American region´s devotees, we managed to get 653 participants from 43 countries. The number of presentations increased significantly too, reaching a total of 265 papers, ranging from cutting-edge scientific reports based on highly sophisticated methods, to the experiences and successes of community-based and environmental education programs. A priority given by this symposium was the support and encouragement for the construction of "bridges" across cultural and discipline barriers. We found success in achieving a multinational dialogue among interest groups- scientists, resource managers, decision makers, ngo's, private industry. There was a broad representation of the broad interests that stretch across these sectors, yet everyone was able to listen and offer their own best contribution towards the central theme of the Symposium: the conservation of sea turtles and the diversity of marine and coastal environments in which they develop through their complicated and protracted life cycle. Our multidisciplinary approach is highly important at the present, finding ourselves at a cross roads of significant initiatives in the international arena of environmental law, where the conservation of sea turtles has a key role to play. Many, many people worked hard over the previous 12 months, to make the symposium a success. Our sincerest thanks to all of them: Program committee: Laura Sarti (chair), Ana Barragán, Rod Mast, Heather Kalb, Jim Spotilla, Richard Reina, Sheryan Epperly, Anna Bass, Steve Morreale, Milani Chaloupka, Robert Van Dam, Lew Ehrhart, J. Nichols, David Godfrey, Larry Herbst, René Márquez, Jack Musick, Peter Dutton, Patricia Huerta, Arturo Juárez, Debora Garcia, Carlos Suárez, German Ramírez, Raquel Briseño, Alberto Abreu; Registration and Secretary: Jane Provancha (chair), Lupita Polanco; Informatics: Germán Ramírez, Carlos Suárez; Cover art: Blas Nayar; Designs: Germán Ramírez, Raquel Briseño, Alberto Abreu. Auction: Rod Mast; Workshops and special meetings: Selina Heppell; Student prizes: Anders Rhodin; Resolutions committee: Juan Carlos Cantú; Local organizing committee: Raquel Briseño, Jane Abreu; Posters: Daniel Ríos and Jeffrey Semminoff; Travel committee: Karen Eckert (chair), Marydele Donnelly, Brendan Godley, Annette Broderick, Jack Frazier; Student travel: Francisco Silva and J. Nichols; Vendors: Tom McFarland and J. Nichols; Volunteer coordination: Richard Byles; Latin American Reunión: Angeles Cruz Morelos; Nominations committee: Randall Arauz, Colleen Coogan, Laura Sarti, Donna Shaver, Frank Paladino. Once again, Ed Drane worked his usual magic with the Treasury of the Symposium Significant financial contributions were generously provided by government agencies. SEMARNAP (Mexico´s Ministry of Environment, Natural Resources and Fisheries) through its central office, the Mazatlán Regional Fisheries Research Center (CRIP-Mazatlán) and the National Center for Education and Capacity Building for Sustainable Development (CECADESU) contributed to the logistics and covered the costs of auditoria and audiovisual equipment for the Symposium, teachers and their hotels for the Community Development and Environmental Education workshop in the 5th Latin American Sea Turtle Specialists; DIF (Dept of Family Affairs) provided free accomodation and food for the more than 100 participants in the Latin American Reunion. In this Reunion, the British Council-Mexico sponsored the workshop on the Project Cycle. The National Chamber of the Fisheries Industry (CANAINPES) kindly sponsored the Symposium´s coffee breaks. Personnel from the local Navy (Octave Zona Naval) provided invaluable aid in transport and logistics. The Scientific Coordination Office from UNAM (CICUNAM) and the Latin American Biology Network (RELAB) also provided funding. Our most sincere recognition to all of them. In the name of this Symposium´s compilers, I would like to also express our gratitude to Wayne Witzell, Technical Editor for his guidance and insights and to Jack Frazier for his help in translating and correcting the English of contributions from some non-native English speakers. Many thanks to Angel Fiscal and Tere Martin who helped with the typing in the last, last corrections and editions for these Proceedings. To all, from around the world, who generously helped make the 18th Symposium a huge success, shared their experiences and listened to ours, our deepest gratitude! (PDF contains 316 pages)

2002-03 Florida Keys National Marine Sanctuary science report: An ecosystem report card after five years of marine zoning

