Animated feather coats using field lines

The tedious task of manually placing feathers on computer animated objects involves aligning feathers, ensuring that they do not insect each other or penetrate the surface, deforming every feather to match the local surface features, and ensuring that the feather coat is consistent when the underlying object is animated.

We present a technique for generating a feather coat over an object. Feather orientation is specified quickly and easily, feathers are deformed while ensuring collision prevention, and the coat can be animated. We create a vector field in the space surrounding the body object and deform feathers to align with the field lines. The non-intersection property of the field lines ensures that feather intersections are avoided. We provide a formulation of a suitable vector field and demonstrate that it is capable of producing realistic feather coats. The process can easily be integrated into the work-flow of standard modelling and animation processes.

We show examples of feather coat creation on a range of objects, proving that field line based placement of feather coats provides the desired functionality for feather modelling and animation.

Phylogenetic analysis of beak and feather disease virus across a host ring-species complex

Pathogens have been hypothesized to play a major role in host diversity and speciation. Susceptibility of hybrid hosts to pathogens is thought to be a common phenomenon that could promote host population divergence and subsequently speciation. However, few studies have tested for pathogen infection across animal hybrid zones while testing for codivergence of the pathogens in the hybridizing host complex. Over 8 y, we studied natural infection by a rapidly evolving single-strand DNA virus, beak and feather diseases virus (BFDV), which infects parrots, exploiting a host-ring species complex (Platycercus elegans) in Australia. We found that host subspecies and their hybrids varied strikingly in both BFDV prevalence and load: both hybrid and phenotypically intermediate subspecies had lower prevalence and load compared with parental subspecies, while controlling for host age, sex, longitude and latitude, as well as temporal effects. We sequenced viral isolates throughout the range, which revealed patterns of genomic variation analogous to Mayr's ring-species hypothesis, to our knowledge for the first time in any host-pathogen system. Viral phylogeny, geographic location, intraspecific host density, and parrot community diversity and composition did not explain the differences in BFDV prevalence or load between subpopulations. Overall, our analyses suggest that functional host responses to infection, or force of infection, differ between subspecies and hybrids. Our findings highlight the role of host hybridization and clines in altering host-pathogen interactions, dynamics that can have important implications for models of speciation with gene flow, and offer insights into how pathogens may adapt to diverging host populations.

Sex-specific dive characteristics in a sexually size dimorphic duck

Dive duration generally increases with body size in animals including wildfowl. Therefore, diving behaviour may vary between the sexes in sexually size dimorphic species, such as the extremely sexually size dimorphic Musk Duck Biziura lobata. However, a previous study reports longer dives in the smaller sex (females) when breeding. In this study, non-breeding male Musk Ducks dived for significantly longer periods than females and tended to have longer inter-dive intervals, conforming to the general patterns described for other species. The differences in dive behaviour we describe may be explained by niche partitioning or differential oxygen requirements or uptake rates by the sexes.

Prevalence of beak and feather disease virus in wild Platycercus elegans: comparison of three tissue types using a probe-based real-time qPCR test

The detection of avian viruses in wild populations has considerable conservation implications. For DNA-based studies, feathers may be a convenient sample type for virus screening and are, therefore, an increasingly common technique. This is despite recent concerns about DNA quality, ethics, and a paucity of data comparing the reliability and sensitivity of feather sampling to other common sample types such as blood. Alternatively, skeletal muscle tissue may offer a convenient sample to collect from dead birds, which may reveal viraemia. Here, we describe a probe-based quantitative real-time PCR for the relative quantification of beak and feather disease virus (BFDV), a pathogen of serious conservation concern for parrots globally. We used this method to test for BFDV in wild crimson rosellas (Platycercus elegans), and compared three different sample types. We detected BFDV in samples from 29 out of 84 individuals (34.5%). However, feather samples provided discordant results concerning virus presence when compared with muscle tissue and blood, and estimates of viral load varied somewhat between different sample types. This study provides evidence for widespread infection of BFDV in wild crimson rosellas, but highlights the importance of sample type when generating and interpreting qualitative and quantitative avian virus data.

The ecology and evolution of beak and feather disease virus in Platycercus elegans

 This thesis explores the complex ecological and evolutionary interactions between beak and feather disease virus and one of its hosts the crimson rosella. The work identifies several factors that predict viral infection in wild birds and determines how host population structure influences viral evolution.

