Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha

Ensifer medicae Di28 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Medicago spp. Di28 was isolated in 1998 from a nodule recovered from the roots of M. polymorpha growing in the south east of Sardinia (Italy). Di28 is an effective microsymbiont of the annual forage legumes M. polymorpha and M. murex and is capable of establishing a partially effective symbiotic association with the perennial M. sativa. Here we describe the features of E. medicae Di28, together with genome sequence information and its annotation. The 6,553,624 bp standard draft genome is arranged into 104 scaffolds of 104 contigs containing 6,394 protein-coding genes and 75 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia

Burkholderia sp. strain WSM2232 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod that was trapped in 2001 from acidic soil collected from Karijini National Park (Australia) using Gastrolobium capitatum as a host. WSM2232 was effective in nitrogen fixation with G. capitatum but subsequently lost symbiotic competence during long-term storage. Here we describe the features of Burkholderia sp. strain WSM2232, together with genome sequence information and its annotation. The 7,208,311 bp standard-draft genome is arranged into 72 scaffolds of 72 contigs containing 6,322 protein-coding genes and 61 RNA-only encoding genes. The loss of symbiotic capability can now be attributed to the loss of nodulation and nitrogen fixation genes from the genome. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598

Strains of a pink-pigmented Methylobacterium sp. are effective nitrogen- (N2) fixing microsymbionts of species of the African crotalarioid genus Listia. Strain WSM2598 is an aerobic, motile, Gram-negative, non-spore-forming rod isolated in 2002 from a Listia bainesii root nodule collected at Estcourt Research Station in South Africa. Here we describe the features of Methylobacterium sp. WSM2598, together with information and annotation of a high-quality draft genome sequence. The 7,669,765 bp draft genome is arranged in 5 scaffolds of 83 contigs, contains 7,236 protein-coding genes and 18 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 G enomic E ncyclopedia for B acteria and A rchaea- R oot N odule B acteria (GEBA-RNB) project.

Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B

Mesorhizobium loti strain R88B was isolated in 1993 in the Rocklands range in Otago, New Zealand from a Lotus corniculatus root nodule. R88B is an aerobic, Gram-negative, non-spore-forming rod. This report reveals the genome of M. loti strain R88B contains a single scaffold of size 7,195,110 bp which encodes 6,950 protein-coding genes and 66 RNA-only encoding genes. This genome does not harbor any plasmids but contains the integrative and conjugative element ICEMlSym(R7A), also known as the R7A symbiosis island, acquired by horizontal gene transfer in the field environment from M. loti strain R7A. It also contains a mobilizable genetic element ICEMladh(R88B), that encodes a likely adhesin gene which has integrated downstream of ICEMlSym(R7A), and three acquired loci that together allow the utilization of the siderophore ferrichrome. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037

Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus. NZP2037 is an aerobic, Gram negative, non-spore-forming rod. This report reveals that the genome of M. loti strain NZP2037 does not harbor any plasmids and contains a single scaffold of size 7,462,792 bp which encodes 7,318 protein-coding genes and 70 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A

Mesorhizobium loti strain R7A was isolated in 1993 in Lammermoor, Otago, New Zealand from a Lotus corniculatus root nodule and is a reisolate of the inoculant strain ICMP3153 (NZP2238) used at the site. R7A is an aerobic, Gram-negative, non-spore-forming rod. The symbiotic genes in the strain are carried on a 502-kb integrative and conjugative element known as the symbiosis island or ICEMlSym(R7A). M. loti is the microsymbiont of the model legume Lotus japonicus and strain R7A has been used extensively in studies of the plant-microbe interaction. This report reveals that the genome of M. loti strain R7A does not harbor any plasmids and contains a single scaffold of size 6,529,530 bp which encodes 6,323 protein-coding genes and 75 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

A panel CUSUM test of the null of cointegration

This paper proposes a simple residual-based panel CUSUM test of the null hypothesis of cointegration. The test has a limiting normal distribution that is free of nuisance parameters, it is robust to heteroskedasticity and it allows for mixtures of cointegrated and spurious alternatives. Our Monte Carlo results suggest that the test has small-size distortions and reasonable power. In our empirical application to international R&D spillovers, we present evidence suggesting that total factor productivity is heterogeneously cointegrated with foreign and domestic R&D capital stocks. © Blackwell Publishing Ltd, 2005.