Executive Summary: Circulation and Exchange of Florida Bay and South Florida Coastal Waters The coastal ecosystem of South Florida is comprised of distinct marine environments. Circulation of surface waters and exchange processes, which respond to both local and regional forcings, interconnect different coastal environments. In addition, re-circulating current systems within the South Florida coastal ecosystem such as the Tortugas Gyre contribute to retention of locally spawned larvae. Variability in salinity, chlorophyll, and light transmittance occurs on a wide range of temporal and spatial scales, in response to both natural forcing, such as seasonal precipitation and evaporation and interannual “El Niño” climate signals, and anthropogenic forcing, such as water management practices in south Florida. The full time series of surface property maps are posted at www.aoml.noaa.gov/sfp. Regional surface circulation patterns, shown by satellite-tracked surface drifters, respond to large-scale forcing such as wind variability and sea level slopes. Recent patterns include slow flow from near the mouth of the Shark River to the Lower Keys, rapid flow from the Tortugas to the shelf of the Carolinas, and flow from the Tortugas around the Tortugas Gyre and out of the Florida Straits. The Southwest Florida Shelf and the Atlantic side of the Florida Keys coastal zone are directly connected by passages between the islands of the Middle and Lower Keys. Movement of water between these regions depends on a combination of local wind-forced currents and gravitydriven transports through the passages, produced by cross-Key sea level differences on time scales of several days to weeks, which arise because of differences in physical characteristics (shape, orientation, and depth) of the shelf on either side of the Keys. A southeastward mean flow transports water from western Florida Bay, which undergoes large variations in water quality, to the reef tract. Adequate sampling of oceanographic events requires both the capability of near real-time recognition of these events, and the flexibility to rapidly stage targeted field sampling. Capacity to respond to events is increasing, as demonstrated by investigations of the 2002 “blackwater” event and a 2003 entrainment of Mississippi River water to the Tortugas. (PDF contains 364 pages.)

State of Technology for In Situ Measures of Salinity Using Conductive Temperature Sensors, Savannah, Georgia, December 3-5, 2007: workshop proceedings

This Alliance for Coastal Technologies (ACT) workshop was convened to assess the availability and state of development of conductivity-temperature sensors that can meet the needs of coastal monitoring and management communities. Rased on the discussion, there are presently a number of commercial sensor options available, with a wide range of package configurations suitable for deployment in a range of coastal environments. However, some of the central questions posed in the workshop planning documents were left somewhat unresolved. The workshop description emphasized coastal management requirements and, in particular, whether less expensive, easily deployed, lower-resolution instruments might serve many management needs. While several participants expressed interest in this class of conductivity-temperature sensors, based on input from the manufacturers, it is not clear that simply relaxing the present level of resolution of existing instruments will result in instruments of significantly lower unit cost. Conductivity-temperature sensors are available near or under the $1,000 unit cost that was operationally defined at the workshop as a breakpoint for what might be considered to be a "low cost" sensor. For the manufacturers, a key consideration before undertaking the effort to develop lower cost sensors is whether there will be a significant market. In terms of defining "low cost," it was also emphasized that the "life cycle costs" for a given instrument must be considered (e.g., including personnel costs for deployment and maintenance). An adequate market survey to demonstrate likely applications and a viable market for lower cost sensors is needed. Another topic for the workshop was the introduction to the proposed ACT verification for conductivity-temperature sensors. Following a summary of the process as envisioned by ACT, initial feedback was solicited. Protocol development will be pursued further in a workshop involving ACT personnel and conductivity-temperature sensor manufacturers.[PDF contains 28 pages]

O sistema fluvio-estuarino da Baía de Sepetiba preservado na estratigrafia rasa da plataforma continental interna adjacente (RJ)

