GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

Transcription factors (TFs) are major players in gene regulatory networks and interactions between TFs and their target genes furnish spatiotemporal patterns of gene expression. Establishing the architecture of regulatory networks requires gathering information on TFs, their targets in the genome, and the corresponding binding sites. We have developed GRASSIUS (Grass Regulatory Information Services) as a knowledge-based Web resource that integrates information on TFs and gene promoters across the grasses. In its initial implementation, GRASSIUS consists of two separate, yet linked, databases. GrassTFDB holds information on TFs from maize (Zea mays), sorghum (Sorghum bicolor), sugarcane (Saccharum spp.), and rice (Oryza sativa). TFs are classified into families and phylogenetic relationships begin to uncover orthologous relationships among the participating species. This database also provides a centralized clearinghouse for TF synonyms in the grasses. GrassTFDB is linked to the grass TFome collection, which provides clones in recombination-based vectors corresponding to full-length open reading frames for a growing number of grass TFs. GrassPROMDB contains promoter and cis-regulatory element information for those grass species and genes for which enough data are available. The integration of GrassTFDB and GrassPROMDB will be accomplished through GrassRegNet as a first step in representing the architecture of grass regulatory networks. GRASSIUS can be accessed from www.grassius.org.

Nitrogen washing from C3 and C4 cover grasses residues by rain

Crop species with the C-4 photosynthetic pathway are more efficient in assimilating N than C-3 plants, which results in different N amounts prone to be washed from its straw by rain water. Such differences may affect N recycling in agricultural systems where these species are grown as cover crops. In this experiment, phytomass production and N leaching from the straw of grasses with different photosynthetic pathways were studied in response to N application. Pearl millet (Pennisetum glaucum) and congo grass (Brachiaria ruziziensis) with the C-4 photosynthetic pathway, and black oat (Arena Strigosa) and triticale (X Triticosecale), with the C-3 photosynthetic pathway, were grown for 47 days. After determining dry matter yields and N and C contents, a 30 mm rainfall was simulated over 8 t ha(-1) of dry matter of each plant residue and the leached amounts of ammonium and nitrate were determined. C-4 grasses responded to higher fertilizer rates, whereas N contents in plant tissue were lower. The amount of N leached from C-4 grass residues was lower, probably because the C/N ratio is higher and N is more tightly bound to organic compounds. When planning a crop rotation system it is important to take into account the difference in N release of different plant residues which may affect N nutrition of the subsequent crop.

Straw decomposition of nitrogen-fertilized grasses intercropped with irrigated maize in an integrated crop-livestock system

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Yield, chemical composition and chlorophyll relative content of Tanzania and Mombaça grasses irrigated and fertilized with nitrogen after corn intercropping

Avaliou-se o efeito da ausência e da aplicação de três doses de nitrogênio (50, 100 e 200 kg ha-1 de N) e quatro épocas de corte no inverno/primavera (julho a outubro) sobre a produtividade de massa seca (PMS), os teores relativos de clorofila (ICF _ índice de clorofila foliar) e os teores de nutrientes digestíveis totais (NDT), proteína bruta (PB), fibra em detergente neutro (FDN), fibra em detergente ácido (FDA) e lignina, bem como suas respectivas correlações nos capins tanzânia e mombaça após o consórcio com milho em um Latossolo Vermelho distroférrico. O delineamento experimental utilizado foi o de blocos casualizados, em parcelas subdivididas, com quatro repetições. As maiores PMS ocorreram com o aumento do fotoperíodo (a partir de agosto), no entanto, as respostas à adubação nitrogenada ao longo dos cortes diferiram entre e dentre os capins. em sistema de integração lavoura-pecuária irrigado sob condições de cerrado, é tecnicamente viável o estabelecimento dos capins tanzânia e mombaça em consórcio com o milho no momento da semeadura ou por ocasião da adubação nitrogenada de cobertura, visto que, mesmo na ausência de adubação nitrogenada, foi produzida quantidade satisfatória de forragem, com PMS média de 2.000 kg ha-1 por corte na época de maior escassez de volumoso para os animais (inverno/primavera). A adubação nitrogenada após a colheita do milho eleva a PMS e melhora a composição bromatológica dos capins, com aumento dos teores relativos de clorofila e PB no inverno/primavera, além de aumento dos teores de NDT e redução dos teores de FDN e FDA até o mês de setembro. O índice de clorofila foliar pode ser utilizado para estimar a PMS e o teor de PB, bem como indicar a necessidade de adubação nitrogenada dos capins tanzânia e mombaça submetidos a corte.

