What’s in it for me? Incentivizing the use of institutional repositories

Presentation at Open Repositories 2014, Helsinki, Finland, June 9-13, 2014

Factores de riesgo del comportamiento y readiness de aficionados inscritos a carreras atléticas de fondo de 18-64 años en Bogotá D.C., 2014”

La participación en carreras atléticas de calle ha aumentado; esto requiere detectar riesgos previos al esfuerzo físico. Objetivo. Identificar factores de riesgo del comportamiento y readiness de inscritos a una carrera. Método. Estudio transversal en aficionados de 18-64 años. Encuesta digital con módulos de IPAQ, PARQ+ y STEP. Muestreo aleatorio sistemático con n=510, para una inactividad física esperada de 35% (±5%). Se evaluó nivel de actividad física, consumo de alcohol (peligroso), de fruta, verdura, tabaco y sal, y readiness. Resultados. El cumplimiento de actividad física fue 97,4%; 2,4% consume nivel óptimo de fruta o verdura (diferencias por edad, sexo y estrato), 3,7% fuma y 44,1% consumo peligroso de alcohol. El 19,8% reportó PARQ+ positivo y 5,7% requiere supervisión. Hay diferencias por trabajo y estudio. Discusión. Los aficionados cumplen el nivel de actividad física; pero no de otros factores. Una estrategia de seguridad en el atletismo de calle es evaluar los factores de riesgo relacionados con el estilo de vida así como el readiness.

Fetal testosterone influences sexually dimorphic gray matter in the human brain

In nonhuman species, testosterone is known to have permanent organizing effects early in life that predict later expression of sex differences in brain and behavior. However, in humans, it is still unknown whether such mechanisms have organizing effects on neural sexual dimorphism. In human males, we show that variation in fetal testosterone (FT) predicts later local gray matter volume of specific brain regions in a direction that is congruent with sexual dimorphism observed in a large independent sample of age-matched males and females from the NIH Pediatric MRI Data Repository. Right temporoparietal junction/posterior superior temporal sulcus (RTPJ/pSTS), planum temporale/parietal operculum (PT/PO), and posterior lateral orbitofrontal cortex (plOFC) had local gray matter volume that was both sexually dimorphic and predicted in a congruent direction by FT. That is, gray matter volume in RTPJ/pSTS was greater for males compared to females and was positively predicted by FT. Conversely, gray matter volume in PT/PO and plOFC was greater in females compared to males and was negatively predicted by FT. Subregions of both amygdala and hypothalamus were also sexually dimorphic in the direction of Male > Female, but were not predicted by FT. However, FT positively predicted gray matter volume of a non-sexually dimorphic subregion of the amygdala. These results bridge a long-standing gap between human and nonhuman species by showing that FT acts as an organizing mechanism for the development of regional sexual dimorphism in the human brain.

TRY: a global database of plant traits

Plant traits – the morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs – determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity. Trait data thus represent the raw material for a wide range of research from evolutionary biology, community and functional ecology to biogeography. Here we present the global database initiative named TRY, which has united a wide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far 93 trait databases have been contributed. The data repository currently contains almost three million trait entries for 69 000 out of the world's 300 000 plant species, with a focus on 52 groups of traits characterizing the vegetative and regeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first data analysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges of variation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation is also documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetation models, capture a substantial fraction of the observed variation – but for several traits most variation occurs within PFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented by state variables rather than fixed parameter values. The improved availability of plant trait data in the unified global database is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities for synthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrial vegetation in Earth system models.

Agenda social nos territórios pacificados: um estudo sobre o Programa Territórios da Paz à luz da construção teórica em gestão social

O objetivo desta pesquisa foi analisar o Programa de Gestão Social em Territórios Pacificados – Territórios da Paz à luz da construção teórica da Gestão Social na academia. Com base na literatura sobre Gestão Social, buscou-se identificar as diferentes vertentes que orientam a sua discussão. Somado a isto, foram discutidos ao longo do referencial teórico questões que favorecem o entendimento do contexto no qual está inserido o Programa Territórios da Paz, tais como as favelas, política de segurança pública e o projeto de pacificação em curso na cidade do Rio de Janeiro. Tendo em vista o discurso adotado pelo Programa Territórios da Paz, optou-se por analisa-lo a partir de algumas categorias de avaliação de processos participativos deliberativos, quais sejam: Processos de Discussão, Inclusão, Pluralismo e Bem Comum. Os dados foram coletados, em um primeiro momento, por meio de pesquisa bibliográfica. Em seguida, foram realizadas entrevistas junto aos gestores sociais responsáveis pela condução do programa estudado nos diferentes territórios. Em suma, os resultados apontam para a existência de espaços para discussão, contudo sem capacidade deliberativa. Em alguns momentos, as características do que foi denominado um Programa de Gestão Social se aproximam das características da Gestão Estratégica, cujo arcabouço conceitual e instrumental se apoia sobre mecanismos de tomada de decisão baseados na hierarquia e conhecimento técnico.

