Helical repeat of DNA in the region of homologous pairing.

The process of DNA strand exchange during general genetic recombination is initiated within protein-stabilized synaptic filaments containing homologous regions of interacting DNA molecules. The RecA protein in bacteria and its analogs in eukaryotic organisms start this process by forming helical filamentous complexes on single-stranded or partially single-stranded DNA molecules. These complexes then progressively bind homologous double-stranded DNA molecules so that homologous regions of single- and double-stranded DNA molecules become aligned in register while presumably winding around common axis. The topological assay presented herein allows us to conclude that in synaptic complexes containing homologous single- and double-stranded DNA molecules, all three DNA strands have a helicity of approximately 19 nt per turn.

Threading dislocation lines in two-sided flux-array decorations

Two-sided flux decoration experiments indicate that threading dislocation lines (TDLs), which cross the entire film, are sometimes trapped in metastable states. We calculate the elastic energy associated with the meanderings of a TDL. The TDL behaves as an anisotropic and dispersive string with thermal fluctuations largely along its Burgers vector. These fluctuations also modify the structure factor of the vortex solid. Both effects can, in principle, be used to estimate the elastic moduli of the material.

Cross section of a resonant-mass detector for scalar gravitational waves

Gravitationally coupled scalar fields, originally introduced by Jordan, Brans and Dicke to account for a non-constant gravitational coupling, are a prediction of many non-Einsteinian theories of gravity not excluding perturbative formulations of string theory. In this paper, we compute the cross sections for scattering and absorption of scalar and tensor gravitational waves by a resonant-mass detector in the framework of the Jordan-Brans-Dicke theory. The results are then specialized to the case of a detector of spherical shape and shown to reproduce those obtained in general relativity in a certain limit. Eventually we discuss the potential detectability of scalar waves emitted in a spherically symmetric gravitational collapse.

Perturbations on domain walls and strings: A covariant theory

A covariant formalism is developed for describing perturbations on vacuum domain walls and strings. The treatment applies to arbitrary domain walls in (N+1)-dimensional flat spacetime, including the case of bubbles of a true vacuum nucleating in a false vacuum. Straight strings and planar walls in de Sitter space, as well as closed strings and walls nucleating during inflation, are also considered. Perturbations are represented by a scalar field defined on the unperturbed wall or string world sheet. In a number of interesting cases, this field has a tachyonic mass and a nonminimal coupling to the world-sheet curvature.

Black holes from nucleating strings

We evaluate the probability that a loop of string that has spontaneously nucleated during inflation will form a black hole upon collapse, after the end of inflation. We then use the observational bounds on the density of primordial black holes to put constraints on the parameters of the model. Combining these constraints with current upper limits on the expansion rate during inflation, we conclude that the density of black holes formed from nucleating strings is too low to be observed. Also, constraints on domain wall nucleation and monopole pair production during inflation are briefly discussed.

Bubbles in Kaluza-Klein theories with spacelike or timelike internal dimensions

region to the other. We also present a C-type solution that describes neutral bubbles in uniform acceleration, and we use it to construct an instanton that mediates the breaking of a cosmic string by forming bubbles at its ends. The rate for this process is also calculated. Finally, we argue that a similar solution can be constructed for magnetic bubbles, and that it can be used to describe a semiclassical instability of the two-timing vacuum against production of massless monopole pairs.

Can extreme black Holes have (long) Abelian Higgs hair?

It has been argued that a black hole horizon can support the long-range fields of a Nielsen-Olesen string and that one can think of such a vortex as black hole "hair." In this paper, we examine the properties of an Abelian Higgs vortex in the presence of a charged black hole as we allow the hole to approach extremality. Using both analytical and numerical techniques, we show that the magnetic field lines (as well as the scalar field) of the vortex are completely expelled from the black hole in the extreme limit. This was to be expected, since extreme black holes in Einstein-Maxwell theory are known to exhibit such a "Meissner effect" in general. This would seem to imply that a vortex does not want to be attached to an extreme black hole. We calculate the total energy of the vortex fields in the presence of an extreme black hole. When the hole is small relative to the size of the vortex, it is energetically favored for the hole to remain inside the vortex region, contrary to the intuition that the hole should be expelled. However, as we allow the extreme horizon radius to become very large compared to the radius of the vortex, we do find evidence of an instability. This proves that it is energetically unfavorable for a thin vortex to interact with a large extreme black hole. This would seem to dispel the notion that a black hole can support "long" Abelian Higgs hair in the extreme limit. We show that these considerations do not go through in the near-extreme limit. Finally, we discuss the implications for strings that end at black holes, as in the processes where a string snaps by nucleating black holes.

