Past, present and future - assessing changes in aquatic environments using subfossil diatoms

The deterioration of surface waters is one of the most important issues in the environmental management of the European Union. Thus, the EU Water Framework Directive 2000/60/EC (WFD) requires “good ecological and chemical status” of surface waters by 2015 allowing only a slight departure from ecological reference conditions characterized by the biological communities typical for the conditions of minimal anthropogenic impact. The WFD requires the determination of ecological reference conditions and the present ecological status of surface waters. To meet this legislative demand, sedimentary diatom assemblages were used in these studies with various methods 1) to assess natural and human activity induced environmental changes, 2) to characterize background conditions 3) to evaluate the present ecological status and 4) to predict the future of the water bodies in the light of palaeolimnological data. As the WFD refers to all surface waters, both coastal and inland sites were included. Two long and two short sediment cores from the Archipelago Sea in the northern Baltic Sea were examined for their siliceous microfossils in order to assess (1) the Holocene palaeoenvironmental history and (2) the recent eutrophication of the area. The diatom record was divided into local diatom assemblage zones (LDAZ, long cores) and diatom assemblage zones (DAZ, short cores). Locally weighted weighted averaging regression and calibration (LWWA) was applied for the quantitative reconstruction of past TN concentrations (short cores). An age model for the long cores was constructed by using independent palaeomagnetic and AMS-14C methods. The short cores were dated using radiometric (210Pb, 226Ra and 137Cs) methods. The long cores date back to the early history of the Archipelago Sea, which was freshwater – no salinity increase referable to the brackish phase of the Yoldia Sea is recognized. The nutrient status of the lacustrine phase was slightly higher in the Archipelago Sea than in the Baltic Proper. Initial brackish-water influence is observed at 8 150 ±80 cal. BP (LDAZ4), but fully brackish conditions were established at 7 700 ±80 cal. BP (LDAZ5). The diatom assemblages indicate increasing salinity, warming climate and possible eutrophic conditions during the lacustrine to brackish-water transition. The decreasing abundance of Pseudosolenia calcar-avis (Schultze) Sundström and the increasing abundance of the ice-cover indicator species Pauliella taeniata (Grunow) Round and Basson indicate decreasing salinity and climatic cooling after ca. 5 000 cal. BP. Signs of eutrophication are visible in the most recent diatom assemblage zones of both short cores. Diatom-inferred total nitrogen (DI-TN) reconstructions partially fail to trace the actual measured total nitrogen concentrations especially from the late 1980s to the mid 1990s. This is most likely due to the dominating diatom species Pauliella taeniata, Thalassiosira levanderi Van Goor and Fragilariopsis cylindrus (Grunow) W. Krieger being more influenced by factors such as the length of the ice-season rather than nutrient concentrations. It is concluded that the diatom assemblages of the study sites are principally governed by climate fluctuations, with a slight influence of eutrophication visible in the most recent sediments. There are indications that global warming, with reduced ice cover, could impact the spring blooming diatom species composition in the Archipelago Sea. In addition, increased sediment accumulation in the early 90s coincides with the short ice-seasons suggesting that warming climate with decreasing ice-cover may increase sedimentation in the study area. The diverse diatom assemblages dominated by benthic species (54 %) in DAZ1 in the Käldö Fjärd core can be taken as background diatom assemblages for the Archipelago Sea. Since then turbidity has increased and the diatom assemblages have been dominated by planktonic diatoms from around the mid 1800s onwards. The reconstructed reference conditions for the total nitrogen concentrations fluctuate around 400 μg l-1. Altogether two short sediment cores and eight short cores for top-bottom analysis were retrieved from Lake Orijärvi and Lake Määrjärvi to assess the impact of the acid mine drainage (AMD) derived metals from the Orijärvi mine tailings on the diatom communities of the lakes. The Cu (Pb, Zn) mine of Orijärvi (1757 – 1956) was the first one in Finland where flotation techniques (1911 – 1955) were used to enrich ore and large quantities of tailings were produced. The AMD derived metal impact to the lakes was found to be among the heaviest thus far recorded in Finland. Concentrations of Cu, Pb and Zn in Lake Orijärvi sediments are two to three orders of magnitude higher than background values. The metal inputs have affected Lake Orijärvi and Lake Määrjärvi diatom communities at the community levels through shifts in dominant taxa (both lakes) and at the individual level through alteration in frustule morphology (Lake Orijärvi). At present, lake water still has elevated heavy metal levels, indicating that the impact from the tailings area continues to affect both lakes. Lake Orijärvi diatom assemblages are completely dominated by benthic species and are lacking planktonic diatoms. In Lake Määrjärvi the proportion of benthic and tychoplanktonic diatoms has increased and the planktonic taxa have decreased in abundance. Achnanthidium minutissimum Kützing and Brachysira vitrea (Grun.) R. Ross in Hartley were the most tolerant species to increased metal concentrations. Planktonic diatoms are more sensitive to metal contamination than benthic taxa, especially species in the genus Cyclotella (Kützing) Brébisson. The ecological reference conditions assessed in this study for Lake Orijärvi and Lake Määrjärvi comprise diverse planktonic and benthic communitites typical of circumneutral oligotrophic lakes, where the planktonic diatoms belonging to genera Cyclotella , Aulacoseira Thwaites, Tabellaria Ehrenberg and Asterionella Hassall dominate in relative abundances up to ca. 70%. The benthic communities are more diverse than the planktonic consisting of diatoms belonging to the genera Achnanthes Bory, Fragilaria Lyngbye and Navicula St. Vincent. This study clearly demonstrates that palaeolimnological methods, especially diatom analysis, provide a powerful tool for the EU Water Frame Work Directive for defining reference conditions, natural variability and current status of surface waters. The top/bottom approach is a very useful tool in larger-scale studies needed for management purposes. This “before and after” type of sediment sampling method can provide a very time and cost effective assessment of ecological reference conditions of surface waters.

