Um novo protocolo in silico para a predição de complexos flexíveis entre proteínas: estudo de caso para inibidores plasmáticos de fosfolipase A2 de serpentes

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Malva sylvestris, novo hospedeiro de Puccinia heterospora no Brasil

Observou-se a ocorrência de ferrugem em Malva sylvestris, causada por Puccinia heterospora, no Município de Garanhuns (PE). Esta espécie fúngica é microcíclica e apresenta apenas o estádio sexual, com a produção de teliósporos, com morfologia variada, podendo produzir, em menor número, teliósporos bicelulares do tipo Puccinia e, predominantemente teliósporos unicelulares do tipo Uromyces (mesosporos). A produção abundante de mesosporos é uma das características morfológicas mais marcantes da espécie. Essa ferrugem possui ampla distribuição geográfica, infectando plantas pertencentes à família Malvaceae. Este representa o primeiro registro dessa ferrugem sobre o gênero Malva no Brasil. Uma amostra de referência foi depositada no Herbário Dimitri Sucre Benjamin do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro (JBRJ-RB). São apresentadas a descrição da morfologia do fungo com base na amostra coletada, ilustrações e comentários sobre a distinção entre essa espécie e outras morfologicamente semelhantes. Palavras-chave: ferrugem, Malvaceae, Pucciniales, teliósporos.

República Federativa Evangélica: uma análise de gênero sobre a laicidade no Brasil a partir da atuação dos/as parlamentares evangélicos/as no Congresso Nacional no exercício da 54ª Legislatura São Bernardo do Campo

Essa pesquisa objetiva a análise da relação entre religião e política, em perspectiva de gênero considerando a atuação de parlamentares evangélicos/as na 54ª Legislatura (de 2011 a 2014) e a forma de intervenção desses atores no espaço político brasileiro quanto à promulgação de leis e ao desenvolvimento de políticas públicas que contemplem, dentre outras, a regulamentação do aborto, a criminalização da homofobia, a união estável entre pessoas do mesmo sexo e os desafios oriundos dessa posição para o Estado Brasileiro que se posiciona como laico. Ora, se laico remete à ideia de neutralidade estatal em matéria religiosa, legislar legitimado por determinados princípios fundamentados em doutrinas religiosas, pode sugerir a supressão da liberdade e da igualdade, o não reconhecimento da diversidade e da pluralidade e a ausência de limites entre os interesses públicos / coletivos e privados / particulares. Os procedimentos metodológicos para o desenvolvimento dessa pesquisa fundamentam-se na análise e interpretação bibliográfica visando estabelecer a relação entre religião e política, a conceituação, qualificação e tipificação do fenômeno da laicidade; levantamento documental; análise dos discursos de parlamentares evangélicos/as divulgados pela mídia, proferidos no plenário e adotados para embasar projetos de leis; pesquisa qualitativa com a realização de entrevistas e observações das posturas públicas adotadas pelos/as parlamentares integrantes da Frente Parlamentar Evangélica - FPE. Porquanto, os postulados das Ciências da Religião devidamente correlacionados com a interpretação do conjunto de dados obtidos no campo de pesquisa podem identificar o lugar do religioso na sociedade de forma interativa com as interfaces da laicidade visando aprofundar a compreensão sobre a democracia, sobre o lugar da religião nas sociedades contemporâneas e sobre os direitos difusos, coletivos e individuais das pessoas.

EDUCAÇÃO, MISSÃO E GÊNERO:AS CARTAS DE MARTHA HITE WATTS (1881-1895)

O presente estudo analisou a implantação e a prática educativa do trabalho da missionária metodista norte-americana Martha Hite Watts na virada do século XIX e início do século XX, na cidade de Piracicaba, situada no estado de São Paulo. Os eixos de análise para interpretar as interfaces históricas do período baseiam-se em três aspectos: gênero, educação e missão. Martha Watts, é considerada a primeira educadora metodista no Brasil. Sua atuação se deu a partir de 1881, na cidade de Piracicaba, onde fundou o Colégio Piracicabano, que permanece em funcionamento até o presente momento. Sua experiência educacional foi relevante para o desempenho das escolas metodistas ao adotar uma pedagogia inovadora, nos moldes dos países europeus e de sua terra natal. No Brasil do final do século XIX, Martha Watts mostrou determinação ao enfrentar as diferenças de uma nova cultura e novo ambiente com hábitos, gestos e palavras estranhas para ela. O estudo procurou, a partir do diálogo com as cartas deixadas pela missionária, contribuir para a linha de pesquisa em História da Educação Brasileira. A obra da missionária Martha Watts se configura como um valioso legado para o estudo da História da Educação, História das Mulheres e Gênero.(AU)

