155 resultados para WGS


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Negli ultimi anni l’interesse nei confronti dell’H2 è cresciuto notevolmente per l’aumento della richiesta energetica mondiale. Uno dei processi più importanti per la produzione di H2 utilizza la reazione di Water-Gas Shift (WGS) per il trattamento delle correnti in uscita dai processi di steam reforming o di ossidazione parziale catalitica. CO + H2O  CO2 + H2 ∆H0298 = -41,2 KJ/mol Sono quindi stati sviluppati sistemi catalitici attivi nella reazione di WGS a media temperatura (circa 300 °C). Partendo da sistemi catalitici a base di Cu/Zn/Al, ottenuti da precursori idrotalcitici e sviluppati in lavori di tesi precedenti, sono state effettuate modifiche nella composizione al fine di aumentarne l’attività e la stabilità. L’aggiunta di piccole quantità di Mg ha un effetto positivo sull’attività dei sistemi catalitici, con effetti più evidenti a 250 °C. Tuttavia, l’aumento del contenuto di Mg, sebbene migliori le proprietà fisiche del catalizzatore (area superficiale e dispersione del Cu) sia del campione calcinato che di quello scaricato dopo reazione, peggiora drasticamente l’attività catalitica. L’aggiunta di piccole quantità di Mg sembra portare alla stabilizzazione della specie attiva Cu+ e promuovere un meccanismo redox superficiale (Cu0 e Cu+). E’ possibile correlare la conversione del CO con il rapporto ZnO/Cu, confermando il ruolo nella reazione di WGS dell’interazione Cu0/ZnO libero. La sostituzione di Mg con Ba comporta un miglioramento delle prestazioni catalitiche, in particolare nelle condizioni MTS (300 °C), suggerendo una più facile dissociazione dell’acqua legata alla stabilizzazione degli ossidrili da parte dei siti basici. È però accompagnato da una diminuzione della stabilità nelle condizioni di reazione. L’aggiunta di piccole quantità di La, Ce o Zr (con un rapporto Al/R = 50 mol/mol) incrementa la stabilità termica, sia in termini di proprietà fisiche che di attività catalitica. A seguito dei cicli termici di invecchiamento accelerato, infatti, non si riscontrano importanti diminuzioni di attività catalitica, evidenziando un’elevata stabilità della fase attiva.

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Per massimizzare la quantità di H2 nel gas di sintesi ottenuto dal processo di Steam Reforming (SR) si utilizza la reazione di Water Gas Shift (WGS): CO + H2O ⇆ CO2 + H2 ∆H0298 = - 41,2 KJ/mol Sulla base di sistemi catalitici Cu/Zn/Al si è cercato di modificarne la composizione per ottenere catalizzatori attivi e stabili in un intervallo di temperatura tra 350-450 °C, (High Temperature Shift o HTS), al fine di sostituire i tradizionali sistemi a base di Fe/Cr, in relazione alle limitazioni ambientali all’utilizzo del Cr e per poter operare con valori inferiori del rapporto S/DG. Si sono inoltre studiate le caratteristiche dei catalizzatori e le condizioni di reazione che favoriscono la produzione di metilammine ed alcoli nel processo a temperature intermedie, tra 300-350 °C (Middle Temperature Shift o MTS), in relazione alla disattivazione che questi composti comportano nel processo di SR a seguito del riciclo della fase acquosa dal reattore di WGS.