A análise de dados de reflexão sísmica monocanal boomer (Hz ~ 700-4,000; penetração ~ 70 ms) adquiridos na plataforma continental interna-média (até ~ 50-60 m de profundidade) ao largo do sistema estuarino baía de Sepetiba, no Estado do Rio de Janeiro, Brasil, revelou a ocorrência de uma sucessão sedimentar preservada 15-20 m, sismicamente interpretada como representando ambientes fluvio-estuarinos para marinhos rasos. Estas séries são sotopostas à inconformidade regional mais superior reconhecida na escala de plataforma, chamada superfície S3. Esta superfície é erodida por numerosas incisões fluviais, que sugerem processos erosivos associados à prolongada exposição subaérea da plataforma continental durante o estágio isotópico marinho 2 (MIS 2), globalmente datada em ~ 20 ka A.P.. A preservação de tais unidades de corte e preenchimento estuarinho presumíveis Pleistoceno Superior-Holoceno na plataforma interna-média (até ~ 30 km da costa) evidencia pela primeira vez na área a existência de um paleo sistema fluvial bastante desenvolvido e processos dominantes de denudação na bacia hidrográfica a montante que atualmente alimenta a baía de Sepetiba. Bem como que, uma série de elementos arquiteturais sísmicos dentro desta sucessão estuarina, como canais de maré retrogradantes, registram a evolução do paleo sistema estuarino de um sistema aberto à um sistema parcialmente protegido durante a transgressão Holocênica. A formação e erosão de uma sucessão de ilhas barreira isoladas e canais de maré durante a transgressão persistiu até o desenvolvimento de uma superfície estratigráfica superior na área, interpretada como a superfície de máxima inundação (MFS) no registro estratigráfico. A ilha barreira atual (restinga da Marambaia) prograda sobre a MFS como uma feição deposição regressiva, apontando para uma idade mais jovem do que cerca de ~ 5 ka A. P., idade da transgressão máxima na área, de acordo com a literatura disponível.

Evaluation of marine phytoplankton toxicity by application of marine invertebrate bioassays

The dinoflagellate Alexandrium minutum and the haptophyte Prymnesium parvum are well known for their toxin production and negative effects in marine coastal environments. A. minutum produces toxins which cause paralytic shellfish poisoning in humans and can affect copepods, shellfish and other marine organisms. Toxins of P. parvum are associated with massive fish mortalities resulting in negative impacts on the marine ecosystem and large economic losses in commercial aquaculture. The aim of this work is to improve our knowledge about the reliability of the use of marine invertebrate bioassays to detect microalgae toxicity, by performing: (i) a 24- to 48-h test with the brine shrimp Artemia franciscana; (ii) a 48-hour embryo-larval toxicity test with the sea urchin Paracentrotus lividus; and (iii) a 72-h test with the amphipod Corophium multisetosum. The results indicate that A. franciscana and P. lividus larvae are sensitive to the toxicity of A. minutum and P. parvum. LC50 comparison analysis between the tested organisms reveals that A. franciscana is the most sensitive organism for A. minutum. These findings suggest that the use of different organizational biological level bioassays appears to be a suitable tool for A. minutum and P. parvum toxicity assessment.

Ocupação dos solos em terrenos marginais às lagoas costeiras: mudanças e perspectivas ambientais frente à expansão urbana - o caso da lagoa de Jacarepaguá (Rio de Janeiro)

O objetivo do trabalho é analisar a lagoa de Jacarepaguá e a ocupação no seu entorno de forma multitemporal, contribuindo para o melhor entendimento das atuais condições ambientais da Baixada de Jacarepaguá. A metodologia adotada buscou identificar mudanças físicas do meio a partir 1980 através da elaboração, comparação e análise de mapas de ocupação e uso dos solos relativos aos anos de 1984, 1992, 2001 e 2010, e da identificação da qualidade da água da lagoa de Jacarepaguá, das suas condições de profundidade, tamanho do espelho dágua e de sua relação com a população local. Com isso foi possível retratar formas de integração entre os processos naturais e sociais em um dado espaço-tempo assim como estabelecer tendências futuras desse ambiente. Os resultados mostram que de tempos em tempos há uma refuncionalização do espaço, que se reflete não só na conformação dos terrenos marginais alagadiços mas também nas condições físicas da própria lagoa de Jacarepaguá. Seu espelho dágua vem sendo confinado pelas formas de ocupação nas áreas das bacias fluviais e nos seus terrenos marginais (impermeabilização, aterros e obras de drenagem) fazendo com que haja uma estabilidade relativa na sua dimensão areal e também no volume de suas águas. A lagoa apresenta dados históricos de poluição por esgoto doméstico que têm acelerado suas condições naturais de assoreamento e comprometido à qualidade de suas águas. E mesmo havendo projetos e obras de saneamento para o local, verifica-se que tem havido um aumento da poluição da lagoa principalmente na sua porção oeste, conforme o resultado das análises realizadas com os dados temporais disponíveis de DBO, fósforo, Nitrogênio Kj, OD e salinidade. Isto pode ser explicado pela tendência atual da expansão urbana rumo a essa direção. Constatou-se que apesar de, por algum tempo, os tipos de terreno terem condicionado as formas de ocupação, atualmente o processo se inverteu, sendo a ocupação indutora e recondicionante da estruturação do meio. São apresentadas e caracterizadas diversas formas e respectivos tipos de usos do solo na área. Conclui-se que as condições ambientais da lagoa de Jacarepaguá e suas perspectivas futuras dependem atualmente mais da forma com que a sociedade quer e pretende incorpora-la ao seu ambiente do que da dinâmica natural do sistema físico do qual faz parte.

