Comparative Analysis of Fatty Acid Desaturases in Cyanobacterial Genomes

Fatty acid desaturases are enzymes that introduce double bonds into the hydrocarbon chains of fatty acids. The fatty acid desaturases from 37 cyanobacterial genomes were identified and classified based upon their conserved histidine-rich motifs and phylogenetic analysis, which help to determine the amounts and distributions of desaturases in cyanobacterial species. The filamentous or N-2-fixing cyanobacteria usually possess more types of fatty acid desaturases than that of unicellular species. The pathway of acyl-lipid desaturation for unicellular marine cyanobacteria Synechococcus and Prochlorococcus differs from that of other cyanobacteria, indicating different phylogenetic histories of the two genera from other cyanobacteria isolated from freshwater, soil, or symbiont. Strain Gloeobacter violaceus PCC 7421 was isolated from calcareous rock and lacks thylakoid membranes. The types and amounts of desaturases of this strain are distinct to those of other cyanobacteria, reflecting the earliest divergence of it from the cyanobacterial line. Three thermophilic unicellular strains, Thermosynechococcus elongatus BP-1 and two Synechococcus Yellowstone species, lack highly unsaturated fatty acids in lipids and contain only one Delta 9 desaturase in contrast with mesophilic strains, which is probably due to their thermic habitats. Thus, the amounts and types of fatty acid desaturases are various among different cyanobacterial species, which may result from the adaption to environments in evolution. Copyright (c) 2008 Xiaoyuan Chi et al.

微藻脂肪酸去饱和酶基因的比较基因组学分析及重要基因功能的验证

不饱和脂肪酸是机体生物膜的重要组成成分，对生物膜结构、机能、相转变、通透性的调节及相关过程的调控有重要作用。并且，它参与细胞生物化学反应、转运过程和细胞应激反应，影响脂肪代谢、寻靶作用、免疫反应、耐寒、抗氧化等生理过程。此外，不饱和脂肪酸还是哺乳动物体内生成前列腺素、凝血哑烷和白三烯等激素的前体，具有提高人体免疫力、预防心血管疾病和癌症等重要的生理功能。本文对微藻中脂肪酸去饱和酶基因进行了比较基因组学分析；分离并验证了模式绿藻莱茵衣藻中Δ12去饱和酶基因的功能；克隆了南极小球藻NJ-7不饱和脂肪酸合成途径中的内质网型Δ12、Δ15去饱和酶基因和叶绿体型Δ12基因，并对内质网型Δ12基因的功能进行了研究。 1、对已测序的37株蓝藻的脂肪酸去饱和酶基因进行比较基因组学分析，发现，丝状或固氮蓝藻中具有的脂肪酸去饱和酶的种类一般多于单细胞蓝藻；海洋来源的聚球藻和原绿球藻的酰基-脂去饱和途径明显不同于其他来源的蓝藻，这两属的蓝藻与其他蓝藻可能具有不同的系统发育史；与嗜温蓝藻相比，三个嗜热蓝藻藻株，Thermosynechococcus elongatus BP-1， Synechococcus sp. JA-2-3B'a(2-13)，sp. JA-3-3Ab只含有Δ9去饱和酶基因，这可能与它们的生长环境（温泉）有关。 2、对已测序的7株真核微藻的脂肪酸去饱和酶基因进行比较基因组学分析，发现，真核微藻不饱和脂肪酸合成途径具有多样性。绿藻衣藻和团藻，O. tauri和O. lucimarinus，硅藻三角褐指藻和伪矮海链藻中均存在两条不饱和脂肪酸合成途径，原核途径和真核途径。原核途径位于叶绿体，真核途径位于内质网，但合成的脂肪酸产物有所不同。原始红藻C. merolae只含有3个去饱和酶基因，2个Δ9基因和1个Δ12基因。不饱和脂肪酸合成缺失了一条原核途径，明显不同于其他蓝藻、绿藻、硅藻和高等植物，这可能是由于它们的特定的生长环境（酸性火山温泉）导致的。 3、通过比较基因组学分析，从模式绿藻莱茵衣藻中发现了一个可能的内质网型Δ12去饱和酶基因（135825），以酿酒酵母作为表达系统，验证了该基因的功能，为明确该模式藻的脂肪酸合成途径提供了依据。 4、从南极小球藻NJ-7中克隆了参与不饱和脂肪酸合成途径的内质网型Δ12、Δ15去饱和酶基因和叶绿体型Δ12基因的部分cDNA���列，并利用RACE方法获得了内质网型Δ12基因的全长，以酿酒酵母作为表达系统，对该基因的功能进行了研究。 本研究首次利用比较基因组学的方法分析了37株蓝藻和7株真核微藻中的不饱和脂肪酸合成途径，在此基础上研究了莱茵衣藻135825基因的功能。并从南极绿藻小球藻中克隆了参与不饱和脂肪酸合成途径的内质网型Δ12、Δ15去饱和酶基因和叶绿体型Δ12基因，为进一步研究温度调节去饱和酶表达的模式，明确微藻低温适应的分子机理奠定了基础。