Leaching of Picloram in ultisol under different rainfall volumes

The present study aimed to evaluate the leaching potential of Picloram in Ultisol columns under different rainfall amounts. For such, 30 treatments were evaluated (one soil associated with three levels of rainfall and ten depths).The experiments were arranged in a split-plot design, in a completely randomized design, with four replications. PVC columns of 10 cm in diameter and 50 cm in length were filled with these soils, moistened, and placed upright for 48 hours to drain the excess water. The herbicide was applied and rainfall simulations were carried out at specified intensities, according to the treatments, to force Picloram leaching. After 72 hours, all the columns were arranged in a horizontal position and opened lengthwise. Then, soil sampling was carried out every 5 cm of depth for subsequent herbicide extraction and quantification and analysis by high performance liquid chromatography. The remaining soil samples were placed in plastic pots, and, at the respective depths, the indicator species Cucumis sativus was sown. Twenty-one days after the emergence (DAE) of the indicator plants, evaluations were conducted to verify the symptoms of toxicity caused by Picloram in the plants. It was concluded that Picloram leaching is directly dependent on the volume of rain applied. The herbicide reached the deepest regions in the soil with the highest intensity of rain. The results obtained by bioassay were in agreement with those found by liquid chromatography.

Sorption of oxadiazon in soils cultivated in the brazilian cerrado

The objective of this study was to evaluate oxadiazon sorption in different soils of the Brazilian Cerrado, highlighting the correlations of lethal doses of this herbicide capable of inhibiting 50% of the dry matter accumulation of the bio-indicator (LD50) among the chemical characteristics of the soil and its direct and indirect effects. The experiment was carried out in a greenhouse in a randomized block design and four repetitions. Each experimental unit consisted of a pot with increasing rates of oxadiazon and oat (Avena sativa), as the bio-indicator species. For sorption evaluation, washed sand and 22 soils (substrates) from Cerrado Brazilian's Alliaceae cultivated areas were used. LD50 and sorption ratio (SR) = [(LD50soil - LD50sand)/LD50sand] to the substrates were determined. Pearson correlation analysis was performed between the chemical characteristics of the substrates and the LD50 of oxadiazon. A path analysis was quantified, to deploy only the significant correlations estimated in direct and indirect effects of the characters on LD50, which is a basic variable. A more pronounced LD50 (528.09 g ha-1) for the Cerrado soil sample resulted in higher SR (> 53.00), while in the washed sand substrate, LD50 corresponded only to 9.74 g ha-1 of the oxadiazon (available in soil). It was concluded that oxadiazon sorption is influenced by the chemical characteristics of the soils, highlighting the correlation with pH (CaCl2), magnesium content, aluminum, organic matter, organic carbon, and aluminum saturation.

Habitat associations and breeding bird community composition within the city of Bristol, UK

Capsule: Different urban breeding bird communities are associated with different habitat types, but, although community species diversity varies significantly, total bird density does not. Aims: To investigate the association between breeding bird communities and habitats within Bristol, UK and how these communities vary in terms of species diversity and total bird abundance. Methods: Breeding density data for 70 species in the metropolitan area of Bristol, UK were subjected to de-trended correspondence analysis to identify the number of different communities present and their indicator species. These data were then used to identify patterns of habitat association with each community and differences in species richness and total bird density. Results: Three communities were identified: a rural community associated with woodland, managed grassland and inland water; a suburban community associated with buildings and residential gardens; and an intermediate community that shared some of these habitat characteristics. Species richness, but not total bird abundance, was lowest in the suburban community. Conclusion: The diversity of species in urban areas appears to be most dependent upon the availability of patches of natural and semi-natural habitats. Residential gardens support fewer species, but those species that are present may be found at high densities.

