Organic geochemistry of sediments at DSDP Legs 56-57 Holes

The quantity, type, and maturity of the organic matter of Quaternary and Tertiary sediments from the Japan Trench (DSDP Leg 56, Sites 434 and 436; and Leg 57, Sites 438, 439 and 440) were determined. The hydrocarbons in lipid extracts were analyzed by capillary- column gas chromatography and combined gas chromatography/ mass spectrometry. Kerogen concentrates were investigated by microscopy, and vitrinite-reflectance values were determined. Measured organic-carbon values were in the range of 0.13 to 1.00 per cent. Extract yields, however, were extremely low. Normalized to organic carbon, total extracts ranged from 4.1 to 15.7 mg/g Corg. Gas chromatography of non-aromatic hydrocarbons showed that all sediments, except one Oligocene sample, contained very immature, mainly terrigenous organic material. This was indicated by n-alkane maxima at C29 and C31 and high odd-carbon-number predominances. Unsaturated steroid hydrocarbons were found to be major cyclic compounds in lower- and middle-Miocene samples from the upper inner trench slope (Sites 438 and 439). Perylene was the dominating aromatic hydrocarbon in all but the Oligocene sample. Microscopy showed kerogens rich in terrigenous organic particles, with a major portion of recycled vitrinite. Nevertheless, almost all the liptinite particles appeared to be primary. This is a paradox, as the bulk of the samples were composed of hemipelagic mineral matter with a major siliceous biogenic (planktonic) component. A trend of reduced size and increased roundness can be seen for the vitrinite/ inertinite particles from west to east (from upper inner trench slope to outer trench slope). All sediments but one are relatively immature, with mean huminite-reflectance values (Ro)in the range of 0.30 to 0.45 per cent. The oldest and deepest sediment investigated, an Oligocene sandstone from Site 439, yielded a mean vitrinitereflectance value of 0.74 per cent and a mature n-alkane distribution. This sample may indicate a geothermal event in late Oligocene time. It failed to affect the overlying lower Miocene and may have been caused by an intrusion. Boulders of acidic igneous rocks in the Oligocene can be interpreted as witnesses of nearby volcanic activity accompanied by intrusions.

(Table 1) Carbon and isotopic composition of organic carbon in sediments from DSDP Leg 56 Holes

We have analyzed inorganic and organic carbons and determined the isotopic composition of both sedimentary organic carbon and inorganic carbon in carbonates contained in sediments recovered from Holes 434, 434A, 434B, 435, and 435A in the landward slope of Japan and from Hole 436 in the oceanic slope of the Japan Trench. Both inorganic and organic carbons were assayed at the P. P. Shirshov Institute of Oceanology, in the same sample, using the Knopp technique and measuring evolved CO2 gravimetrically. Each sample was analyzed twice in parallel. Measurements were of a ±0.05 per cent accuracy and a probability level of 0.95. Carbon isotopic analysis was carried out on a MI-1305 mass spectrometer at the I. M. Gubkin Institute of Petrochemical and Gas Industry and the results presented as dC13 values related to the PDB standard. The procedure for preparing samples for organic carbon isotopic analysis involved (1) drying damp sediments at 60°C; (2) treating samples, while heating, with 10 N HCl to remove carbonate carbon; and (3) evaporating surplus HCl at 60°C. The organic substance was turned to CO2 by oxidizing it in an oxygen atmosphere. To prepare samples for inorganic carbon isotopic analysis we decomposed the carbonates with orthophosphoric acid and refined the gas evolved. The dC13 measurements, including a full cycle of sample preparation, were of a ±0.5 per cent accuracy and a probability level of 0.95.

(Table 1) Pigments isolated from DSDP Leg 56 Holes

A relatively well documented record of intermediate and late chlorophyll diagenesis in marine sediments now exists. Intermediate diagenetic stages include conversion of chlorins to DPEP-series porphyrins and subsequent chelation with nickel, vanadyl, and, in special cases, copper. Increasing thermal stress leads to etio-series generation and transalkylation (Baker, 1969; Baker and Smith, 1975; Baker et al., 1977; Palmer and Baker, in press). In contrast, the early transformations of clorophyll are still largely unknown. Very early diagenetic reactions must certainly include loss of magnesium, deesterification, decarboxylation, reduction of ring-conjugating groups, and finally, oxidative-aromatization of carbons 7 and 8 in ring IV to yield free-base porphyrins (Baker and Smith, 1973; Smith and Baker, 1974). Chlorins (7,8-dihydroporphyrins) are very difficult to isolate and identify, because of hydrocarbon impurities which absorb in the blue to violet region of the electromagnetic spectrum and which co-chromatograph with the pigments. Further complications possibly can arise from artifact formation during isolation. In the present study, twelve DSDP Leg 56 core samples, ranging in sub-bottom depth from 4 to 420 meters and in age from Pleistocene to middle Miocene, were analyzed for tetrapyrrole pigments. Chlorins, in concentrations ranging from about 4 to less than 0.002 µg/g sediment, wet weight, were the only tetrapyrroles found. A carotenoid (tetraterpene) was isolated from Section 434-1-3.

Coarse-silt-fraction mineralogy at DSDP Legs 56 and 57 Holes

Soviet sedimentologists use the term "coarse silt" to denote the size fraction 0.1 to 0.05 mm (50-100 µm). Petelin (1961) has shown that this fraction is most diagnostic for terrigeneous and volcanogenic mineral assemblages and provinces in Recent deep-sea sediments, because of its greatest variability of both heavy and light non-opaque minerals, which may be easily identified by the common immersion method. We believe that the fraction is suitable for mineralogical study of unconsolidated and friable sediments from DSDP cores as well, if the objective is to investigate their source area and transporation tracks. In the case of fine-grained oceanic sediments, mineral composition of the coarse silt does not differ markedly from that of the "coarse fraction" (>62 µm).

