Doenças bacterianas em bagres sul americanos: isolamento, caracterização e patogenia

Pós-graduação em Aquicultura - FCAV

Impacto da mastite subclínica na reprodução de vacas leiteiras

Pós-graduação em Zootecnia - FMVZ

Etiologia e perfil de sensibilidade de bactérias isoladas de ovelhas com mastite na região Nordeste do estado do Pará

Objetivou-se com este trabalho estudar a etiologia da mastite em ovelhas na região nordeste do Pará, além de estabelecer o perfil de sensibilidade das bactérias isoladas frente a antimicrobianos. Foram examinadas 176 ovelhas da raça Santa Inês, em lactação, mantidas em sistema semi-intensivo, pertencentes a sete propriedades especializadas na criação de ovinos. Foi realizado o exame clínico da glândula mamária, o exame macroscópico da secreção láctea por meio do Teste da Caneca Telada, o California Mastitis Test (CMT), o exame microbiológico do leite e o antibiograma. Das 352 metades mamárias estudadas (176 ovelhas), 21 (5,97%) apresentaram mastite clínica, 26 (7,39%) apresentaram mastite subclínica e 305 (86,64%) metades mamárias foram negativas. A maioria dos animais acometidos pela mastite estava no terço médio da lactação, com menor número de crias e maior número de lactações. Na mastite clínica (MC) as bactérias isoladas foram Staphylococcus spp. coagulase negativo (42,9%); Staphylococcus aureus (9,52%); Streptococcus spp. (4,76%) e Escherichia coli (4,76%). As associações observadas foram Staphylococcus aureus e Streptococcus spp. (4,76%); Staphylococcus spp. coagulase negativo não hemolítica, Staphylococcus spp. coagulase negativo hemolítica e Staphylococcus spp. coagulase negativo pigmento não hemolítica (4,76%). Já na mastite subclínica (MSC), as bactérias isoladas foram Staphylococcus spp. coagulase negativo (26,9%); Staphylococcus aureus (15,4%); Streptococcus spp. (7,69%); Escherichia coli (7,69%) e Citrobacter freundii (11,5%). A associação observada foi Staphylococcus spp. coagulase negativo não hemolítica e Staphylococcus spp. coagulase negativo hemolítica (3,85%). Os antimicrobianos com maior eficácia contra os agentes isolados Gram positivos foram penicilina/novobiocina (100%), cefalotina (100%) e florfenicol (100%) e contra o Citrobacter freundii foram a ampicilina (100%) e florfenicol (100%). Já em relação a Escherichia coli, 66,7% dos isolados mostraram-se resistentes à ampicilina, cefalotina, florfenicol e tetraciclina. A mastite está presente em ovelhas no estado do Pará, havendo a necessidade de estimar, em estudos futuros, as perdas econômicas causadas por essa enfermidade. O CMT apresentou resultados satisfatórios, podendo ser recomendado como teste de triagem para o diagnóstico de casos individuais de mastite subclínica em ovinos, uma vez que apresentou boa relação com o exame microbiológico. No antibiograma foi observado que a maioria dos agentes isolados apresenta-se sensível aos diferentes antimicrobianos testados, sendo os antibióticos com melhor eficiência o florfenicol e a cefoxitina.

Mastite bovina em rebanhos leiteiros no município de Parauapebas, mesorregião sudeste do estado do Pará

A mastite em sua forma subclinica é a responsável pelas maiores perdas de produção leiteira representando elevados prejuízos econômicos. Com o objetivo de estudar a etiologia da mastite subclinica bovina no município de Parauapebas-Pa, foram submetidas ao California Mastitis test. - CMT 174 (8,4%) vacas em sua maioria mestiças, aparentemente saudáveis de 15 propriedades leiteiras localizadas no referido município, situado na Mesorregião Sudeste do estado do Pará. Observou-se que 84 (48,33%) animais apresentaram resultados de +,++,+++ ao CMT. O leite de cada teto que reagiram ao CMT num total de 178 amostras foi analisado bacteriologicamente visando o isolamento e a identificação dos microorganismos, foram analisadas as características macroscópicas, microscópicas e bioquímicas das culturas isoladas. Do total de amostras foram isoladas 208 cepas de agentes microbianos em culturas puras ou em associações sendo todos provenientes de leite mamitico, das quais 141(67,79%) cepas eram cocos Gram positivos- S.aureus (29%) e S.epidermidis (19,14%) e 67 (32,21%) eram enterobactérias. Entre as enterobacterias destacaram-se Pseudomonas sp.com 12 (17,91%) cepas esisoladas, Citrobacter sp. com 12( 17,95%) cepas e Shigella sp. com 10(14,92%), Outras 15 cepas de enterobacterias que não foram identificadas. O isolamento dos agentes apresentou variação significativa, pois se consideraram as observações quanto ao manejo de ordenha dos animais estudados, as condições higiênicas sanitárias da obtenção do leite através da aplicação de um questionário visando a observação das seguintes variáveis: sistema de criação, manejo adotado na propriedade, higiene e nível de exposição, infecciosidade dos agentes isolados o que reafirma a complexidade da infecção na área de estudo e seu aspecto multifatorial, necessitando o investimento por parte dos órgãos fiscalizadores de melhores praticas de higiene e obtenção na atividade de exploração de leite.