Empilhamento sísmico por superfície de reflexão comum: um novo algoritmo usando otimização global e local

O método de empilhamento sísmico por Superfície de Reflexão Comum (ou empilhamento SRC) produz a simulação de seções com afastamento nulo (NA) a partir dos dados de cobertura múltipla. Para meios 2D, o operador de empilhamento SRC depende de três parâmetros que são: o ângulo de emergência do raio central com fonte-receptor nulo (β₀), o raio de curvatura da onda ponto de incidência normal (R_NIP) e o raio de curvatura da onda normal (R_N). O problema crucial para a implementação do método de empilhamento SRC consiste na determinação, a partir dos dados sísmicos, dos três parâmetros ótimos associados a cada ponto de amostragem da seção AN a ser simulada. No presente trabalho foi desenvolvido uma nova sequência de processamento para a simulação de seções AN por meio do método de empilhamento SRC. Neste novo algoritmo, a determinação dos três parâmetros ótimos que definem o operador de empilhamento SRC é realizada em três etapas: na primeira etapa são estimados dois parâmetros (β°₀ e R°_NIP) por meio de uma busca global bidimensional nos dados de cobertura múltipla. Na segunda etapa é usado o valor de β°₀ estimado para determinar-se o terceiro parâmetro (R°_N) através de uma busca global unidimensional na seção AN resultante da primeira etapa. Em ambas etapas as buscas globais são realizadas aplicando o método de otimização Simulated Annealing (SA). Na terceira etapa são determinados os três parâmetros finais (β₀, R_NIP e R_N) através uma busca local tridimensional aplicando o método de otimização Variable Metric (VM) nos dados de cobertura múltipla. Nesta última etapa é usado o trio de parâmetros (β°₀, R°_NIP, R°_N) estimado nas duas etapas anteriores como aproximação inicial. Com o propósito de simular corretamente os eventos com mergulhos conflitantes, este novo algoritmo prevê a determinação de dois trios de parâmetros associados a pontos de amostragem da seção AN onde há intersecção de eventos. Em outras palavras, nos pontos da seção AN onde dois eventos sísmicos se cruzam são determinados dois trios de parâmetros SRC, os quais serão usados conjuntamente na simulação dos eventos com mergulhos conflitantes. Para avaliar a precisão e eficiência do novo algoritmo, este foi aplicado em dados sintéticos de dois modelos: um com interfaces contínuas e outro com uma interface descontinua. As seções AN simuladas têm elevada razão sinal-ruído e mostram uma clara definição dos eventos refletidos e difratados. A comparação das seções AN simuladas com as suas similares obtidas por modelamento direto mostra uma correta simulação de reflexões e difrações. Além disso, a comparação dos valores dos três parâmetros otimizados com os seus correspondentes valores exatos calculados por modelamento direto revela também um alto grau de precisão. Usando a aproximação hiperbólica dos tempos de trânsito, porém sob a condição de R_NIP = R_N, foi desenvolvido um novo algoritmo para a simulação de seções AN contendo predominantemente campos de ondas difratados. De forma similar ao algoritmo de empilhamento SRC, este algoritmo denominado empilhamento por Superfícies de Difração Comum (SDC) também usa os métodos de otimização SA e VM para determinar a dupla de parâmetros ótimos (β₀, R_NIP) que definem o melhor operador de empilhamento SDC. Na primeira etapa utiliza-se o método de otimização SA para determinar os parâmetros iniciais β°₀ e R°_NIP usando o operador de empilhamento com grande abertura. Na segunda etapa, usando os valores estimados de β°₀ e R°_NIP, são melhorados as estimativas do parâmetro R_NIP por meio da aplicação do algoritmo VM na seção AN resultante da primeira etapa. Na terceira etapa são determinados os melhores valores de β°₀ e R°_NIP por meio da aplicação do algoritmo VM nos dados de cobertura múltipla. Vale salientar que a aparente repetição de processos tem como efeito a atenuação progressiva dos eventos refletidos. A aplicação do algoritmo de empilhamento SDC em dados sintéticos contendo campos de ondas refletidos e difratados, produz como resultado principal uma seção AN simulada contendo eventos difratados claramente definidos. Como uma aplicação direta deste resultado na interpretação de dados sísmicos, a migração pós-empilhamento em profundidade da seção AN simulada produz uma seção com a localização correta dos pontos difratores associados às descontinuidades do modelo.