Assessing species’ habitat associations from occurrence records, standardised monitoring data and expert opinion: a test with British butterflies

Accurate knowledge of species’ habitat associations is important for conservation planning and policy. Assessing habitat associations is a vital precursor to selecting appropriate indicator species for prioritising sites for conservation or assessing trends in habitat quality. However, much existing knowledge is based on qualitative expert opinion or local scale studies, and may not remain accurate across different spatial scales or geographic locations. Data from biological recording schemes have the potential to provide objective measures of habitat association, with the ability to account for spatial variation. We used data on 50 British butterfly species as a test case to investigate the correspondence of data-derived measures of habitat association with expert opinion, from two different butterfly recording schemes. One scheme collected large quantities of occurrence data (c. 3 million records) and the other, lower quantities of standardised monitoring data (c. 1400 sites). We used general linear mixed effects models to derive scores of association with broad-leaf woodland for both datasets and compared them with scores canvassed from experts. Scores derived from occurrence and abundance data both showed strongly positive correlations with expert opinion. However, only for occurrence data did these fell within the range of correlations between experts. Data-derived scores showed regional spatial variation in the strength of butterfly associations with broad-leaf woodland, with a significant latitudinal trend in 26% of species. Sub-sampling of the data suggested a mean sample size of 5000 occurrence records per species to gain an accurate estimation of habitat association, although habitat specialists are likely to be readily detected using several hundred records. Occurrence data from recording schemes can thus provide easily obtained, objective, quantitative measures of habitat association.

Comparing species and measures of landscape structure as indicators of conservation importance

P>1. The use of indicators to identify areas of conservation importance has been challenged on several grounds, but nonetheless retains appeal as no more parsimonious approach exists. Among the many variants, two indicator strategies stand out: the use of indicator species and the use of metrics of landscape structure. While the first has been thoroughly studied, the same cannot be said about the latter. We aimed to contrast the relative efficacy of species-based and landscape-based indicators by: (i) comparing their ability to reflect changes in community integrity at regional and landscape spatial scales, (ii) assessing their sensitivity to changes in data resolution, and (iii) quantifying the degree to which indicators that are generated in one landscape or at one spatial scale can be transferred to additional landscapes or scales. 2. We used data from more than 7000 bird captures in 65 sites from six 10 000-ha landscapes with different proportions of forest cover in the Atlantic Forest of Brazil. Indicator species and landscape-based indicators were tested in terms of how effective they were in reflecting changes in community integrity, defined as deviations in bird community composition from control areas. 3. At the regional scale, indicator species provided more robust depictions of community integrity than landscape-based indicators. At the landscape scale, however, landscape-based indicators performed more effectively, more consistently and were also more transferable among landscapes. The effectiveness of high resolution landscape-based indicators was reduced by just 12% when these were used to explain patterns of community integrity in independent data sets. By contrast, the effectiveness of species-based indicators was reduced by 33%. 4. Synthesis and applications. The use of indicator species proved to be effective; however their results were variable and sensitive to changes in scale and resolution, and their application requires extensive and time-consuming field work. Landscape-based indicators were not only effective but were also much less context-dependent. The use of landscape-based indicators may allow the rapid identification of priority areas for conservation and restoration, and indicate which restoration strategies should be pursued, using remotely sensed imagery. We suggest that landscape-based indicators might often be a better, simpler, and cheaper strategy for informing decisions in conservation.

Taxon surrogates among Amazonian mammals: Can total species richness be predicted by single orders?

Limited financial sources and the difficulty in performing complete surveys, allied to the speed of habitat fragmentation and the urgent necessity in select conservation areas, create the necessity of using some methodologies which bypass these problems. One possibility is the use of surrogate taxa that might be used as indicator of others groups richness and even total richness of an area. We investigated if the use of surrogate taxon is useful among seven mammal orders in Amazon. We tested through Pearson`s correlation (Bonferroni`s adjusted) if (1) there was a correlation between richness of total species and some order; (2) there was a significant pair wise correlation between species richness of each order; and (3) the combination of two orders would give better results as a surrogate for the total richness. The correlations found, in general, were positive. It means that the increase in the richness of an order was followed by its increase in another order, as well as in the total species richness. Only Didelphimorphia was significantly correlated with the total species richness. In the pair wise analyses only one assembly, Primates and Artiodactyla, was significantly correlated with total richness. Since indicator species are more effective within taxonomic groups (life-history characteristics are likely to be more different among than within major taxonomic groups), we suggest that an indicator group might be chosen for each one. In this case, for mammals from Amazon, it would be Didelphimorphia. (C) 2008 Elsevier Ltd. All rights reserved.