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L’H2 è un vettore energetico di elevato interesse, utilizzato nell’industria chimica per la produzione di NH3 e CH3OH, oltre che per le reazioni di idrogenazione ed HDS. Un importante processo nella produzione di H2 è la reazione di Water Gas Shift (WGS), usata nel trattamento delle correnti uscenti dal reattore di Steam Reforming (SR) del metano: CO + H2O  CO2 + H2 ∆H0298K = -41,2 KJ/mol. Sulla base di precedenti lavori, sono stati sviluppati nuovi catalizzatori per la reazione WGS ad alta temperatura (HTS), alternativi ai tradizionali sistemi a base di Fe/Cr, in considerazione dei vincoli economici (elevati valori del rapporto vapore/gas secco o S/DG) ed ambientali (formazione di CrVI) di questi sistemi. Partendo da sistemi Cu/Zn/Al con un basso contenuto di rame, ottenuti da precursori tipo idrotalcite (HT), stato studiato l’effetto dell’aggiunta di piccole quantità di alcuni promotori sull’attività e stabilità dei catalizzatori ottenuti, osservando un effetto positivo sulle caratteristiche fisiche, come l’aumento dell’area superficiale e della dispersione della fase attiva. I campioni contenenti i promotori erano inoltre caratterizzati da una maggiore stabilità termica e, in alcuni casi, da un’attività catalitica superiore a quella del catalizzatore di riferimento privo di promotori. L’aggiunta di piccole quantità di alcali alla formulazione con la migliore attività portava ad un ulteriore aumento di attività e di stabilità, attribuibile ad una minore formazione di coke sulla superficie. I sistemi più interessanti potevano operare anche a bassi valori del rapporto S/DG, interessanti dal punto di vista industriale. Lo studio dell’adsorbimento di CO mediante FT-IR ha permesso di ipotizzare la possibile natura della fase attiva nei sistemi. Infine, lo studio è stato esteso a sistemi per la reazione di WGS a media temperatura (MTS), osservando anche in questo caso un positivo effetto legato all’aggiunta di promotori, con un aumento dell’attività catalitica e della stabilità con il tempo di reazione.

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Il presente lavoro di tesi si è focalizzato sullo studio e sulla ottimizzazione di un sistema integrato, che utilizzi la reazione di oxy-reforming del metano al fine di produrre syngas che venga trattato attraverso la water-gas shift al fine di abbattere il contenuto di CO e al tempo stesso aumentare la resa in H2. Con l’obiettivo di ottenere H2 ad elevata purezza (>99%) da poter essere inviato direttamente a celle a combustible ed in impianti di piccola taglia con possibile delocalizzazione della produzione industriale di energia elettrica e termica “pulita”, la miscela reale uscente dal processo di oxy-reforming è stata processata tramite successiva water-gas shift direttamente all’interno di una membrana ceramica al Pd selettiva nella separazione di H2. L’innovativià di questo progetto di studio è data da diversi parametri quali: 1) l’impiego dell’oxy-reforming in alternativa al normale steam-reforming del CH4, che permette di condurre il processo a temperature decisamente inferiori (700-750°C), utilizzando un minor quantitativo di vapore (S/C = 0.7); 2) l’utilizzo di due nuove formulazioni di catalizzatore di WGS per alte temperature, capace di operare in un unico stadio conversioni di CO ottenibili industrialmente solo attraverso i convenzionali due due stadi di reazione (e due diverse formulazioni di catalizzatori a base di Fe/Cr e Cu); 3) l’utilizzo di supporti ceramici con membrana a base di Pd, capaci di ospitare al loro interno un catalizzatore eterogeneo per la reazione di WGS a 400°C, rendendo quindi possibile la produzione e contemporanea separazione di H2 con un ulteriore effetto positivo poiché la membrana rimuovendo H2 dalla zona di reazione favorisce il superamento dell’equilibrio termodinamico per la conversione del CO, abbassandone il contenuto nel flusso uscente dei gas reazione e rendendo non più necessari sistemi aggiuntivi di separazione quali PSA o PROXY.