Determinação qualitativa de enterobactérias presentes em tartarugas da Amazônia (podocnemis expansa) de vida livre e cativeiro

A tartaruga da amazônia (Podocnemis expansa) corresponde a um recurso faunístico muito importante para as populações ribeirinhas da região amazônica, além de ser uma das principais espécies indicadas para produção em cativeiro. O consumo dessa espécie como alimento na região, gerou uma demanda de estudos quanto à questão sanitária e seu impacto na saúde pública. O principal objetivo deste trabalho foi avaliar a microbiota intestinal de tartarugas da amazônia de vida livre e cativeiro, verificando a ocorrência de bactérias da Família Enterobacteriaceae no trato intestinal desses animais. Para isso, foram utilizadas 116 tartarugas adultas, de ambos os sexos, sendo que, 51 foram capturadas na Ilha de São Miguel, município de Santarém (PA), 50 animais pertenciam a um cativeiro comercial e 15 eram provenientes de um criadouro conservacionista, localizados na região metropolitana de Belém, Pará. De cada animal, foi colhida amostra de material biológico cloacal, utilizando-se swabs estéreis para em seguida serem acondicionados em tubos com meios de transporte e enviados ao laboratório para análises bacteriológicas. Todas as amostras foram imersas em caldos Selenito e BHI durante 24 horas e posteriormente semeadas em Agar Shigella-Salmonella e Agar Mac Conkey na temperatura de 37ºC por 24 horas. As UFCs (Unidades formadoras de colônia) foram semeadas em Agar Muller Hilton por mais 24 horas em estufa a 37ºC e identificadas pelo sistema Vitek® totalmente automatizado. Do total de 116 amostras foram obtidos 245 crescimentos bacterianos nos quais 83 (33,87%) eram provenientes dos animais de vida livre, com a identificação de 20 espécies bacterianas. Nos animais mantidos em cativeiro, foram obtidos 162 (65,72%) isolamentos, identificando-se 10 espécies de bactérias. Oito espécies foram encontradas em ambos os ambientes e 14 espécies em apenas um deles. A espécie Klebsiella pneumoniae foi a mais frequente, com 52 isolamentos, totalizando 21,22% dos crescimentos bacterianos, seguida de Enterobacter cloacae (35/14,29%), Serratia marcescens (29/11,84%) e Salmonella species (24/9,80%). Nos quelônios de vida livre, os microrganismos mais isolados constituiram-se dos genêros Enterobacter, Klebsiella, Citrobacter e Aeromonas. Klebsiella pneumoniae, Serratia marcescens, Enterobacter cloacae e Salmonella spp. apresentaram frequências elevadas naqueles animais cativos. Este resultado evidencia uma maior diversidade de microrganismos entre os animais de vida livre e uma contaminação elevada por amostra nos animais de cativeiro. As espécies Salmonella sp., E. coli e Acinetobacter ssp., tiveram sua frequência aumentada provavelmente devido a influência do cativeiro, sendo portanto, sugeridas como indicativas da qualidade sanitária de populações da tartaruga da Amazônia.

Enterobacteria Isolation in Ostrich Eggs (Struthio camelus)

This study was conducted to determine the presence of enterobacteria in the eggs of ostriches reared on a farm with a history of reproductive failure. Ninety samples from twenty eggs were submitted to bacteriological tests. The results showed Enterobacteria growth in 100% of the eggs. The microorganisms isolated were Hafnia alvei in 50% (10/20), Serratia spp. in 20% (4/20), Escherichia coli in 15% (3/20), and Citrobacter freundii in 15% (3/20). All eggs presented poor eggshell quality, which favored enterobacteria contamination. Hafnia alvei was present only in the internal egg structures (albumen and yolk sac), suggesting the possibility of vertical infection.

Enterobacteria isolation in ostrich eggs (Struthio Camelus)

This study was conducted to determine the presence of enterobacteria in the eggs of ostriches reared on a farm with a history of reproductive failure. Ninety samples from twenty eggs were submitted to bacteriological tests. The results showed Enterobacteria growth in 100% of the eggs. The microorganisms isolated were Hafnia alvei in 50% (10/20), Serratia spp. in 20% (4/20), Escherichia coli in 15% (3/20), and Citrobacter freundii in 15% (3/20). All eggs presented poor eggshell quality, which favored enterobacteria contamination. Hafnia alvei was present only in the internal egg structures (albumen and yolk sac), suggesting the possibility of vertical infection.