Avaliação geofísica e geológica de um porção de quebra de talude da Bacia do Jequitinhonha

A utilização dos métodos de reflexão sísmica na exploração e desenvolvimento de reservatórios de hidrocarbonetos ocorre devido à sua vasta e densa amostragem, tanto em área quanto em profundidade, aliada ao refinamento de técnicas para o tratamento dos dados de reflexão sísmica, a partir destes dados, são geradas seções sísmicas, que após a aplicação de tratamento adequado, são utilizadas na interpretação dos estratos e/ou estruturas geológicas da subsuperfície. Neste trabalho é feita uma análise Geofísica Geológica de duas linhas sísmicas reais 2D marinhas da porção de quebra de talude da Bacia do Jequitinhonha. Para tanto, foi realizado um conjunto de processamento sísmico com objetivo de atenuar as reflexões múltiplas comuns em dados marinhos, além disso, foram estimados os modelos de velocidade em profundidade, utilizados para determinação das seções sísmicas migradas em profundidade. Nestas foram identificadas as superfícies refletoras. Através da análise dessas superfícies foram feitas as marcações de sismofácies, com base nos conceitos iniciais da sismoestratigrafia, com a finalidade de avaliar a qualidade do produto derivado do processamento sísmico, empregado neste estudo, para uma interpretação sismoestratigráfica, a qual está fundamentada na análise dos padrões de terminações dos refletores e padrão interno das sismofácies.

Internet based multicenter study for thoracolumbar injuries: a new concept and preliminary results

This article reports about the internet based, second multicenter study (MCS II) of the spine study group (AG WS) of the German trauma association (DGU). It represents a continuation of the first study conducted between the years 1994 and 1996 (MCS I). For the purpose of one common, centralised data capture methodology, a newly developed internet-based data collection system ( http://www.memdoc.org ) of the Institute for Evaluative Research in Orthopaedic Surgery of the University of Bern was used. The aim of this first publication on the MCS II was to describe in detail the new method of data collection and the structure of the developed data base system, via internet. The goal of the study was the assessment of the current state of treatment for fresh traumatic injuries of the thoracolumbar spine in the German speaking part of Europe. For that reason, we intended to collect large number of cases and representative, valid information about the radiographic, clinical and subjective treatment outcomes. Thanks to the new study design of MCS II, not only the common surgical treatment concepts, but also the new and constantly broadening spectrum of spine surgery, i.e. vertebro-/kyphoplasty, computer assisted surgery and navigation, minimal-invasive, and endoscopic techniques, documented and evaluated. We present a first statistical overview and preliminary analysis of 18 centers from Germany and Austria that participated in MCS II. A real time data capture at source was made possible by the constant availability of the data collection system via internet access. Following the principle of an application service provider, software, questionnaires and validation routines are located on a central server, which is accessed from the periphery (hospitals) by means of standard Internet browsers. By that, costly and time consuming software installation and maintenance of local data repositories are avoided and, more importantly, cumbersome migration of data into one integrated database becomes obsolete. Finally, this set-up also replaces traditional systems wherein paper questionnaires were mailed to the central study office and entered by hand whereby incomplete or incorrect forms always represent a resource consuming problem and source of error. With the new study concept and the expanded inclusion criteria of MCS II 1, 251 case histories with admission and surgical data were collected. This remarkable number of interventions documented during 24 months represents an increase of 183% compared to the previously conducted MCS I. The concept and technical feasibility of the MEMdoc data collection system was proven, as the participants of the MCS II succeeded in collecting data ever published on the largest series of patients with spinal injuries treated within a 2 year period.

A reconstruction of atmospheric carbon dioxide and its stable carbon isotopic composition from the penultimate glacial maximum to the last glacial inception

The reconstruction of the stable carbon isotope evolution in atmospheric CO2 (δ13Catm), as archived in Antarctic ice cores, bears the potential to disentangle the contributions of the different carbon cycle fluxes causing past CO2 variations. Here we present a new record of δ13Catm before, during and after the Marine Isotope Stage 5.5 (155 000 to 105 000 yr BP). The dataset is archived on the data repository PANGEA® (www.pangea.de) under 10.1594/PANGAEA.817041. The record was derived with a well established sublimation method using ice from the EPICA Dome C (EDC) and the Talos Dome ice cores in East Antarctica. We find a 0.4‰ shift to heavier values between the mean δ13Catm level in the Penultimate (~ 140 000 yr BP) and Last Glacial Maximum (~ 22 000 yr BP), which can be explained by either (i) changes in the isotopic composition or (ii) intensity of the carbon input fluxes to the combined ocean/atmosphere carbon reservoir or (iii) by long-term peat buildup. Our isotopic data suggest that the carbon cycle evolution along Termination II and the subsequent interglacial was controlled by essentially the same processes as during the last 24 000 yr, but with different phasing and magnitudes. Furthermore, a 5000 yr lag in the CO2 decline relative to EDC temperatures is confirmed during the glacial inception at the end of MIS5.5 (120 000 yr BP). Based on our isotopic data this lag can be explained by terrestrial carbon release and carbonate compensation.