Compactação do solo e produção de cultivares de milho em latossolo vermelho: II - intervalo hídrico ótimo e sistema radicular

Este trabalho teve como objetivo avaliar, no campo, a resposta de duas cultivares de milho em um Latossolo Vermelho, em seis níveis de compactação, quanto ao desenvolvimento do sistema radicular, bem como caracterizar a compactação do solo a partir do intervalo hídrico ótimo (IHO). O experimento foi realizado em faixas, no delineamento de blocos completos casualizados, com quatro repetições. Utilizaram-se os híbridos de milho DKB 390 e DAS 2B710. Após a semeadura do milho, coletaram-se amostras indeformadas de solo para a determinação de propriedades físicas do solo e do IHO. No estádio do pendoamento do milho, retiraram-se três amostras por parcela na entrelinha, nas profundidades de 0-10, 10-20 e 20-30 cm, em cada parcela, para determinação de diâmetro médio, densidade do comprimento radicular e massa de matéria seca das raízes. O IHO foi igual a zero quando o solo atingiu a densidade crítica de 1,46 kg dm-3, correspondente a 92 % da densidade máxima do solo. Com a compactação, houve aumento da produção de matéria seca das raízes, da densidade do comprimento radicular e do diâmetro radicular e na profundidade de 0-10 cm, o aumento da massa de matéria seca e da densidade radicular se dá até a resistência do solo à penetração de 1,23 e 1,43 MPa, respectivamente. Houve correlação negativa entre a massa de matéria seca, a densidade e o diâmetro radicular com a produtividade do milho irrigado, mostrando que essas variáveis são bons indicadores da compactação do solo.

Fenologics characteristics of the Siciliano lemon tree on two rootstocks influenced by liming and boron addition

O presente estudo foi desenvolvido na UNESP/Botucatu, São Paulo, Brasil, num solo identificado como Oxisol, onde foram plantadas mudas de limoeiro Siciliano (C. limon) enxertadas em laranjeira Azeda (C. aurantium) e em limoeiro Cravo (C. limonia). O experimento consistiu em três níveis de saturação por bases (50%, 70% e 90%) e três doses de boro (0,5; 1,5 e 4,5 mg dm-3) no plantio em esquema fatorial de 3x3x2, com quatro repetições. Houve diferentes comportamentos entre os porta-enxertos no que se refere à composição mineral de folhas de limoeiro Siciliano , bem como, no desenvolvimento do sistema radicular, sendo maior na laranjeira azeda em relação ao limoeiro cravo. Não houve nenhum efeito na interação de níveis de saturação por bases e doses de boro para nenhum dos parâmetros avaliados.

Reguladores vegetais no enraizamento e desenvolvimento de gemas de cana-de-açúcar tratadas termicamente

Este trabalho teve por finalidade estudar o efeito de reguladores vegetais sobre a emergência e desenvolvimento inicial de gemas de cana-de-açúcar 'IAC 52-150', submetidas ao tratamento térmico por via úmida. Para tanto, as gemas foram tratadas durante uma hora em soluções de ácido indolilacético (IAA) e ácido naftalenacêtico (NAA), nas concentrações de 10, 25, 50 e 100 ppm, em ácido indolbutírico (IBA) nas concentrações de 10 e 25 ppm e em água pura (testemunha). Imediatamente após o tratamento, as gemas foram plantadas em germinadores de areia. IBA 10 ppm tendeu a favorecer a emergência e o enraizamento das gemas. IAA não afetou a emergência, enraizamento e peso da parte aérea da cana-de-açúcar. Aplicação de NAA 100 ppm reduziu a porcentagem de emergência e o peso da parte aérea do cultivar IAC 52-150.

Compressibilidade do solo e sistema radicular da cana-de-açúcar em manejo com e sem controle de tráfego

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Acidez do solo e produtividade da soja em função de calagem e rotação de culturas

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Crescimento radicular e absorção de nutrientes de cultivares de arroz submetidos ao alumínio em solução nutritiva

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Podridão vermelha da raiz em variedades de soja associada a níveis de irrigação e de compactação do solo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Desenvolvimento radicular e aéreo, nutrição e eficiência de absorção de macronutrientes e zinco por cultivares de arroz de terras altas afetadas pela adubação fosfatada

In Brazil, phosphorus availability is one factor that that more limit yield of upland rice under rainfed system. Then, better understanding of cultivars development at phosphorus soil fertilization is very important in the production systems making this more sustainable. The objective was to evaluate the influence of phosphorus doses applied to the soil over the root length, root and shoot dry matter, concentration and content of macronutrient and zinc in shoot and root as well as the efficiency of nutrient uptake per meter root of upland cultivars of intermediate and modern groups. The experiment was carried out in greenhouse conditions in a completely randomized design in factorial scheme 4 x 4. Treatments were four levels of P fertilization applied at the soil (0, 50, 100 and 200 mg dm(-3) of P) and four upland rice cultivars (Maravilha - modern group, IAC-201, IAC-202 and Carajas - intermediate group). There is increase in phosphorus availability in the soil with increasing levels of P fertilization. Under low phosphorus availability, cultivars of the intermediate group have better shoots and root system development in relation to the modern cultivar group. Level of phosphorus affected nutrients contents in shoots and root system of upland rice cultivars. The increasing phosphorus fertilization increased uptake of nutrients per meter of root; and although under higher phosphorus availability there was a greater root growth, in low phosphorus availability root growth was greater at the expense of shoot growth.