The Bopyridae (Crustacea: Isopoda) parasitic on thalassinideans (Crustacea: Decapoda) from China

Eight species among six genera of bopyrid isopods (representing the subfamilies Pseudionmae and loninae) infesting thalassinideans from China are reported. Of these, four species are new to science: Gyge.fujianensis n. sp., Progebiophilits elongatus n. sp., Upogebione bidigitatus n. sp., and Procepon liuruiyui n. sp., infesting Upogebia major (de Haan), Nihonotrypaea japonica Ortmann, Upogebia carinicauda (Stimpson), and Austinogebia wuhsienweni (Yu). One species, lone cornuta Bate, 1864, is recorded for the first time from Chinese waters and from a new host. Pseudione longicauda Shiino, 1937, Gyge ovalis (Shiino, 1939), and Progebiophilus sinicus Markham, 1982, previously known from Hong Kong or Taiwan, are recorded for the first time from mainland China, extending their range north.

Efectos de la relación entre hongos micorrícicos arbusculares y gramíneas forrajeras bajo defoliación y distinto suministro de fósforo

La asociación entre ra��ces de plantas y hongos micorrícicos arbusculares (HMA) incrementa la absorción de fósforo. Sin embargo, la defoliación puede influenciar el balance de la simbiosis y la recuperación de las plantas. El objetivo de esta tesis fue estudiar el efecto de la simbiosis micorrícica y el suministro de fósforo, sobre el crecimiento y la recuperación post-defoliación de gramíneas forrajeras cultivadas. Para esto, en primer lugar, se caracterizó la respuesta micorrícica de seis especies de gramíneas (tres templadas (C3) : i) Dactylis glomerata, ii) Elymus elongatus y iii) Schedonorus arundinaceus; y tres tropicales (C4) : iv) Paspalum dilatatum, v) Panicum coloratum y vi) Urochloa brizantha) creciendo en déficit nutricional. En estas condiciones, las gramíneas tropicales presentaron mayor respuesta micorrícica que las templadas. En segundo lugar, se estudió el rol de las micorrizas y el suministro de fósforo sobre el crecimiento y la nutrición de E. elongatus y U. brizantha, dos especies con respuestas micorrícicas contrastantes. Al aumentar el suministro de fósforo, en E. elongatus (especie con menor respuesta micorrícic) ) y U. brizantha (especie con mayor respuesta micorrícica) el cambio en la producción de biomasa, entre plantas inoculadas y no-inoculadas, disminuyó. Sin embargo, mostraron diferencias en la eficiencia en el uso del fósforo: U. brizantha hizo un mayor aprovechamiento del fósforo que E. elongatus. Por último, se caracterizaron respuestas de recuperación post-defoliación bajo distinto suministro de fósforo. En E. elongatus en alto fósforo, hubo un efecto parasítico de la micorriza sobre la recuperación post-defoliación. Por el contrario, en U. brizantha no se detectó un compromiso entre defoliación y micorrizas. La información generada en esta tesis servirá de base para mejorar el conocimiento de aspectos básicos de la relación entre hongos micorrícicos arbusculares y gramíneas forrajeras, como también, para establecer pautas de conservación de las relaciones simbióticas en sistemas pastoriles.

Presencia de especies del género Dreshslera en granos de Agropyron Elongatum : procedentes de diferentes zonas de cultivo

p.133-138

Flexible diel vertical migration behaviour of zooplankton in the Irish Sea

The diel vertical migration (DVM) of the whole plankton community was investigated in the central and coastal Irish Sea. Generally, more than 60% of the plankton did not perform significant DVM. A correlation analysis of the weighted mean depths of different organisms and their potential predators suggested relationships between two groups, Oithona spp., copepod nauplii and fish larvae, and between Pseudocalanus elongatus, Calanus spp. and chaetognaths. The organisms showing significant DVM were chaetognaths (Sagitta spp.), Calanus spp. and P. elongatus. Calanus spp. showed clear ontogenic variations in DVM, and along with P. elongatus demonstrated great flexibility both in the amplitude and direction of migration. P. elongatus did not migrate in the coastal area and Calanus spp. showed a clear reverse migration. The direction of migration appeared to be related to the vertical position of the chaetognaths in the water column during the day.