Depression in early adulthood: prevalence and psychosocial correlates among young Swiss men

QUESTION UNDER STUDY Depression in young adults is common, but data from Switzerland are scarce. Our study gives a point prevalence estimate of depression in young Swiss men, and describes the association between depression and education, material and social resources, and job/school satisfaction. METHODS We used data from the cross-sectional Swiss Federal Surveys of Adolescents (ch-x) from 2010 to 2011 comprising 9,066 males aged between 18 and 25 years. Depression was assessed by means of self-reports using the Patient Health Questionnaire (PHQ-9). Persons were categorised into three groups: depression, subthreshold depression, and no depression. We assessed the relationship between depression and education, material and social resources, and satisfaction with job/school. Differences according to depression status were tested with chi-square tests for categorical variables and one-way analyses of variance for continuous variables. RESULTS Point prevalence of depression (3.60%) and subthreshold depression (3.62%) was high. Poor mental health was associated with lower education in young adults (p <0.001), and with their parents' education (p = 0.024). Social resources in persons with depression and subthreshold depression were substantially reduced (i.e., social support and satisfaction with social relations; both p <0.001). Young men with depression and subthreshold depression also reported a current lack of satisfaction with job/school (p <0.001). CONCLUSIONS Prevalence of (subthreshold) depression is high in young Swiss men. Depression at this age might result in a bad long-term prognosis owing to its association with low satisfaction with job/school and low self-efficacy. Interventions should especially consider the lower social resources of young men with depression.

UNDERSTANDING NURSE CREATED COGNITIVE ARTIFACTS: PERSONALLY-CREATED-COGNITIVE-ARTIFACTS AS EXTERNAL REPRESENTATIONS OF DISTRIBUTED COGNITION

Manuscript 1: “Conceptual Analysis: Externalizing Nursing Knowledge” We use concept analysis to establish that the report tool nurses prepare, carry, reference, amend, and use as a temporary data repository are examples of cognitive artifacts. This tool, integrally woven throughout the work and practice of nurses, is important to cognition and clinical decision-making. Establishing the tool as a cognitive artifact will support new dimensions of study. Such studies can characterize how this report tool supports cognition, internal representation of knowledge and skills, and external representation of knowledge of the nurse. Manuscript 2: “Research Methods: Exploring Cognitive Work” The purpose of this paper is to describe a complex, cross-sectional, multi-method approach to study of personal cognitive artifacts in the clinical environment. The complex data arrays present in these cognitive artifacts warrant the use of multiple methods of data collection. Use of a less robust research design may result in an incomplete understanding of the meaning, value, content, and relationships between personal cognitive artifacts in the clinical environment and the cognitive work of the user. Manuscript 3: “Making the Cognitive Work of Registered Nurses Visible” Purpose: Knowledge representations and structures are created and used by registered nurses to guide patient care. Understanding is limited regarding how these knowledge representations, or cognitive artifacts, contribute to working memory, prioritization, organization, cognition, and decision-making. The purpose of this study was to identify and characterize the role a specific cognitive artifact knowledge representation and structure as it contributed to the cognitive work of the registered nurse. Methods: Data collection was completed, using qualitative research methods, by shadowing and interviewing 25 registered nurses. Data analysis employed triangulation and iterative analytic processes. Results: Nurse cognitive artifacts support recall, data evaluation, decision-making, organization, and prioritization. These cognitive artifacts demonstrated spatial, longitudinal, chronologic, visual, and personal cues to support the cognitive work of nurses. Conclusions: Nurse cognitive artifacts are an important adjunct to the cognitive work of nurses, and directly support patient care. Nurses need to be able to configure their cognitive artifact in ways that are meaningful and support their internal knowledge representations.