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BACKGROUND  Whole genome sequencing (WGS) is increasingly used in molecular-epidemiological investigations of bacterial pathogens, despite cost- and time-intensive analyses. We combined strain-specific single nucleotide polymorphism (SNP)-typing and targeted WGS to investigate a tuberculosis cluster spanning 21 years in Bern, Switzerland. METHODS  Based on genome sequences of three historical outbreak Mycobacterium tuberculosis isolates, we developed a strain-specific SNP-typing assay to identify further cases. We screened 1,642 patient isolates, and performed WGS on all identified cluster isolates. We extracted SNPs to construct genomic networks. Clinical and social data were retrospectively collected. RESULTS  We identified 68 patients associated with the outbreak strain. Most were diagnosed in 1991-1995, but cases were observed until 2011. Two thirds belonged to the homeless and substance abuser milieu. Targeted WGS revealed 133 variable SNP positions among outbreak isolates. Genomic network analyses suggested a single origin of the outbreak, with subsequent division into three sub-clusters. Isolates from patients with confirmed epidemiological links differed by 0-11 SNPs. CONCLUSIONS  Strain-specific SNP-genotyping allowed rapid and inexpensive identification of M. tuberculosis outbreak isolates in a population-based strain collection. Subsequent targeted WGS provided detailed insights into transmission dynamics. This combined approach could be applied to track bacterial pathogens in real-time and at high resolution.

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Over 250 Mendelian traits and disorders, caused by rare alleles have been mapped in the canine genome. Although each disease is rare in the dog as a species, they are collectively common and have major impact on canine health. With SNP-based genotyping arrays, genome-wide association studies (GWAS) have proven to be a powerful method to map the genomic region of interest when 10-20 cases and 10-20 controls are available. However, to identify the genetic variant in associated regions, fine-mapping and targeted re-sequencing is required. Here we present a new approach using whole-genome sequencing (WGS) of a family trio without prior GWAS. As a proof-of-concept, we chose an autosomal recessive disease known as hereditary footpad hyperkeratosis (HFH) in Kromfohrl änder dogs. To our knowledge, this is the first time this family trio WGS-approach, has successfully been used to identify a genetic variant that perfectly segregates with a canine disorder. The sequencing of three Kromfohrl änder dogs from a family trio (an affected offspring and both its healthy parents) resulted in an average genome coverage of 9.2X per individual. After applying stringent filtering criteria for candidate causative coding variants, 527 single nucleotide variants (SNVs) and 15 indels were found to be homozygous in the affected offspring and heterozygous in the parents. Using the computer software packages ANNOVAR and SIFT to functionally annotate coding sequence differences and to predict their functional effect, resulted in seven candidate variants located in six different genes. Of these, only FAM83G:c155G>C (p.R52P) was found to be concordant in eight additional cases and 16 healthy Kromfohrl änder dogs.

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Immigrants from high tuberculosis (TB) incidence regions are a risk group for TB in low-incidence countries such as Switzerland. In a previous analysis of a nationwide collection of 520 Mycobacterium tuberculosis isolates from 2000-2008, we identified 35 clusters comprising 90 patients based on standard genotyping (24-loci MIRU-VNTR and spoligotyping). Here, we used whole genome sequencing (WGS) to revisit these transmission clusters. Genome-based transmission clusters were defined as isolate pairs separated by ≤12 single nucleotide polymorphisms (SNPs). WGS confirmed 17/35 (49%) MIRU-VNTR clusters; the other 18 clusters contained pairs separated by >12 SNPs. Most transmission clusters (3/4) of Swiss-born patients were confirmed by WGS, as opposed to 25% (4/16) of clusters involving only foreign-born patients. The overall clustering proportion using standard genotyping was 17% (90 patients, 95% confidence interval [CI]: 14-21%), but only 8% (43 patients, 95% CI: 6-11%) using WGS. The clustering proportion was 17% (67/401, 95% CI: 13-21%) using standard genotyping and 7% (26/401, 95% CI: 4-9%) using WGS among foreign-born patients, and 19% (23/119, 95% CI: 13-28%) and 14% (17/119, 95% CI: 9-22%), respectively, among Swiss-born patients. Using weighted logistic regression, we found weak evidence for an association between birth origin and transmission (aOR 2.2, 95% CI: 0.9-5.5, comparing Swiss-born patients to others). In conclusion, standard genotyping overestimated recent TB transmission in Switzerland when compared to WGS, particularly among immigrants from high TB incidence regions, where genetically closely related strains often predominate. We recommend the use of WGS to identify transmission clusters in low TB incidence settings.