Mutations in the quinolone resistance-determining regions of gyrA and parC in Enterobacteriaceae isolates from Brazil

Mutations in the quinolone resistance-determining regions (QRDR) in chromosomal gyrA and parC genes and fluoroquinolone susceptibility profiles were investigated in quinolone-resistant Enterobacteriaceae isolated from community and hospitalized patientsin the Brazilian Southeast region. A total of 112 nalidixic acid-resistant enterobacterial isolates collected from 2000 to 2005 were investigated for mutations in the topoisomerases genes gyrA and parC by amplifying and sequencing the QRDR regions. Susceptibility to fluoroquinolones was tested by the agar dilution method. Amongst the 112 enterobacterial isolates, 81 (72.3%) were resistant to ciprofloxacin and 5 (4.5%) showed reduced susceptibility. Twenty-six (23.2%) were susceptible to ciprofloxacin. Several alterations were detected in gyrA and parC genes. Escherichia coli isolates (47.7%) showed double mutations in the gyrA gene and a single one in the parC gene. Two unusual aminoacid substitutions are reported, an Asp87-Asn in a Citrobacter freundii isolate with reduced susceptibility to fluoroquinolones and a Glu84-Ala in one E. coli isolate.Only a parC gene mutation was found in fluoroquinolone-susceptible Enterobacter aerogenes. None of the isolates susceptible to ciprofloxacin presented mutations in topoisomerase genes. This comprehensive analysis of QRDRs in gyrA and parC genes, covering commonly isolated Enterobacteriaceae in Brazil is the largest reported up to now.

Fecal carriage of extended-spectrum beta-lactamase-producing Enterobacteriaceae in swine and cattle at slaughter in Switzerland

During the past decade, extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae have become a matter of great concern in human medicine. ESBL-producing strains are found in the community, not just in hospital-associated patients, which raises a question about possible reservoirs. Recent studies describe the occurrence of ESBL-producing Enterobacteriaceae in meat, fish, and raw milk; therefore, the impact of food animals as reservoirs for and disseminators of such strains into the food production chain must be assessed. In this pilot study, fecal samples of 59 pigs and 64 cattle were investigated to determine the occurrence of ESBL-producing Enterobacteriaceae in farm animals at slaughter in Switzerland. Presumptive-positive colonies on Brilliance ESBL agar were subjected to identification and antibiotic susceptibility testing including the disc diffusion method and E-test ESBL strips. As many as 15.2% of the porcine and 17.1% of the bovine samples, predominantly from calves, yielded ESBL producers. Of the 21 isolated strains, 20 were Escherichia coli, and one was Citrobacter youngae. PCR analysis revealed that 18 strains including C. youngae produced CTX-M group 1 ESBLs, and three strains carried genes encoding for CTX-M group 9 enzymes. In addition, eight isolates were PCR positive for TEM beta-lactamase, but no bla(SHV) genes were detected. Pulsed-field gel electrophoresis showed a high genetic diversity within the strains. The relatively high rates of occurrence of ESBLproducing strains in food animals and the high genetic diversity among these strains indicate that there is an established reservoir of these organisms in farm animals. Further studies are necessary to assess future trends.

Microbiota-mediated fine-tuning of the threshold of intestinal inflammasome activation in host-microbial mutualism

The inflammasome is a complex of proteins that controls the activity of caspase-1, pro-IL-1b and pro-IL-18. It acts in inflammatory processes and in pyropoptosis. The lower intestine is densely populated by a community of commensal bacteria that, under healthy conditions, are beneficial to the host. Some evidence suggests that the gut microbiota influences regulation of the inflammasome. Components of inflammasomes have been shown to have a protective function against development of experimental colitis, dependent on IL-18 production. However the precise mechanisms and the role of the inflammasome in maintaining a healthy host-microbial mutualism remains unknown. To address this question, we have performed axenic (GF) and gnotobiotic in vivo experiments to investigate how the inflammasome components mainly at the level of intestinal epithelial cells (IECs) are regulated under different hygiene conditions. We have established that gene expression of the inflammasome components NLRC4, NLRP3, NLRP6, NLRP12, caspase-1, ASC and IL-18 do not differ between germ-free and colonised conditions under steady-state. In contrast, induction in IL-18 was observed following infection with the pathobiont Segmented Filamentous Bacteria or the pathogen C. rodentium. Additional preliminar findings suggest that a more diverse intestinal flora, like specific pathogen-free (SPF) flora, is more efficient in inducing basal activation of the inflammasome and especially production of IL-18 by IECs, shortly after colonisation. We are also in the process of testing if basal activation of the inflammasome upon intestinal colonization with commensal bacteria helps to protect the host from potential pathobiont bacteria, like C. rodentium, SFB, Prevotella and TM7.