O gênero Geastrum Pers. (Geastraceae, Basidiomycota): ocorrência, chave taxonômica e descrições de novas espécies do Nordeste brasileiro

Geastraceae is a monophyletic family included in the gomphoid-phalloid clade, it is composed only by two genus: Geastrum and Myriostoma. These genus are closely related in their morphology and phylogeny, both showing angiocarpic basidiomata, apical stoma, basidiospores passively released by the bellows mechanism and exoperidium dehiscent in rays, these genus are distinct by the number of stomas and pedicels. Because of dehiscense of exoperidium they are popularly known as “earthstars”. Usually they occur on decomposing leaf-litter and decaying wood. They are, thus, saprophytic, with rare exceptions of ectomycorrhizal species. Geastrum is the most diverse gasteroid genus in Brazil, with an estimated 51 records. However, there are large gaps in the geographic distribution and systematics studies about the Geastrum in this country, especially because of the characteristics found in the Brazilian territory (megadiverse, hotspots and continental size), which makes it a priority area for species inventory. Thus, this work was aimed at realizing inventory of species of Geastrum, which occur in Caatinga and Northeastern Atlantic Rainforest. At least two field expeditions were realized, during about four days on rainy season of 2013 and 2014 in the areas: Reserva Biológica de Guaribas, located in Atlantic Rainforest domain, Paraíba State and Reserva Ecológica Estadual Mata do Pau Ferro, located on “Brejos Paraibanos”, Paraíba State. Furthermore, specimens deposited in the Herbarium of the Universidade Federal do Rio Grande do Norte, which were collected in Parque Nacional Vale do Catimbau, Caatinga of Pernambuco State, were analyzed. The specimens were identified according to analysis of macro and micro morphology based on specific literature. Approximately 400 basidiomata, distributed in 73 exsiccates were analyzed. 21 species were identified, 19 are in specie level, which two are proposed to new species. (Geastrum magnosporum sp. nov. e G. pusillupilosum sp. nov.) and two in genera level (sp. e aff.). We emphasize one new record for Brazil, 12 new records for Paraíba State, four new records for semiarid region in Brazil and six new records to Atlantic Rainforest relicts “Brejo de Altitude”. So, the results improved the knowledge about Geastrum in Paraíba State by 200%, 24 % in Brazilian semiarid region and 55% in Atlantic Rainforest relicts “Brejo de Altitude”, evincing that Northeastern Brazil has high species richness.

Los futuros docentes y su actitud hacia la inclusión de personas con discapacidad: una perspectiva de género

La inclusión de las personas con discapacidad es una de las prioridades de las sociedades avanzadas, y para conseguirla, la educación constituye un instrumento de primera magnitud. En este trabajo se estudia el apoyo a la inclusión de estudiantes con discapacidad en el entorno universitario. El modelo teórico de referencia es el propuesto por la Teoría del Comportamiento Planeado, que se ha aplicado utilizando los datos obtenidos a través de una encuesta realizada a 621 estudiantes de las titulaciones de Ciencias de la Educación en la Universidad de A Coruña, durante el curso 2010-2011. Los resultados muestran la importancia del género como factor diferenciador, revelando una mayor implicación de las mujeres que de los hombres para favorecer la inclusión de los compañeros universitarios con discapacidad. La relevancia de estos resultados aumenta si se considera la repercusión social que tiene esta mayor implicación del colectivo mayoritario en el ámbito de la educación en su fase más temprana, momento en el que se produce la formación de actitudes.

Contributos para a promoção da igualdade de género no contexto da aula de Técnica de Dança Contemporânea com os alunos do 6º ano da Escola de Dança do Conservatório Nacional

Relatório Final de Estágio apresentado à Escola Superior de Dança, com vista à obtenção do grau de Mestre em Ensino de Dança.

A interseccionalidade de gênero, raça e classe no Programa Ciência sem Fronteiras : um estudo sobre estudantes brasileiros com destino aos EUA

Dissertação (mestrado)—Universidade de Brasília, Faculdade de Educação, Departamento de Pós-Graduação, Mestrado Profissional em Educação, 2015.