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The scope of this PhD thesis was the hydrogeological conceptualisation of the Upper Ouémé river catchment in Benin. The study area exceeds 14,500 km**2 and is underlain by a crystalline basement. At this setting the typical sequence of aquifers - a regolith aquifer at the top and a fractured bedrock aquifer at the bottom - is encountered, which is found in basement areas all over Africa and elsewhere in the world. The chosen regional approach revealed important information about the hydrochemistry and hydrogeology of this catchment. Based on the regional conceptual model a numerical groundwater flow model was designed. The numerical model was used to estimate the impact of climate change on the regional groundwater resources. This study was realised within the framework of the German interdisciplinary research project IMPETUS (English translation: "Integrated approach to the efficient management of scarce water resources in West Africa"), which is jointly managed by the German universities of Bonn and Cologne. Since the year 2000 the Upper Ouémé catchment was the principal target for investigations into the relevant processes of the regional water cycle. A first study from 2000 to 2003 (Fass, 2004, http://nbn-resolving.de/urn:nbn:de:hbz:5n-03849) focused on the hydrogeology of a small local catchment (~30 km**2). In the course of this thesis five field campaigns were underdone from the year 2004 to 2006. In the beginning of 2004 a groundwater monitoring net was installed based on 12 automatic data loggers. Manual piezometric measurements and the sampling of groundwater and surface water were realised for each campaign throughout the whole study area. Water samples were analysed for major ions, for a choice of heavy metals and for their composition by deuterium, oxygen-18 and tritium. The numerical model was performed with FEFLOW. The hydraulic and hydrochemical characteristics were described for the regolith aquifer and the bedrock aquifer. The regolith aquifer plays the role of the groundwater stock with low conductivity while the fractures of the bedrock may conduct water relatively fast towards extraction points. Flow in fractures of the bedrock depends on the connectivity of the fracture network which might be of local to subregional importance. Stable isotopes in combination with hydrochemistry proved that recharge occurs on catchment scale and exclusively by precipitation. Influx of groundwater from distant areas along dominant structures like the Kandi fault or from the Atacora mountain chain is excluded. The analysis of tritium in groundwater from different depths revealed the interesting fact of the strongly rising groundwater ages. Bedrock groundwater may possibly be much older than 50 years. Equilibrium phases of the silicate weathering products kaolinite and montmorillonite showed that the deeper part of the regolith aquifer and the bedrock aquifer feature either stagnant or less mobile groundwater while the shallow aquifer level is influenced by seasonal groundwater table fluctuations. The hydrochemical data characterised this zone by the progressive change of the hydrochemical facies of recently infiltrated rainwater on its flow path into deeper parts of the aquifers. Surprisingly it was found out that seasonal influences on groundwater hydrochemistry are minor, mainly because they affect only the groundwater levels close to the surface. The transfer of the hydrogeological features of the Upper Ouémé catchment into a regional numerical model demanded a strong simplification. Groundwater tables are a reprint of the general surface morphology. Pumping or other types of groundwater extraction would have only very local impact on the available groundwater resources. It was possible to integrate IMPETUS scenario data into the groundwater model. As a result it was shown that the impact of climate change on the groundwater resources until the year 2025 under the given conditions will be negligible due to the little share of precipitation needed for recharge and the low water needs for domestic use. Reason for concern is the groundwater quality on water points in the vicinity of settlements because of contamination by human activities as shown for the village of Dogué. Nitrate concentrations achieved in many places already alerting levels. Health risks from fluoride or heavy metals were excluded for the Upper Ouémé area.

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Plant species distributions are expected to shift and diversity is expected to decline as a result of global climate change, particularly in the Arctic where climate warming is amplified. We have recorded the changes in richness and abundance of vascular plants at Abisko, sub-Arctic Sweden, by re-sampling five studies consisting of seven datasets; one in the mountain birch forest and six at open sites. The oldest study was initiated in 1977-1979 and the latest in 1992. Total species number increased at all sites except for the birch forest site where richness decreased. We found no general pattern in how composition of vascular plants has changed over time. Three species, Calamagrostis lapponica, Carex vaginata and Salix reticulata, showed an overall increase in cover/frequency, while two Equisetum taxa decreased. Instead, we showed that the magnitude and direction of changes in species richness and composition differ among sites.