Digestion of copepod eggs by larval turbot Scophthalmus maximus and egg viability following gut passage

Between 20.5 and 93.6 % of the subitaneous eggs of 6 species of egg-carrying copepods passed undigested through the digestive tracts of larval and early postlarval turbot Scophthalmus maximus. Viability of the eggs of Eurytemora affinis, E. velox and Euterpina acutifrons remained high on egestion (67.0 to 91.7 %), Pseudocalanus elongatus and Oncaea venusta eggs had low viability (1.1 to 1.5 %), while all Corycaeus anglicus eggs were rendered inviable. The indigestibility of the eggs denies the turbot larvae a potentially valuable food resource, while retention of high egg viability in certain species reduces the effect of predation.

Questioning the role of phenology shifts and trophic mismatching in a planktonic food web

In a warming climate, differential shifts in the seasonal timing of predators and prey have been suggested to lead to trophic ‘‘mismatches’’ that decouple primary, secondary and tertiary production. We tested this hypothesis using a 25-year time-series of weekly sampling at the Plymouth L4 site, comparing 57 plankton taxa spanning 4 trophic levels. During warm years, there was a weak tendency for earlier timings of spring taxa and later timings of autumn taxa. While this is in line with many previous findings, numerous exceptions existed and only a few taxa (e.g. Gyrodinium spp., Pseudocalanus elongatus, and Acartia clausi) showed consistent, strong evidence for temperature-related timing shifts, revealed by all 4 of the timing indices that we used. Also, the calculated offsets in timing i.e. ‘‘mismatches’’) between predator and prey were no greater in extreme warm or cold years than during more average years. Further, the magnitude of these offsets had no effect on the ‘‘success’’ of the predator, in terms of their annual mean abundance or egg production rates. Instead numerous other factors override, including: inter-annual variability in food quantity, high food baseline levels, turnover rates and prolonged seasonal availability, allowing extended periods of production. Furthermore many taxa, notably meroplankton, increased well before the spring bloom. While theoretically a chronic mismatch, this likely reflects trade-offs for example in predation avoidance. Various gelatinous taxa (Phaeocystis, Noctiluca, ctenophores, appendicularians, medusae) may have reduced these predation constraints, with variable, explosive population outbursts likely responding to improved conditions. The match–mismatch hypothesis may apply for highly seasonal, pulsed systems or specialist feeders, but we suggest that the concept is being over-extended to other marine systems where multiple factors compensate.

New records of interesting xenophytes in the Iberian Peninsula. V

As a continuation of previous research on the naturalization of non-native vascular plants in the Iberian Peninsula new chorological data are presented for 16 xenophytes recorded between 2010 and 2014, mostly in the provinces of Huelva and Barcelona (Spain) and in the Algarve and Estremadura (Portugal). For each taxon details about distribution, habitats occupied, previous records, degree of naturalization, etc. are provided. Lachenalia bulbifera and Cyperus albostriatus are probably reported for the first time in the wild in Europe, as are Gamochaeta filaginea, and Dysphania anthelmintica and Oenothera lindheimeri for Portugal and Spain respectively. Cosmos bipinnatus is cited as a novelty for the Algarve (Portugal). Newly reported or confirmed for the province of Huelva are: Amaranthus hypochondriacus, Epilobium brachycarpum, Nephrolepis cordifolia, Ficus microcarpa, Tamarix parviflora and Tamarix ramosissima, while Atriplex semibaccata, Chloris truncata, and Elymus elongatus subsp. ponticus are new for Barcelona. Finally, Passiflora caerulea is a novelty for both Barcelona and Huelva provinces.

Cytogenetic mapping of the W chromosome in the genus Leporinus (Teleostei, Anostomidae) using a highly repetitive DNA sequence

Funda��ão de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Rovearinids (stemless crinoids) in the Albian carbonates of the offshore Santos Basin, southeastern Brazil: stratigraphic, palaeobiogeographic and palaeoceanographic significance

Microfacies analysis of marine carbonates cored by Petrobras well 1-SPS-6 in the offshore Santos Basin (southeastern Brazil) has revealed a remarkable fossil assemblage of calpionellids (colomiellids), favusellids, hedbergellids, globigerinelloidids, buliminids, radiolarians, inoceramid prisms, roveacrinids, and saccocomids(?) preserved in lower Albian calcimudstones-wackestones of the lower part of the Guaruja Formation. This assemblage represents an allochtonous accumulation in a deep neritic to shallow bathyal hypoxic environment. Besides 'saccocomid-like' sections, the only determinable sections of roveacrinids are thecal plates of Poecilocrinus dispandus elongatus Peck, 1943. This species was previously only known from the Weno Formation of Texas. The Brazilian material extends its records farther south from at least the lower Albian, which then represents the earliest occurrence of this peculiar family in the South Atlantic region. Taking into account their Albian global distribution and the location of their oldest representative (Hauterivian near Alicante, Spain), the Roveacrinidae dispersed westward throughout all of Cretaceous Tethys. The Tethyan origin of Roveacrinidae is further evidence that, during late Aptian-Albian times, the northern South Atlantic (north of the Walvis-SBo Paulo Ridge) was supplied by a Tethyan water mass. (C) 2001 Elsevier B.V. Ltd. All rights reserved.