Geochemistry of the Japan Trench sediments at DSDP Legs 56-57 Holes

The main objective of this investigation was to study distribution of main chemical constituents and several minor elements in sediment sections drilled during DSDP Legs 56 and 57 in the Japan Trench, in order to infer geochemical features of different lithologic types of sediments, and to find out how the geochemistry is associated with major lithologic constituents, such as terrigenous detrital matter, clay, volcanic ash, and biogenic particles. The geochemical data may help to indicate the nature of the sediments and to interpret sedimentation processes. The analyzed samples seem to be representative of most lithologic units, sub-units, and sediment types drilled at all sites on both legs, except for some shallow-water deposits at Sites 438 and 439. We analyzed bulk-sediment composition by X-ray fluorescence (Kuzmina and Turanskaya) and routine wet-chemical methods (Mikhailov); amorphous SiO2, extracted in a boiling sodium carbonate solution (Analythical Laboratory, P. P. Shirshov Institute of Oceanology); Cr, Zn, Cu, Ni, Co, and Al by atomic absorption (Gordeev); and Sn, Pb, Zn, Cu, Ni, Co, Cr, V, B, and Ag by quantitative spectrographic analyses in both bulk samples and granulometric fractions (Mikhailov). In addition, Fe, Ti, Mn, and CaCO3 have been determined in selected samples by routine wet-chemical methods (Analytical Laboratory, P. P. Shirshov Institute of Oceanology). Murdmaa was responsible for interpretation of the results.

Mineral and chemical compositions of clay sediments from the Pacific Ocean, DSDP data

Mineral and chemical compositions, as well as conditions of formation of clay sediments in major structural elements of the Pacific Ocean floor with different ages are under consideration in the monograph. Depending on evolution of the region two ways of clay sediment formation are identified: terrigenous and authigenic. It is shown that terrigenous clay sediments predominate in marginal parts of the Pacific Ocean. Authigenic mineral formation occurring in the basal part of the sedimentary cover primarily results from removal of material from underlying basalts. This material is released during secondary alteration of the basalts due to their interaction with sea water, as well as with deep solutions.

Reply to the discussion by Karen Johannesson on “Rare earth element geochemistry of scleractinian coral skeleton during meteoric diagenesis: a sequence through neomorphism of aragonite to calcite” by Webb et al., Sedimentology, 56, 1433-1463

Webb et al. (2009) described a late Pleistocenecoral sample wherein the diagenetic stabilization of original coral aragonite to meteoric calcite was halted more or less mid-way through the process, allowing direct comparison of pre-diagenetic and post-diagenetic microstructure and trace element distributions. Those authors found that the rare earth elements (REEs) were relatively stable during meteoric diagenesis, unlike divalent cations such as Sr,and it was thus concluded that original, in this case marine, REE distributions potentially could be preserved through the meteoric carbonate stabilization process that must have affected many, if not most, ancient limestones. Although this was not the case in the analysed sample, they noted that where such diagenesis took place in laterally transported groundwater, trace elements derived from that groundwater could be incorporated into diagenetic calcite, thus altering the initial REE distribution (Banner et al., 1988). Hence, the paper was concerned with the diagenetic behaviour of REEs in a groundwater-dominated karst system. The comment offered by Johannesson (2011) does not question those research results, but rather, seeks to clarify an interpretation made by Webb et al. (2009) of an earlier paper, Johannesson et al. (2006).

Hole mobility of 3.56 cm2V−1s−1accomplished using more extended dithienothiophene with furan flanked diketopyrrolopyrrole polymer

A highly extended dithienothiophene comonomer building block was used in combination with highly fused aromatic furan substituted diketopyrrolopyrrole for the synthesis of novel donor–acceptor alternating copolymer PDPPF-DTT. Upon testing PDPPF-DTT as a channel semiconductor in top contact bottom gate organic field effect transistors (OFETs), it was found to exhibit p-channel behaviour. The highest hole mobility of 3.56 cm2 V−1 s−1 was reported for PDPPF-DTT. To our knowledge, this is the highest mobility reported so far for the furan flanked diketopyrrolopyrrole class of copolymers using conventional device geometry with straightforward processing.

Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture

Bone mineral density (BMD) is the most widely used predictor of fracture risk. We performed the largest meta-analysis to date on lumbar spine and femoral neck BMD, including 17 genome-wide association studies and 32,961 individuals of European and east Asian ancestry. We tested the top BMD-associated markers for replication in 50,933 independent subjects and for association with risk of low-trauma fracture in 31,016 individuals with a history of fracture (cases) and 102,444 controls. We identified 56 loci (32 new) associated with BMD at genome-wide significance (P < 5 × 10−8). Several of these factors cluster within the RANK-RANKL-OPG, mesenchymal stem cell differentiation, endochondral ossification and Wnt signaling pathways. However, we also discovered loci that were localized to genes not known to have a role in bone biology. Fourteen BMD-associated loci were also associated with fracture risk (P < 5 × 10−4, Bonferroni corrected), of which six reached P < 5 × 10−8, including at 18p11.21 (FAM210A), 7q21.3 (SLC25A13), 11q13.2 (LRP5), 4q22.1 (MEPE), 2p16.2 (SPTBN1) and 10q21.1 (DKK1). These findings shed light on the genetic architecture and pathophysiological mechanisms underlying BMD variation and fracture susceptibility.