Bibliographie des lagunes et du littoral de Côte d'Ivoire (Afrique de l'Ouest)

The present bibliography collects references on lagoon and coastal environments in Côte d'Ivoire. It is mainly based on: - the draft bibliography prepared by Charles-Dominique and Durand in 1979, edited in the Archives Scientifiques du Centre de Recherches Océanographiques d'Abidjan (vol. 5 no. 2); - the synthesis on the marine environment, published in 1993 (LeLoeuff, Marchal and Amon-Kothias editors); - and the synthesis on the lagoon environment, published in 1994 (Durand, Dufour, Guiral and Zabi editors). In spite of a careful check of the available documents, it is more than possible that references are lacking or erroneous. That's why this bibliography is still a draft, and the author will be glad to receive complements and/or corrections from lectors. After these contributions, a more comprehensive version will be proposed. Remarks can be sent to this e-mail: arfi@ortsom.orstom.fr or to the postal address.

Invasão biológica de Casuarina equisetifolia na Restinga da Massambaba: Estrutura, Riqueza e Regeneração

A invasão biológica é vista como o processo de introdução e adaptação de espécies que não fazem parte, naturalmente, de um determinado ecossistema e é considerada a segunda maior causa de perda de biodiversidade. Casuarina equisetifolia é uma angiosperma bem adaptada a ambientes com alto teor de salinidade e baixo teor hídrico representando uma grande ameaça a perda de biodiversidade em ambientes costeiros ao colonizar rapidamente áreas degradadas nesses ambientes. O presente trabalho procurou avaliar os efeitos da invasão de C. equisetifolia na diversidade de espécies e estrutura da comunidade em um trecho na Restinga da Massambaba. Foram distribuídas 46 parcelas de 10m x 10m em cinco diferentes tratamentos próximas entre si denominadas: manejo, queimada, invasão, restinga e controle. Através do escalonamento multidimensional não métrico (NMDS) verificou-se que existe diferença na composição florística entre os tratamentos invadidos e não invadidos, mas que entre os tratamentos invadidos a composição é a mesma. Mesmo os tratamentos sendo próximos entre si, a ANOVA mostrou que existe diferença na densidade de C. equisetifolia mostrando que fatores externos influenciam a estrutura da população nesses tratamentos. O hábito herbáceo foi predominante nos tratamentos de invasão diferindo do tratamento controle onde o hábito arbustivo é o mais significativo. A síndrome de dispersão predominante foi a zoocórica em todos os tratamentos, exceto no tratamento de fogo e de invasão, onde a anemocoria obteve o mesmo número numero de espécies. A ANOVA indicou que a riqueza do tratamento controle é muito maior do que a riqueza nos tratamentos de invasão. Os tratamentos de invasão possuem um índice de Shannon variando de 0,23 a 1,4, enquanto a tratamento controle possui um índice de 2,49, mostrando o quanto C. equisetifolia homogeneíza a flora, fazendo com que poucas espécies consigam colonizar esses ambientes como Pilosocereus arrabidae, Schinus terebinthifolius e Varronia curassavica. A regressão linear realizada indica que a riqueza de espécies diminui com o aumento da densidade de C. equisetifolia

Fluxo de carbono orgânico particulado e dissolvido no estuário do rio Barra Grande em Vila Dois Rios, Ilha Grande, RJ.