Androgen levels increase by intratumoral de novo steroidogenesis during progression of castration-resistant prostate cancer

Although systemic androgen deprivation prolongs life in advanced prostate cancer, remissions are temporary because patients almost uniformly progress to a state of a castration-resistant prostate cancer (CRPC) as indicated by recurring PSA. This complex process of progression does not seem to be stochastic as the timing and phenotype are highly predictable, including the observation that most androgen-regulated genes are reactivated despite castrate levels of serum androgens. Recent evidence indicates that intraprostatic levels of androgens remain moderately high following systemic androgen deprivation therapy, whereas the androgen receptor (AR) remains functional, and silencing the AR expression following castration suppresses tumor growth and blocks the expression of genes known to be regulated by androgens. From these observations, we hypothesized that CRPC progression is not independent of androgen-driven activity and that androgens may be synthesized de novo in CRPC tumors leading to AR activation. Using the LNCaP xenograft model, we showed that tumor androgens increase during CRPC progression in correlation to PSA up-regulation. We show here that all enzymes necessary for androgen synthesis are expressed in prostate cancer tumors and some seem to be up-regulated during CRPC progression. Using an ex vivo radiotracing assays coupled to high-performance liquid chromatography-radiometric/mass spectrometry detection, we show that tumor explants isolated from CRPC progression are capable of de novo conversion of [(14)C]acetic acid to dihydrotestosterone and uptake of [(3)H]progesterone allows detection of the production of six other steroids upstream of dihydrotestosterone. This evidence suggests that de novo androgen synthesis may be a driving mechanism leading to CRPC progression following castration.

Insulin increases De Novo Steroidogenesis in prostate cancer cells

Androgen-dependent pathways regulate maintenance and growth of normal and malignant prostate tissues. Androgen deprivation therapy (ADT) exploits this dependence and is used to treat metastatic prostate cancer; however, regression initially seen with ADT gives way to development of incurable castration-resistant prostate cancer (CRPC). Although ADT generates a therapeutic response, it is also associated with a pattern of metabolic alterations consistent with metabolic syndrome including elevated circulating insulin. Because CRPC cells are capable of synthesizing androgens de novo, we hypothesized that insulin may also influence steroidogenesis in CRPC. In this study, we examined this hypothesis by evaluating the effect of insulin on steroid synthesis in prostate cancer cell lines. Treatment with 10 nmol/L insulin increased mRNA and protein expression of steroidogenesis enzymes and upregulated the insulin receptor substrate insulin receptor substrate 2 (IRS-2). Similarly, insulin treatment upregulated intracellular testosterone levels and secreted androgens, with the concentrations of steroids observed similar to the levels reported in prostate cancer patients. With similar potency to dihydrotestosterone, insulin treatment resulted in increased mRNA expression of prostate-specific antigen. CRPC progression also correlated with increased expression of IRS-2 and insulin receptor in vivo. Taken together, our findings support the hypothesis that the elevated insulin levels associated with therapeutic castration may exacerbate progression of prostate cancer to incurable CRPC in part by enhancing steroidogenesis.

IGF2 increases de novo steroidogenesis in prostate cancer cells

Androgen-dependent pathways regulate maintenance and growth of normal and malignant prostate tissues. Androgen deprivation therapy (ADT) exploits this dependence and is used to treat metastatic prostate cancer; however, regression initially seen with ADT gives way to development of incurable castration-resistant prostate cancer (CRPC). Although ADT generates a therapeutic response, it is also associated with a pattern of metabolic alterations consistent with metabolic syndrome including elevated circulating insulin. Because CRPC cells are capable of synthesizing androgens de novo, we hypothesized that insulin may also influence steroidogenesis in CRPC. In this study, we examined this hypothesis by evaluating the effect of insulin on steroid synthesis in prostate cancer cell lines. Treatment with 10 nmol/L insulin increased mRNA and protein expression of steroidogenesis enzymes and upregulated the insulin receptor substrate insulin receptor substrate 2 (IRS-2). Similarly, insulin treatment upregulated intracellular testosterone levels and secreted androgens, with the concentrations of steroids observed similar to the levels reported in prostate cancer patients. With similar potency to dihydrotestosterone, insulin treatment resulted in increased mRNA expression of prostate-specific antigen. CRPC progression also correlated with increased expression of IRS-2 and insulin receptor in vivo. Taken together, our findings support the hypothesis that the elevated insulin levels associated with therapeutic castration may exacerbate progression of prostate cancer to incurable CRPC in part by enhancing steroidogenesis.