Oxygen isotope composition of benthic and planktonic foraminifera from ODP Holes 146-893A and 167-1017B

The detailed structure and timing of the penultimate deglaciation are insufficiently defined yet critical for understanding mechanisms responsible for abrupt climate change. Here we present oxygen isotope records (from planktonic and benthic foraminifera) at unprecedented resolution encompassing late marine oxygen isotope stage (MIS) 6 and Termination II (ca. 150-120 ka) from the Santa Barbara Basin, supported by additional southern California margin records, a region highly sensitive to millennial-scale climate oscillations during the last deglaciation. These records reveal millennial- and centennial-scale climate variability throughout the interval, including an interstadial immediately preceding the deglaciation, a brief warm event near the beginning of Termination II, and a Bølling-Allerød-Younger Dryas-like climate oscillation midway through the deglaciation. Recognition of these events in an oxygen isotope record from a 230Th-dated stalagmite allows the adoption of this radiometric chronology for the California margin records. This chronology supports the Milankovitch theory of deglaciation. The suborbital history of climate variability during Termination II may account for records of early deglaciation.

Occurrence of hiatuses PH and NH 1 through NH 7 in DSDP holes

Miocene paleoceanographic evolution exhibits major changes resulting from the opening and closing of passages, the subsequent changes in oceanic circulation, and development of major Antarctic glaciation. The consequences and timing of these events can be observed in variations in the distribution of deep-sea hiatuses, sedimentation patterns, and biogeographic distribution of planktic organisms. The opening of the Drake Passage in the latest Oligocene to early Miocene (25-20 Ma) resulted in the establishment of the deep circumpolar current, which led to thermal isolation of Antarctica and increased global cooling. This development was associated with a major turnover in planktic organisms, resulting in the evolution of Neogene assemblages and the eventual extinction of Paleogene assemblages. The erosive patterns of two widespread hiatuses (PH, 23.0-22.5 Ma; and NH 1, 20-18 Ma) indicate that a deep circumequatorial circulation existed at this time, characterized by a broad band of carbonate-ooze deposition. Siliceous sedimentation was restricted to the North Atlantic and a narrow band around Antarctica. A major reorganization in deep-sea sedimentation and hiatus distribution patterns occurred near the early/middle Miocene boundary, apparently resulting from changes in oceanic circulation. Beginning at this time, deep-sea erosion occurred throughout the Caribbean (hiatus NH 2, 16-15 Ma), suggesting disruption of the deep circumequatorial circulation and northward deflection of deep currents, and/or intensification of the Gulf Stream. Sediment distribution patterns changed dramatically with the sudden appearance of siliceous-ooze deposition in the marginal and east equatorial North Pacific by 16.0 to 15.5 Ma, coincident with the decline of siliceous sedimentation in the North Atlantic. This silica switch may have been caused by the introduction of Norwegian Overflow Water into the North Atlantic acting as a barrier to outcropping of silica-rich Antarctic Bottom Water. The main aspects of the present oceanic circulation system and sediment distribution pattern were established by 13.5 to 12.5 Ma (hiatus NH 3), coincident with the establishment of a major East Antarctic ice cap. Antarctic glaciation resulted in a broadening belt of siliceous-ooze deposition around Antarctica, increased siliceous sedimentation in the marginal and east equatorial North Pacific and Indian Oceans, and further northward restriction of siliceous sediments in the North Atlantic. Periodic cool climatic events were accompanied by lower eustatic sea levels and widespread deep-sea erosion at 12 to 11 Ma (NH 4), 10 to 9 Ma (NH 5), 7.5 to 6.2 Ma (NH 6), and 5.2 to 4.7 Ma (NH 7).

(Table 1) Age model for ODP Site 175-1077 based on oxygen isotopes of Globigerinoides ruber pink

Palynological records from the Congo fan reveal environmental change in equatorial Africa occurring 1.05 Ma ago, 100 k.y. before the mid-Pleistocene climatic shift at 0.9 Ma. Prior to 1.05 Ma, a glacial-interglacial rhythm is not obvious in the African vegetation variation. Afterwards, Podocarpus spread in the mountains of central Africa mainly during glacials and Congo River discharge decreased. The sequence of vegetation variation associated with the mid-Pleistocene glacials and interglacials differed from that observed during the late Pleistocene. Between 0.9 and 0.6 Ma, interglacials were characterized by warm dry conditions and glacials were characterized by cool humid conditions, while during the past 0.2 Ma glacials were cold and dry and interglacials warm and humid. Our data indicate that before the Northern Hemisphere ice caps dramatically increased in size (0.9-0.6 Ma), low-latitude climate forcing and response in the tropics played an important role in the initiation of 100 k.y. ice-age cycles. During the mid to late Pleistocene, however, the climate conditions in the tropics were increasingly influenced by the glacial-interglacial variations of continental ice sheets.