Os estuários são ambientes costeiros semifechados, que atuam como um sítio de troca de água e de matéria. De acordo com suas características, estuários podem exportar ou importar matéria orgânica (MO). A MO é um complexo bioquímico formado por diversos compostos orgânicos, e sua quantificação é normalmente traduzida pela quantidade de carbono orgânico total (COT), seu elemento mais abundante, tanto na forma de carbono orgânico dissolvido (COD), quanto carbono orgânico particulado (COP). Determinar a origem do carbono orgânico pode auxiliar na compreensão da dinâmica da MO, podendo ser feita com auxílio de isótopos estáveis de carbono (13C) e de nitrogênio (15N). Vila Dois Rios, é um vilarejo localizado ao sul da Ilha Grande, onde se localiza o rio Barra Grande, que possui pouca intervenção antrópica. Esse é um rio de porte pequeno, com uma mata ciliar bem preservada, representada por espécies de Mata Atlântica, com presença de manguezal, ao lado está localizado o Centro de Estudos Ambientais e Desenvolvimento Sustentável (CEADS). Foram realizadas amostragens sazonais, todas em maré de sizígia, ao longo do ano de 2012, totalizando quatro coletas trimestrais. Todas as campanhas ocorreram em uma estação fixa, na foz do rio Barra Grande. A amostragem de água foi realizada em duas profundidades, superfície e fundo, coletadas em intervalos de 30 minutos, ao longo de 25 horas, para as seguintes determinações: carbono orgânico particulado (COP), carbono orgânico dissolvido (COD) e isótopos estáveis de carbono (13C) e de nitrogênio (15N). Concomitantemente, foram medidos in situ: pH, salinidade, temperatura, oxigênio dissolvido (OD), profundidade do Disco de Secchi e medidas de fluxo. Ao fim da amostragem na Ilha Grande, o material coletado foi transportado para o Laboratório de Geoquímica Orgânica Marinha (LaGOM), na UERJ, onde foi analisado posteriormente. Durante todas as campanhas, foi observada uma maré mista, predominantemente semidiurna com desigualdade. Os resultados de temperatura e salinidade evidenciaram uma estratificação vertical em todas as campanhas. Os valores medianos de MPS foram sempre maiores no fundo em relação às amostras coletadas na superfície. O carbono orgânico apresentou maiores concentrações sob a forma dissolvida do que na particulada, variando entre as profundidades e as campanhas, sendo observadas maiores concentrações medianas, tanto de COD quanto de COP, em superfície e no fundo, na campanha de verão. As concentrações medianas de Nt observadas ao longo das três campanhas foram baixas, estando relacionadas às baixas concentrações de COP. A razão molar C/N e as isotópicas indicaram que o manguezal demonstrou ser a fonte mais abundante de COP nesse estuário. Os cálculos de fluxo indicaram que o estuário tanto importou, quanto exportou material, e apenas o COD foi importado em todas as campanhas.

Evolução da deposição da matéria orgânica na Baía da Ilha Grande, RJ

Os ambientes costeiros vem sofrendo impactos devido a ocupação humana, um dos principais efeitos está na alteração da ciclagem de matéria orgânica (MO) na zona costeira. Para investigar as principais fontes de MO e avaliar como a atividade humana tem alterado a composição da MO sedimentar na baía da Ilha Grande (BIG), quatro testemunhos sedimentares (Abraão, Saco do Céu, TEBIG e Marina Piratas) foram datados e analisados para carbono orgânico, nitrogênio total, teor de finos, esteróis e n-álcoois. Os resultados indicam maiores contribuições de matéria orgânica alóctone nos testemunhos da enseada de Abraão e principalmente do Saco do Céu, estes testemunhos são enriquecidos em carbono orgânico e sedimentos finos, em comparação com os sedimentos coletados nas proximidades do TEBIG e da Marina Piratas. A partir dos anos de 1950 algumas alterações, como o incremento da contribuição fitoplanctônica,são observadas nos testemunhos foram indicadas pela Análise de Componentes Principais (PCA), destaca-se nesta época a acentuada mudança que ocorreu nas características granulométricas do testemunho da Marina Piratas. Estas alterações são efeitos indiretos da ação do homem que devido ao elevado crescimento populacional vem poluindo corpos dágua da região e destruindo ecossistemas de elevada importância como manguezais. No entanto através da análises dos marcadores de esgoto foi observado que a influência de MO de origem fecal nos sedimentos é muito pequena e cresceu muito pouco nas últimas décadas. Em conjunto com a elevada cobertura vegetal da região, os elevados índices pluviométricos regionais auxiliam a carrear grandes quantidades de material terrígeno para os sedimentos da baía como indicado pela predomínio de n-álcoois de cadeias longas