Preference of Atta capiguara (Hymenoptera, Formicidae) for Different Grasses

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Evaluation of ten tropical grasses in the northwest region of the state of Sao-Paulo Brazil

The experiment was carried out in the northwest region of the State of São Paulo-Brazil to evaluate ten grasses recently introduced in the region. The grasses studied were: Cynodon nlemfuensis cv. Tifton 68, C dacrylon cv. Tifton 78, Cynodon spp. cv. Tifton 85, C. dactylon cv. Florakirk, C. nlemfuensis cv. Florico, C nlemfuensis cv. Florona, C dactylon cv. Coastcross, Paspalum notation cv. Tifton and NDF (717 to 749 g.kg(-1)) were observed in the Cynodon cultivars while lower values of CP (102 and 107 g.kg(-1)) and NDF (697 and 705 g.kg(-1)) were registered in the cvs. Marandu and Tanzania 1. The contents of ADF were higher in the the cvs. Tanzania 1 and Tifton 9. The average values of IVDMD differed (Ppound0.05) among grasses and were all above 564 g.kg(-1), except for cv. Tifton-9 (499 g.kg(-1)). The results obtained in this work allowed to conclude that the cvs. Tifton 78, Tifton 85, Coastcross, Florona, and Tanzania 1 are interesting options for pastures establishment in the northwest region of the State of São Paulo-Brazil.

Differentiation in Selection of Dicots and Grasses by the Leaf-Cutter Ants Atta capiguara, Atta laevigata and Atta sexdens rubropilosa

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Phytoseiid mites on grasses in Brazil (Acari: Phytoseiidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Interference of epicuticular wax from leaves of grasses in selection and preparation of substrate for cultivation of symbiont fungus by Atta capiguara (Hym. Formicidae)

The selection of plants is one of the stages of foraging behavior, executed by leaf-cutting ants for the cultivation of symbiont fungus. Anatomical, biochemical and physiological characteristics of vegetal species are some of the factors that influence selection of substrate; however, most studies described in the literature refer to leaf-cutting ants. Due to the scarcity of studies on the role of epicuticular waxes of grasses in relation to foraging behavior of monocotyledonous leaf-cutters, we completed three experiments with the ant species Atta capiguara in which we analyzed: the attractiveness or selectivity of leaves of Saccharum officinarum (sugarcane) and/or Hypharrenia rufa (capim jaraguá), with and without epicuticular wax in relation to the worker of this ant species, their processing and elimination in the form of pellets of epicuticular wax from the referred fragments removed by the workers for cultivation of symbiont fungus. We observed that vegetal fragments without wax were those most transported by workers to the inside of the nests; that they processed the fragments equally with as much as without wax, and eliminated, in the form of pellets, wax removed from the same into garbage chambers of the colonies, leading us to conclude that for monocotyledonous leaf-cutters, epicuticular wax from vegetal leaves has great importance in vegetal integrity by being used as substrate, representing a physical barrier to the growth of symbiont fungus.

Plant nutrients in a degraded soil treated with water treatment sludge and cultivated with grasses and leguminous plants

The objective of this work was to evaluate rates for applications of water treatment sludge (WTS) as a nutrient source for grasses and leguminous plants cropped in a soil degraded by tin mining in the Amazon Region (Natural Forest of Jamari, Rondonia State, Brazil). The treatments consisted of three rates of nitrogen supplied by WTS (100, 150 and 200 mg kg -1 soil), five combinations of plants, two controls (absolute control, without fertilization; and chemical control, soil+lime+chemical fertilizers). WTS modified the contents of macro and micronutrients in the degraded soil, but it was not, as used in the present study, sufficient for the rehabilitation of the degraded area. © 2006 Elsevier Ltd. All rights reserved.

Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs

Sugarcane is the most important crop for sugar industry and raw material for bioethanol. Here we present a quantitative analysis of the gene content from publicly available sugarcane ESTs. The current sugarcane EST collection sampled orthologs for ~58 % of the closely-related sorghum proteome, suggesting that more than 10,000 sugarcane coding-genes remain undiscovered. Moreover the existence of more than 2,000 ncRNAs conserved between sugarcane and sorghum was revealed, among which over 500 are also detected in rice, supporting the existence of hundreds of conserved ncRNAs in grasses. New efforts towards sugarcane transcriptome sequencing were needed to sample the missing coding-genes as well as to expand the catalog of ncRNAs. © 2012 Springer Science+Business Media, LLC.