De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

Background: Nicotiana benthamiana has been widely used for transient gene expression assays and as a model plant in the study of plant-microbe interactions, lipid engineering and RNA silencing pathways. Assembling the sequence of its transcriptome provides information that, in conjunction with the genome sequence, will facilitate gaining insight into the plant's capacity for high-level transient transgene expression, generation of mobile gene silencing signals, and hyper-susceptibility to viral infection. Methodology/Results: RNA-seq libraries from 9 different tissues were deep sequenced and assembled, de novo, into a representation of the transcriptome. The assembly, of16GB of sequence, yielded 237,340 contigs, clustering into 119,014 transcripts (unigenes). Between 80 and 85% of reads from all tissues could be mapped back to the full transcriptome. Approximately 63% of the unigenes exhibited a match to the Solgenomics tomato predicted proteins database. Approximately 94% of the Solgenomics N. benthamiana unigene set (16,024 sequences) matched our unigene set (119,014 sequences). Using homology searches we identified 31 homologues that are involved in RNAi-associated pathways in Arabidopsis thaliana, and show that they possess the domains characteristic of these proteins. Of these genes, the RNA dependent RNA polymerase gene, Rdr1, is transcribed but has a 72 nt insertion in exon1 that would cause premature termination of translation. Dicer-like 3 (DCL3) appears to lack both the DEAD helicase motif and second dsRNA binding motif, and DCL2 and AGO4b have unexpectedly high levels of transcription. Conclusions: The assembled and annotated representation of the transcriptome and list of RNAi-associated sequences are accessible at www.benthgenome.com alongside a draft genome assembly. These genomic resources will be very useful for further study of the developmental, metabolic and defense pathways of N. benthamiana and in understanding the mechanisms behind the features which have made it such a well-used model plant. © 2013 Nakasugi et al.

A transcriptomic analysis of striped catfish (Pangasianodon hypophthalmus) in response to salinity adaptation: De novo assembly, gene annotation and marker discovery

The striped catfish (Pangasianodon hypophthalmus) culture industry in the Mekong Delta in Vietnam has developed rapidly over the past decade. The culture industry now however, faces some significant challenges, especially related to climate change impacts notably from predicted extensive saltwater intrusion into many low topographical coastal provinces across the Mekong Delta. This problem highlights a need for development of culture stocks that can tolerate more saline culture environments as a response to expansion of saline water-intruded land. While a traditional artificial selection program can potentially address this need, understanding the genomic basis of salinity tolerance can assist development of more productive culture lines. The current study applied a transcriptomic approach using Ion PGM technology to generate expressed sequence tag (EST) resources from the intestine and swim bladder from striped catfish reared at a salinity level of 9 ppt which showed best growth performance. Total sequence data generated was 467.8 Mbp, consisting of 4,116,424 reads with an average length of 112 bp. De novo assembly was employed that generated 51,188 contigs, and allowed identification of 16,116 putative genes based on the GenBank non-redundant database. GO annotation, KEGG pathway mapping, and functional annotation of the EST sequences recovered with a wide diversity of biological functions and processes. In addition, more than 11,600 simple sequence repeats were also detected. This is the first comprehensive analysis of a striped catfish transcriptome, and provides a valuable genomic resource for future selective breeding programs and functional or evolutionary studies of genes that influence salinity tolerance in this important culture species.

Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of De novo assemblers

Background The sequencing, de novo assembly and annotation of transcriptome datasets generated with next generation sequencing (NGS) has enabled biologists to answer genomic questions in non-model species with unprecedented ease. Reliable and accurate de novo assembly and annotation of transcriptomes, however, is a critically important step for transcriptome assemblies generated from short read sequences. Typical benchmarks for assembly and annotation reliability have been performed with model species. To address the reliability and accuracy of de novo transcriptome assembly in non-model species, we generated an RNAseq dataset for an intertidal gastropod mollusc species, Nerita melanotragus, and compared the assembly produced by four different de novo transcriptome assemblers; Velvet, Oases, Geneious and Trinity, for a number of quality metrics and redundancy. Results Transcriptome sequencing on the Ion Torrent PGM™ produced 1,883,624 raw reads with a mean length of 133 base pairs (bp). Both the Trinity and Oases de novo assemblers produced the best assemblies based on all quality metrics including fewer contigs, increased N50 and average contig length and contigs of greater length. Overall the BLAST and annotation success of our assemblies was not high with only 15-19% of contigs assigned a putative function. Conclusions We believe that any improvement in annotation success of gastropod species will require more gastropod genome sequences, but in particular an increase in mollusc protein sequences in public databases. Overall, this paper demonstrates that reliable and accurate de novo transcriptome assemblies can be generated from short read sequencers with the right assembly algorithms. Keywords: Nerita melanotragus; De novo assembly; Transcriptome; Heat shock protein; Ion torrent