National Status and Trends Bioeffects Program: field methods

Environmental quality indicators provide resource managers with information useful to assess coastal condition and scientifically defensible decisions. Since 1984, the National Oceanic and Atmospheric Administration (NOAA), through its National Status and Trends (NS&T) Program, has provided environmental monitoring data on chemical, physical, and biological indicators of coastal environments. The program has two major monitoring components to meet its goals. The Bioeffects Assessments Program evaluates the health of bays, estuaries, and the coastal zone around the nation using the Sediment Quality Triad technique that includes measuring sediment contaminant concentrations, sediment toxicity and benthic community structure. The Mussel Watch Program is responsible for temporal coastal monitoring of contaminant concentrations by quantifying chemicals in bivalve mollusks. The NS&T Program is committed to providing the highest quality data to meet its statutory and scientific responsibilities. Data, metadata and information products are managed within the guidance protocols and standards set forth by NOAA’s Integrated Ocean Observing System (IOOS) and the National Monitoring Network, as recommended by the 2004 Ocean Action Plan. Thus, to meet these data requirements, quality assurance protocols have been an integral part of the NS&T Program since its inception. Documentation of sampling and analytical methods is an essential part of quality assurance practices. A step-by–step summary of the Bioeffects Program’s field standard operation procedures (SOP) are presented in this manual.

Diversity and Distribution of Sediment NirS-Encoding Bacterial Assemblages in Response to Environmental Gradients in the Eutrophied Jiaozhou Bay, China

A gene-clone-library-based molecular approach was used to study the nirS-encoding bacteria-environment relationship in the sediments of the eutrophic Jiaozhou Bay. Diverse nirS sequences were recovered and most of them were related to the marine cluster I group, ubiquitous in estuarine, coastal, and marine environments. Some NirS sequences were unique to the Jiaozhou Bay, such as the marine subcluster VIIg sequences. Most of the Jiaozhou Bay NirS sequences had their closest matches originally detected in estuarine and marine sediments, especially from the Chesapeake Bay, indicating similarity of the denitrifying bacterial communities in similar coastal environments in spite of geographical distance. Multivariate statistical analyses indicated that the spatial distribution of the nirS-encoding bacterial assemblages is highly correlated with environmental factors, such as sediment silt content, NH4+ concentration, and OrgC/OrgN. The nirS-encoding bacterial assemblages in the most hypernutrified stations could be easily distinguished from that of the least eutrophic station. For the first time, the sedimentological condition was found to influence the structure and distribution of the sediment denitrifying bacterial community.

An overview of Calanus helgolandicus ecology in European waters

We review current knowledge and understanding of the biology and ecology of the calanoid copepod Calanus helgolandicus in European waters, as well as provide a collaborative synthesis of data from 18 laboratories and 26 sampling stations in areas distributed from the northern North Sea to the Aegean and Levantine Seas. This network of zooplankton time-series stations has enabled us to collect and synthesise seasonal and multi-annual data on abundance, body size, fecundity, hatching success and vertical distribution of C. helgolandicus. An aim was to enable comparison with its congener Calanus finmarchicus, which has been studied intensively as a key component of European and north east Atlantic marine ecosystems. C. finmarchicus is known to over-winter at depth, whereas the life-cycle of C. helgolandicus is less well understood. Overwintering populations of C. helgolandicus have been observed off the Atlantic coast between 400 and 800 m, while in the Mediterranean there is evidence of significant deep-water populations at depths as great as 4200 m. The biogeographical distribution of C. helgolandicus in European coastal waters covers a wide range of habitats, from open ocean to coastal environments, and its contribution to mesozooplankton biomass ranges from 6% to 93%. Highest abundances were recorded in the Adriatic and off the west coast of Spain. C. helgolandicus is generally found in 9-20 C water, with maximum abundances from 13-17 C. In contrast, C. finmarchicus is found in cooler water between 0 and 15 C, with peak abundances from 0 to 9 C. As water has warmed in the North Atlantic over recent decades, the range of C. helgolandicus and its abundance on the fringes of its expanding range have increased. This review will facilitate development of population models of C. helgolandicus. This will not only help answer remaining questions but will improve our ability to forecast future changes, in response to a warming climate, in the abundance and distribution of this important species.