Evaluation of ornamental grasses submitted to water stress

The work was carried out at the College of Agricultural and Veterinary Sciences of the State University of São Paulo (UNESP/FCAV), Campus of Jaboticabal, Brazil, aiming to study the tolerance response to water stress and capacity of regeneration after mowing three different ornamental grasses used in Brazilian landscaping: Imperial zoysia grass (Zoysia japonica 'Imperial'), zoysia grass (Zoysia japonica) and St. Augustine grass (Stenotaphrum secundatum). The experimental design was entirely randomized in a factorial scheme 33 (three grass species: Zoysia japonica 'Imperial', Zoysia japonica and Stenotaphrum secundatum; in three water stress conditions: under full sun, with and without irrigation, and under greenhouse conditions without irrigation) with four replications per plot. The irrigation was performed using microsprinklers with a flow of 0.28 L s-1, and the grasses of all plots were mowed monthly. The evaluations were executed monthly, before mowing the grass, in the beginning of each season, that means, in October (for Spring evaluation), January (for Summer), April (for Autumn) and July (for Winter), considering the Brazilian climate conditions. The evaluated parameters were shoot height and total dry mass. The data were submitted to the variance analysis and the means were compared by the Tukey test at 5% confidence level. The grasses grown under greenhouse conditions, without irrigation, showed higher height and lower dry mass weight averages, what possibly indicates that the plants etiolated. The grasses grown under full sun, either with or without irrigation, showed a similar plant development. The S. secundatum species showed greater tolerance to water stress in October, month that followed the longest dry period. The total dry mass was gradually reduced during the experiment for all grasses grown under greenhouse conditions without irrigation; however, a great general tolerance to water stress was observed for all grasses because all of them survived along nine months without irrigation.

Ruminal degradability of neutral detergent fiber of Cynodon spp. grasses at four regrowth ages

The aim of this work was to determine ruminal degradation of neutral detergent fiber of grasses of the genus Cynodon, harvested at four cutting ages. It was used a randomized block design, with five treatments arranged in a split plot, the five evaluated genotypes: Tifton 85, Jiggs, Russel, Tifton 68 and Vaquero; were the plots and ages of cutting were the subplots: 28, 48, 63 and 79 days. By adding one day in the cutting age, there was a linear reduction in the effective degradability of neutral detergent fiber of blade and stem of 0.16 and 0.18%, respectively. The increase in the cutting age had a linear and positive influence on the undegradable neutral detergent fiber with daily increments for leaf and stem of 0.12 and 0.18%, respectively. At the 28 regrowth day, all genotypes showed higher content of potentially degradable insoluble fraction, effective degradability and lower undegradable fraction of the neutral detergent fiber of blade and stem in relation to other ages, in this way this interval is recommended for cutting management.

MORPHOGENESIS AND PRODUCTION OF TANZANIA, MOMBACA AND MULATO GRASSES UNDER NITROGEN FERTILIZATION

A field trial was conducted designed in a completely randomized block in a 4 x 3 factorial arrangement to evaluate the application of nitrogen doses (N) (0, 40, 80 and 160 kg/ha) on the morphogenical characteristics and dry matter partition of three forage grasses (Panicum maximum cvs. Mombasa and Tanzania and Brachiaria sp. Hybrid Mulato). The leaf appearance (LAR, leaf/day) and stretching (LER; mm/day) rates, the number of green leaves per tiller (NLT) and the average weight of tillers (MTW; g) presented s positive linear response to the N dose while the phyllochron (Phil; day/leaves) showed a negative linear response. The highest LER, IAL and final leaf length (FLL; cm) occurred in the Mombaca and Tanzania grasses, while the highest LAR occurred in the Mulato grass. There was a negative quadratic effect of the N dose on the stem elongation rate (SER; mm/day) and LF. The Mombaca and Tanzania grasses presented the highest SER; however, in just two forages. The production of total dry matter (TDM; kg/ha), leaves (LDM; kg/ha) and stems (SDM; kg/ha) increased linearly and quadratically with the N dose, respectively, for the Mombaca and Tanzania grasses. There was a high positive correlation among DM, LDM and SDM and the Mombaca grass MTW. The dry matter production and morphogenic characteristics were influenced by the nitrogen fertilization as a result of the substantial increase in the flow of tissues stimulated by fertilization, proving the importance of N for forage biomass accumulation.