Superconducting p-branes and extremal black holes

In Einstein-Maxwell theory, magnetic flux lines are "expelled" from a black hole as extremality is approached, in the sense that the component of the field strength normal to the horizon goes to zero. Thus, extremal black holes are found to exhibit the sort of ¿Meissner effect¿ which is characteristic of superconducting media. We review some of the evidence for this effect and present new evidence for it using recently found black hole solutions in string theory and Kaluza-Klein theory. We also present some new solutions, which arise naturally in string theory, which are non-superconducting extremal black holes. We present a nice geometrical interpretation of these effects derived by looking carefully at the higher dimensional configurations from which the lower dimensional black hole solutions are obtained. We show that other extremal solitonic objects in string theory (such as p-branes) can also display superconducting properties. In particular, we argue that the relativistic London equation will hold on the world volume of ¿light¿ superconducting p-branes (which are embedded in flat space), and that minimally coupled zero modes will propagate in the adS factor of the near-horizon geometries of "heavy," or gravitating, superconducting p-branes.

Black diholes

We present and analyze exact solutions of the Einstein-Maxwell and Einstein-Maxwell-dilaton equations that describe static pairs of oppositely charged extremal black holes, i.e., black diholes. The holes are suspended in equilibrium in an external magnetic field, or held apart by cosmic strings. We comment as well on the relation of these solutions to brane-antibrane configurations in string and M theory.

Supersymmetric black rings and three-charge supertubes

We present supergravity solutions for 1/8-supersymmetric black supertubes with three charges and three dipoles. Their reduction to five dimensions yields supersymmetric black rings with regular horizons and two independent angular momenta. The general solution contains seven independent parameters and provides the first example of nonuniqueness of supersymmetric black holes. In ten dimensions, the solutions can be realized as D1-D5-P black supertubes. We also present a worldvolume construction of a supertube that exhibits three dipoles explicitly. This description allows an arbitrary cross section but captures only one of the angular momenta.

Cosmic strings and Einstein-Rosen soliton waves

We consider all generalized soliton solutions of the Einstein-Rosen form in the cylindrical context. They are Petrov type-I solutions which describe solitonlike waves interacting with a line source placed on the symmetry axis. Some of the solutions develop a curvature singularity on the axis which is typical of massive line sources, whereas others just have the conical singularity revealing the presence of a static cosmic string. The analysis is based on the asymptotic behavior of the Riemann and metric tensors, the deficit angle, and a C-velocity associated to Thornes C-energy. The C-energy is found to be radiated along the null directions.

Semiclassical equations for weakly inhomogeneous cosmologies

The in-in effective action formalism is used to derive the semiclassical correction to Einsteins equations due to a massless scalar quantum field conformally coupled to small gravitational perturbations in spatially flat cosmological models. The vacuum expectation value of the stress tensor of the quantum field is directly derived from the renormalized in-in effective action. The usual in-out effective action is also discussed and it is used to compute the probability of particle creation. As one application, the stress tensor of a scalar field around a static cosmic string is derived and the back-reaction effect on the gravitational field of the string is discussed.

Optimal network topologies for local search with congestion

The problem of searchability in decentralized complex networks is of great importance in computer science, economy, and sociology. We present a formalism that is able to cope simultaneously with the problem of search and the congestion effects that arise when parallel searches are performed, and we obtain expressions for the average search cost both in the presence and the absence of congestion. This formalism is used to obtain optimal network structures for a system using a local search algorithm. It is found that only two classes of networks can be optimal: starlike configurations, when the number of parallel searches is small, and homogeneous-isotropic configurations, when it is large.