Cysteine proteases of Trypanosoma (Megatrypanum) theileri: Cathepsin L-like gene sequences as targets for phylogenetic analysis, genotyping diagnosis

Although Trypanosoma theileri and allied trypanosomes are the most widespread trypanosomes in bovids little is known about proteolytic enzymes in these species. We have characterized genes encoding for cathepsin L-like (CATL) cysteine proteases from isolates of cattle, water buffalo and deer that largely diverged from homologues of other trypanosome species. Analysis of 78 CATL catalytic domain sequences from 22 T. theileri trypanosomes disclosed 6 genotypes tightly clustered together into the T. theileri clade. The CATL genes in these trypanosomes are organized in tandem arrays of similar to 1.7 kb located in 2 chromosomal bands of 600-720 kb. A diagnostic PCR assay targeting CATL sequences detected T. theileri of all genotypes from cattle, buffaloes and cervids and also from tabanid vectors. Expression of T. theileri cysteine proteases was demonstrated by proteolytic activity in gelatin gels and hydrolysis of Z-Phe-Arg-AMC substrate. Results from this work agree with previous data using ribosomal and spliced leader genes demonstrating that CATL gene sequences are useful for diagnosis, population genotyping and evolutionary studies of T. theileri trypanosomes. (c) 2010 Elsevier Ireland Ltd. All rights reserved.

Atividade rizosférica de solo tratado com herbicida durante processo de remediação por Stizolobium aterrimum

This study aimed to evaluate the soil microbiota activity associated to S. aterrimum rhizosphere, during the phytoremediation process of a soil contaminated with trifloxysulfuron-sodium. S. aterrimum was cultivated in vases (6, 0 L) filled with soil, after trifloxysulfuron-sodium, at 7.5 g ha -1, was applied or not. Every 15 days after sowing (DAS), rhizospheric soil was collected for soil microbial respiration (amount of evolved CO 2) and microbial biomass carbon (MBC) analysis. To determine herbicide residues in the soil samples, after phytoremediation, Sorghum bicolor L. was cultivated as an indicator species, in addition to high performance liquid chromatography (HPLC) analysis. The microbiota associated to S. aterrimum rhizosphere showed to be sensitive to trifloxysulfuron-sodium and may be used as a microbiological indicator of disturbances caused by this herbicide in the environment. Regarding time for remediation, 45 days of development is enough for S. aterrimum to reduce residual trifloxysulfuron- sodium to a level not able to cause toxicity to the indicator plant.

Biodegradação de naftaleno, fenantreno e diesel por isolados do gênero Burkholderia da Amazônia

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Efeito do uso do hábitat sobre a comunidade de Gerromorpha (Heteroptera) em uma área de transição Amazônia-cerrado, Mato Grosso, Brasil

Os Heteroptera aquáticos e semi-aquáticos consistem em três infra-ordens monofiléticas, os Gerromorpha, Nepomorpha e Leptopodomorpha. No Brasil, existe um número bastante reduzido de literatura sobre este grupo, onde o estado de Minas Gerais concentra o maior número de estudos. Este trabalho objetivou determinar o efeito da intensidade de uso da terra sobre a comunidade de heterópteros aquáticos, infra-ordem Gerromorpha. A área de estudo está localizada na Fazenda Tanguro, estado do Mato Grosso, em uma faixa de transição entre os biomas Amazônia e Cerrado. Foram realizadas quatro expedições nos meses de maio e julho, nos anos de 2006 e 2007. As coletas foram realizadas ao longo de seis riachos de primeira ordem localizados em três áreas diferentes: campo de soja, pastagem e mata contínua. Foram encontrados 5 famílias, 19 gêneros, 36 espécies e 13 morfoespécies de Gerromorpha. As curvas médias de acumulação de espécies para cada uma das três áreas de estudo não atingiram a assíntota ao final da adição de amostras, mas demonstraram uma clara tendência a estabilização, sugerindo que um aumento do esforço amostral aproximaria o número de espécies observadas da realidade do local de estudo. Embora a cobertura vegetal tenha sido significativamente diferente entre as três áreas estudadas (ANOVA, F2,45= 23,72; P < 0,001), o tipo de hábitat não influenciou no número de espécies de Gerromorpha (ANOVA F3,44= 0,77; P = 0,52). Sete espécies apresentaram diferenças significativas entre os hábitats. Os dois eixos do MDS baseados na composição das espécies não separaram as espécies quanto ao tipo de hábitat. Para a matriz de abundância, o eixo 1 (MANOVA; F2,45 = 16,27; P < 0,001) e o eixo 2 (MANOVA; F2,45 = 6,31; P = 0,004) diferenciaram as espécies que ocorreram na área de mata contínua. Um total de 57,14% das espécies coletadas é compartilhado pelas três áreas de estudo. A sensível redução no número de indivíduos registrados da área mais conservada (mata contínua) para as áreas degradadas (plantio de soja e pastagem, respectivamente) possivelmente está relacionada à perda de cobertura vegetal observada nas áreas degradadas. As espécies Brachymetra lata, Brachymetra sp 1, Cylindrostethus palmaris, Tachygerris celocis, Rhagovelia paulana, e Rhagovelia whitei podem ser consideradas espécies indicadoras de áreas florestadas; e Neogerris lubricus pode ser indicadora de ambientes sem cobertura vegetal.