Characterization and genome organization of a repetitive element associated with the nucleolus organizer region in leporinuselongatus (anostomidae: Characiformes)

Chromosome mapping and studies of the genomic organization of repetitive DNA sequences provide valuable insights that enhance our evolutionary and structural understanding of these sequences, as well as identifying chromosomal rearrangements and sex determination. This study investigated the occurrence and organization of repetitive DNA sequences in Leporinus elongatus using restriction enzyme digestion and the mapping of sequences by chromosomal fluorescence in situ hybridization (FISH). A 378-bp fragment with a 54.2% GC content was isolated after digestion with the SmaI restriction enzyme. BLASTN search found no similarity with previously described sequences, so this repetitive sequence was named LeSmaI. FISH experiments were conducted using L. elongatus and other Anostomidae species, i.e. L. macrocephalus,L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii, S. isognathus, and Abramites hypselonotus which detected signals that were unique to male and female L. elongatus individuals. Double-FISH using LeSmaI and 18S rDNA showed that LeSmaI was located in a nucleolus organizer region (NOR) in the male and female metaphases of L. elongatus. This report also discusses the role of repetitive DNA associated with NORs in the diversification of Anostomidae species karyotypes. Copyright © 2012 S. Karger AG, Basel.

Chromosome mapping of repetitive sequences in Anostomidae species: Implications for genomic and sex chromosome evolution

Background: Members of the Anostomidae family provide an interesting model system for the study of the influence of repetitive elements on genome composition, mainly because they possess numerous heterochromatic segments and a peculiar system of female heterogamety that is restricted to a few species of the Leporinus genus. The aim of this study was to isolate and identify important new repetitive DNA elements in Anostomidae through restriction enzyme digestion, followed by cloning, characterisation and chromosome mapping of this fragment. To identify repetitive elements in other Leporinus species and expand on studies of repetitive elements in Anostomidae, hybridisation experiments were also performed using previously described probes of LeSpeI repetitive elements. Results: The 628-base pair (bp) LeSpeII fragment was hybridised to metaphase cells of L. elongatus individuals as well as those of L. macrocephalus, L. obtusidens, L. striatus, L. lacustris, L. friderici, Schizodon borellii and S. isognathus. In L. elongatus, both male and female cells contained small clusters of LeSpeII repetitive elements dispersed on all of the chromosomes, with enrichment near most of the terminal portions of the chromosomes. In the female sex chromosomes of L. elongatus (Z2,Z2/W1W 2), however, this repeated element was absent. In the remaining species, a dispersed pattern of hybridisation was observed on all chromosomes irrespective of whether or not they were sex chromosomes. The repetitive element LeSpeI produced positive hybridisations signals only in L. elongatus, L. macrocephalus and L. obtusidens, i.e., species with differentiated sex chromosomes. In the remaining species, the LeSpeI element did not produce hybridisation signals. Conclusions: Results are discussed in terms of the effects of repetitive sequences on the differentiation of the Anostomidae genome, especially with respect to sex chromosome evolution. LeSpeII showed hybridisation patterns typical of Long Interspersed Elements (LINEs). The differential distribution of this element may be linked to sex chromosome differentiation in L. elongatus species. The relationship between sex chromosome specificity and the LeSpeI element is confirmed in the species L. elongatus, L. macrocephalus and L. obtusidens. © 2012 da Silva et al.; licensee BioMed Central Ltd.

Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting

Background: The Leporinus genus, belonging to the Anostomidae family, is an interesting model for studies of sex chromosome evolution in fish, particularly because of the presence of heteromorphic sex chromosomes only in some species of the genus. In this study we used W chromosome-derived probes in a series of cross species chromosome painting experiments to try to understand events of sex chromosome evolution in this family.Results: W chromosome painting probes from Leporinus elongatus, L. macrocephalus and L. obtusidens were hybridized to each others chromosomes. The results showed signals along their W chromosomes and the use of L. elongatus W probe against L. macrocephalus and L. obtusidens also showed signals over the Z chromosome. No signals were observed when the later aforementioned probe was used in hybridization procedures against other four Anostomidae species without sex chromosomes.Conclusions: Our results demonstrate a common origin of sex chromosomes in L. elongatus, L. macrocephalus and L. obtusidens but suggest that the L. elongatus chromosome system is at a different evolutionary stage. The absence of signals in the species without differentiated sex chromosomes does not exclude the possibility of cryptic sex chromosomes, but they must contain other Leporinus W sequences than those described here. © 2013 Parise-Maltempi et al.; licensee BioMed Central Ltd.

Aplica��ão de marcadores moleculares no monitoramento genético de programas de hibrida��ão interespecífica em pisciculturas brasileiras

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)