Microbiota and Microsatellite genotypes of Pacific oysters stemming from three oyster bed in the Northern Wadden Sea

Background: Studies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host. Results: While the gill associated microbial communities in oysters were dominated by few abundant taxa (i.e. Sphingomonas, Mycoplasma) the distribution of rare bacterial groups correlated to relatedness between the hosts under ambient conditions. Exposing the host to disturbance broke apart this relationship by removing rare phylotypes thereby reducing overall microbial diversity. Shifts in the microbiome composition in response to stress did not result in a net increase in genera known to contain potentially pathogenic strains. Conclusion: The decrease in microbial diversity and the disassociation between population genetic structure of the hosts and their associated microbiome suggest that disturbance (i.e. stress) may play a significant role for the assembly of the natural microbiome. Such community shifts may in turn also feed back on the course of disease and the occurrence of mass mortality events in oyster populations.

Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria

The rpoH regulatory region of different members of the enteric bacteria family was sequenced or downloaded from GenBank and compared. In addition, the transcriptional start sites of rpoH of Yersinia frederiksenii and Proteus mirabilis, two distant members of this family, were determined. Sequences similar to the σ70 promoters P1, P4 and P5, to the σE promoter P3 and to boxes DnaA1, DnaA2, cAMP receptor protein (CRP) boxes CRP1, CRP2 and box CytR present in Escherichia coli K12, were identified in sequences of closely related bacteria such as: E.coli, Shigella flexneri, Salmonella enterica serovar Typhimurium, Citrobacter freundii, Enterobacter cloacae and Klebsiella pneumoniae. In more distant bacteria, Y.frederiksenii and P.mirabilis, the rpoH regulatory region has a distal P1-like σ70 promoter and two proximal promoters: a heat-induced σE-like promoter and a σ70 promoter. Sequences similar to the regulatory boxes were not identified in these bacteria. This study suggests that the general pattern of transcription of the rpoH gene in enteric bacteria includes a distal σ70 promoter, >200 nt upstream of the initiation codon, and two proximal promoters: a heat-induced σE-like promoter and a σ70 promoter. A second proximal σ70 promoter under catabolite-regulation is probably present only in bacteria closely related to E.coli.

Neonatal enteral feeding tubes as loci for colonisation by members of the Enterobacteriaceae

Background The objective of this study was to determine whether neonatal nasogastric enteral feeding tubes are colonised by the opportunistic pathogen Cronobacter spp. (Enterobacter sakazakii) and other Enterobacteriaceae, and whether their presence was influenced by the feeding regime. Methods One hundred and twenty-nine tubes were collected from two neonatal intensive care units (NICU). A questionnaire on feeding regime was completed with each sample. Enterobacteriaceae present in the tubes were identified using conventional and molecular methods, and their antibiograms determined. Results The neonates were fed breast milk (16%), fortified breast milk (28%), ready to feed formula (20%), reconstituted powdered infant formula (PIF, 6%), or a mixture of these (21%). Eight percent of tubes were received from neonates who were 'nil by mouth'. Organisms were isolated from 76% of enteral feeding tubes as a biofilm (up to 107 cfu/tube from neonates fed fortified breast milk and reconstituted PIF) and in the residual lumen liquid (up to 107 Enterobacteriaceae cfu/ml, average volume 250 µl). The most common isolates were Enterobacter cancerogenus (41%), Serratia marcescens (36%), E. hormaechei (33%), Escherichia coli (29%), Klebsiella pneumoniae (25%), Raoultella terrigena (10%), and S. liquefaciens (12%). Other organisms isolated included C. sakazakii (2%),Yersinia enterocolitica (1%),Citrobacter freundii (1%), E. vulneris (1%), Pseudomonas fluorescens (1%), and P. luteola (1%). The enteral feeding tubes were in place between < 6 h (22%) to > 48 h (13%). All the S. marcescens isolates from the enteral feeding tubes were resistant to amoxicillin and co-amoxiclav. Of additional importance was that a quarter of E. hormaechei isolates were resistant to the 3rd generation cephalosporins ceftazidime and cefotaxime. During the period of the study, K. pneumoniae and S. marcescens caused infections in the two NICUs. Conclusion This study shows that neonatal enteral feeding tubes, irrespective of feeding regime, act as loci for the bacterial attachment and multiplication of numerous opportunistic pathogens within the Enterobacteriaceae family. Subsequently, these organisms will enter the stomach as a bolus with each feed. Therefore, enteral feeding tubes are an important risk factor to consider with respect to neonatal infections.

Biological and chemical strategies for the recovery of precious and rare metals as nanoparticles

Tese de Doutoramento, Ciências do Mar da Terra e do Ambiente, Ramo: Ciências e Tecnologias do Ambiente, Especialidade em Biotecnologia, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2016