Baetidae (Insecta, Ephemeroptera) em córregos do cerrado matogrossense sob diferentes níveis de preservação ambiental

O efeito dos diferentes níveis de preservação ambiental de córregos de 1ª a 4ª ordens sobre a riqueza, abundância, similaridade na composição de Baetidae (Ephemeroptera) e o potencial das espécies como bioindicadoras foram investigados em uma região de cerrado matogrossense. Um total de vinte espécies/morfoespécies foi catalogado dentre as 1752 ninfas amostradas, sendo reportado dois novos registros de espécies para o país. Os valores do Índice de Integridade de Hábitat (HII) obtidos foram categorizados para ambientes degradados, alterados e conservados. A riqueza de espécies foi diferente entre os locais, sendo maior em ambientes alterados. A abundância foi maior entre ambientes conservados e alterados, sendo significantemente diferente dos locais degradados. A análise NMDS indicou que locais conservados e alterados apresentam similaridade de composição de espécies, diferindo dos locais degradados. Quatro espécies demonstraram relação positiva com o aumento dos valores do HII. Baetidae apresentou espécies indicadoras de ambientes com diferentes níveis de preservação, sendo Zelusia principalis Lugo-Ortiz & McCafferty, 1998 e Baetodes sp. indicadoras de ambientes conservados e Aturbina nigra Salles, Boldrini & Shimano, 2011, Callibaetis sp. 2, Camelobaetidius aff. janae Dominique & Thomas, 2000, Paracloeodes binodulus Lugo-Ortiz & McCafferty, 1996, Waltzoyphius roberti Thomas & Peru, 2002 como indicadoras de ambientes alterados. O conhecimento da ecologia das espécies avança no sentido de fornecer subsídios ao biomonitoramento da bacia e uso de espécies indicadoras.

Composição florística, estrutura e heterogeneidade ambiental da comunidade arbórea de uma várzea em Porto Ferreira, SP, Brasil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Composição florística e estrutura da comunidade vegetal em diferentes fitofisionomias do Pantanal de Poconé, Mato Grosso

The aim of this research was to analyze the composition and structure of the plant community in four phytophysiognomies at Pantanal Poconé-Mato Grosso, assuming that each sample group is a type of community, and there would be a corresponding group of species that characterize that community. We set up five plots of 50 × 50 m and subdivided each one into subplots of 10 × 10 m. In each subplot, individuals with CAP (circunference at breast height) > 10 cm were sampled. To check the structural and floristic similarity of the five vegetation types the unweighted averages grouping method was used - UPGMA, with Jaccard's coefficient and Bray-Curtis, respectively. DCA ordination of plots was used for inundation gradient analysis and TWINSPAN indicator species groups for the three strata. In the four areas 55 species belonging to 30 families were sampled. The UPMGA indicated floristic and structural differences between cambarazal, savanna types and campo de murundu and similarity between the semideciduous formations. The DCA separated the vegetation types according to the level of flooding and TWINSPAN indicated the existence of typical species for each vegetation type. In the Pantanal, some species may be restricted to certain types of vegetation, and these species can be used as indicators of the effect of flooding and possible changes in flood pulse dynamics in plant communities.

Traços quantitativos e abundância de drosofilídeos como indicadores de impacto ambiental em fragmentos de floresta estacional semidecidual

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)