An experimental examination of interindividual variation in feather corticosterone content in the House Sparrow, Passer domesticus in southeast Australia

Non-invasive techniques for measuring glucocorticoids (GCs) have become more prevalent, due to the advantage of eliminating the effects of animal disturbance on GC levels and their potential to provide an integrated, historic estimate of circulating GC levels. In the case of birds, corticosterone (CORT) is deposited in feathers, and may reflect a bird's GC status over the period of feather synthesis. This technique thus permits a retrospective view of the average circulating GC levels during the moult period. While it is generally assumed that differences in feather CORT content (CORTf) between individuals reflects their different stress histories during either natural or induced moult, it is not clear how much of this variation is due to extrinsic versus intrinsic factors. We examined this question by determining CORTf in free-living house sparrows (Passer domesticus) from two populations, one urban and the other rural, that were plucked before and after exposure to different plasma CORT levels while held captive. We experimentally manipulated plasma CORT by implanting birds with either a corticosterone-filled, metyrapone-filled, or empty ('sham') silastic capsule as replacement feathers first emerged. The pattern of post-treatment CORTf was consistent with our expectations, based on plasma CORT levels of an experimentally implanted reference group. However, there was no statistically significant difference in CORTf between these treatment groups unless sex, population origin, and CORTf of original feathers for each individual were included in a model. Thus, birds with higher CORTf in feathers removed for this experiment tended to have higher CORTf in post-treatment replacement feathers, irrespective of treatment. In addition, we found that feather fault bar scores were significantly higher in CORT-treated birds than in the other two treatment groups, but did not vary directly with CORTf level. Our study therefore broadly confirms the use of feathers as a non-invasive tool to estimate plasma CORT during moult in birds, but importantly demonstrates the potential for intrinsic differences in stress characteristics between populations and individuals to obscure the effects extrinsic stressors might have on CORTf .

Structural features of the epididymal region of the domestic duck (Anas plathyrynchos)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Two new feather mite species (Acari, Pteronyssidae) from the white-barred piculet, Picumnus cirratus (Ayes, Piciformes)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A NEW SPECIES of THE FEATHER MITE GENUS COTINGODECTES and A NEW GENUS of PTERODECTINAE (ASTIGMATA: PROCTOPHYLLODIDAE)

In this paper a second species of the feather mite genus Cotingodectes Valim and Hernandes, C. breviphallus n. sp., is described from Rupicola rupicola (Passeriformes, Cotingidae) in Brazil. A new genus, Berladectes, is erected to accommodate Dolichodectes neotropicus Hernandes and Valim.

Feather mites of Brazil (Acari: Astigmata: Analgoidea and Pterolichoidea)

We present a checklist of feather mites known from native birds in Brazil. The list was compiled from a survey of Brazilian records published in indexing databases (e.g. Zoological Records) and from the available literature. To date, 185 nominal species representing 21 families have been recorded from Brazilian birds. Associations with 15 bird orders were found: Anseriformes, Apodiformes, Caprimulgiformes, Ciconiiformes, Columbiformes, Cuculiformes, Falconiformes, Galliformes, Gruiformes, Opisthocomiformes, Passeriformes, Piciformes, Psittaciformes, Tinamiformes and Trogoniformes. These birds sum to 218 species, which represent only 12.4% of all bird species occurring in Brazil. The feather mite fauna of several species-rich and important bird orders in Brazil remain unexplored, including Cathartiformes, Charadriiformes, Coraciiformes, Galbuliformes and Strigiformes. We estimate that between 900 and 5300 feather mite species are expected to occur on Brazilian birds, which is at least five times greater than current records. The training of researchers with expertise in the taxonomy of this group of mites should be stimulated so that there is a compatible number of taxonomists to discover and describe the almost unexplored feather mite fauna in Brazil.

Two new genera and five new species of the feather mite subfamily Proctophyllodinae (Astigmata : Proctophyllodidae) from suboscine birds in Brazil

Two new genera and five new species of feather mites of the family Proctophyllodidae are described from passerine birds from Brazil: Tyranniphyllodes pitangi gen. n., sp. n. from Pitangus sulphuratus (Tyrannidae); Atrichophyllodes delalandi gen. n., sp. n. from Corythopis delalandi (Tyrannidae); A. mentalis gen. n., sp. n. from Dysithamnus mentalis (Thamnophilidae); Anisophyllodes candango sp. n. from Elaenia chiriquensis (Tyrannidae); and Platyacarus sittasomi sp. n. from Sittasomus griseicapillus (Dendrocolaptidae). The discovery of these taxa might give data for a better understanding of the evolution of the family Proctophyllodidae in general and the dispersion of these mites on passerines in South America in paricular.

AN INEXPENSIVE METHOD FOR CHROMOSOME PREPARATIONS FROM FEATHER PULP IN BIRDS, USING SHORT-TERM TREATMENT WITH COLCHICINE IN-VITRO, DEMONSTRATED ON AMAZONA-AMAZONICA (PSITTACIDAE)

In order to develop an efficient and low-cost technique for obtaining bird chromosome preparations, and to adapt the cytogenetic process of bird sexing for general use at zoos and breeding farms with the technical support of cytogenetics laboratories, we tested variants of the technique described by Giannoni et al. (Genet. Sel. Evol. 23: 123-125, 1991), based on the utilization of cellular material from growing feather pulp cultured in complete medium for six hours. Hanks' saline solution gave satisfactory performance as a substitute for complete medium, with no need to use PHA, serum of collagenase, when utilized in material obtained from feather pulp of Amazona amazonica (Psittacidae).