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This dataset contains raster grids in GeoTIFF format describing the habitat suitability for living Lophelia pertusa reefs in the Irish continental margin (extended continental shelf claim). The habitat suitability map is given in continuous and binary (based on the 10th percentile threshold) format. The geographic extent is 25°53.801'W - 6°42.401'W and 46°45.033'N - 57°27.033'N. The spatial resolution is 0.01°x0.01°. The map projection is WGS 1984.

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During a field campaign in the Austral spring 2012 the sedimentary architecture of a periglacial flood plain at the northeastern coast of Potter Peninsula (Area 5) was revealed using ground-penetrating radar (GPR, Geophysical Survey Systems, Inc. SIR-3000). 14 profiles were collected using a mono-static 200 MHz antenna operated in common offset mode. Trace increment was set to 0.05 m. A differential global-positioning system (dGPS, Leica GS09) was used to obtain topographical information along the GPR lines. GPR data are provided in RADAN-Format, dGPS coordinates are provided in ascii format; projection is UTM (WGS 84, zone 21S).

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During a field campaign in the Austral spring 2012 the sedimentary architecture of a polar gravel-beach system at the southern coast of Potter Peninsula (Area 3) was revealed using ground-penetrating radar (GPR, Geophysical Survey Systems, Inc. SIR-3000). 31 profiles were collected using a mono-static 200 MHz antenna operated in common offset mode. Trace increment was set to 0.05 m. A differential global-positioning system (dGPS, Leica GS09) was used to obtain topographical information along the GPR lines. GPR data are provided in RADAN-Format, dGPS coordinates are provided in ascii format; projection is UTM (WGS 84, zone 21S).

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During two field campaigns (Austral springs 2011 and 2012) the sedimentary architecture of a polar gravel-spit system at the northern coast of Potter Peninsula (Area 4) was revealed using ground-penetrating radar (GPR, Geophysical Survey Systems, Inc. SIR-3000). 47 profiles were collected using a mono-static 200 MHz antenna operated in common offset mode. Trace increment was set to 0.05 m. A differential global-positioning system (dGPS, Leica GS09) was used to obtain topographical information along the GPR lines. GPR data are provided in RADAN-Format, dGPS coordinates are provided in ascii format; projection is UTM (WGS 84, zone 21S).

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During two field campaigns (Austral springs 2011 and 2012) the sedimentary architecture of a polar gravel-beach system at the western coast of Potter Peninsula (Area 1) was revealed using ground-penetrating radar (GPR, Geophysical Survey Systems, Inc. SIR-3000). 21 profiles were collected using a mono-static 200 MHz antenna operated in common offset mode. Trace increment was set to 0.05 m. A differential global-positioning system (dGPS, Leica GS09) was used to obtain topographical information along the GPR lines. GPR data are provided in RADAN-Format, dGPS coordinates are provided in ascii format; projection is UTM (WGS 84, zone 21S).

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This airborne hyperspectral (19 bands) image data of Heron Reef, Great Barrier Reef, Australia is derived from Compact Airborne Spectrographic Imager (CASI) data acquired on 1st and 3rd of July 2002, latitude -23.45, longitude 151.92. Processing and correction to at-surface data was completed by Karen Joyce (Joyce, 2004). Raw imagery consisted several images corresponding to the number of flight paths taken to cover the entire Heron Reef. Spatial resolution is one meter. Radiometric corrections converted the at-sensor digital number values to at surface spectral radiance values using sensor specific calibration coefficients and CSIRO's c-WomBat-c atmospheric correction software. Geometric corrections were done using field collected coordinates of features identified in the image. Projection used was Universal Transverse Mercator Zone 56 South and Datum used was WGS 84. Image data is in TIFF format.