Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12

Laboratory strains and natural isolates of Escherichia coli differ in their level of stress resistance due to strain variation in the level of the sigma factor sigma(S) (or RpoS), the transcriptional master controller of the general stress response. We found that the high level of RpoS in one laboratory strain (MC4100) was partially dependent on an elevated basal level of ppGpp, an alarmone responding to stress and starvation. The elevated ppGpp was caused by two mutations in spoT, a gene associated with ppGpp synthesis and degradation. The nature of the spoT allele influenced the level of ppGpp in both MC4100 and another commonly used K-12 strain, MG1655. Introduction of the spoT mutation into MG1655 also resulted in an increased level of RpoS, but the amount of RpoS was lower in MG1655 than in MC4100 with either the wild-type or mutant spoT allele. In both MC4100 and MG1655, high ppGpp concentration increased RpoS levels, which in turn reduced growth with poor carbon sources like acetate. The growth inhibition resulting from elevated ppGpp was relieved by rpoS mutations. The extent of the growth inhibition by ppGpp, as well as the magnitude of the relief by rpoS mutations, differed between MG1655 and MC4100. These results together suggest that spoT mutations represent one of several polymorphisms influencing the strain variation of RpoS levels. Stress resistance was higher in strains with the spoT mutation, which is consistent with the conclusion that microevolution affecting either or both ppGpp and RpoS can reset the balance between self-protection and nutritional capability, the SPANC balance, in individual strains of E coli.

Identification of enteropathogenic and enterohaemorrhagic Escherichia coli strains by immunoserological detection of intimin

Aims: To evaluate the sensitivity and specificity of polyclonal and monoclonal antibodies (Mabs) against intimin in the detection of enteropathogenic and enterohaemorrhagic Escherichia coli isolates using immunoblotting. Methods and Results: Polyclonal and Mabs against the intimin-conserved region were raised, and their reactivities were compared in enteropathogenic E. coli (EPEC) and enterohaemorrhagic E. coli (EHEC) isolates using immunoblotting analysis. In comparison with rat antiserum, rabbit anti-intimin IgG-enriched fraction had a stronger recognition pattern to a wide spectrum of intimin types in different EPEC and EHEC serotypes. On the other hand, murine monoclonal IgG2b specific to intimin, with dissociation constant of 1 center dot 3 x 10-8 mol l-1, failed in the detection of some of these isolates. Conclusion: All employed antibodies showed 100% specificity, not reacting with any of the eae-negative isolates. The sensitivity range was according to the employed antisera, and 97% for rabbit anti-intimin IgG-enriched fraction, followed by 92% and 78% sensitivity with rat antisera and Mab. Significance and Impact of the Study: The rabbit anti-intimin IgG-enriched fraction in immunoblotting analysis is a useful tool for EPEC and EHEC diagnoses.

Divergence Involving Global Regulatory Gene Mutations in an Escherichia coli Population Evolving under Phosphate Limitation

Many of the important changes in evolution are regulatory in nature. Sequenced bacterial genomes point to flexibility in regulatory circuits but we do not know how regulation is remodeled in evolving bacteria. Here, we study the regulatory changes that emerge in populations evolving under controlled conditions during experimental evolution of Escherichia coli in a phosphate-limited chemostat culture. Genomes were sequenced from five clones with different combinations of phenotypic properties that coexisted in a population after 37 days. Each of the distinct isolates contained a different mutation in 1 of 3 highly pleiotropic regulatory genes (hfq, spoT, or rpoS). The mutations resulted in dissimilar proteomic changes, consistent with the documented effects of hfq, spoT, and rpoS mutations. The different mutations do share a common benefit, however, in that the mutations each redirect cellular resources away from stress responses that are redundant in a constant selection environment. The hfq mutation lowers several individual stress responses as well the small RNA-dependent activation of rpoS translation and hence general stress resistance. The spoT mutation reduces ppGpp levels, decreasing the stringent response as well as rpoS expression. The mutations in and upstream of rpoS resulted in partial or complete loss of general stress resistance. Our observations suggest that the degeneracy at the core of bacterial stress regulation provides alternative solutions to a common evolutionary challenge. These results can explain phenotypic divergence in a constant environment and also how evolutionary jumps and adaptive radiations involve altered gene regulation.

Shiga toxin-producing Escherichia coli and atypical enteropathogenic Escherichia coli strains isolated from healthy sheep of different populations in Sao Paulo, Brazil

Aims: Sheep are important carriers of Shiga toxin-producing Escherichia coli (STEC) in several countries. However, there are a few reports about ovine STEC in American continent. Methods and Results: About 86 E. coli strains previously isolated from 172 healthy sheep from different farms were studied. PCR was used for detection of stx(1), stx(2), eae, ehxA and saa genes and for the identification of intimin subtypes. Restriction fragment length polymorphism (RFLP)-PCR was performed to investigate the variants of stx(1) and stx(2), and the flagellar antigen (fliC) genes in nonmotile isolates. Five isolates were eae(+) and stx(-), and belonged to serotypes O128:H2/beta-intimin (2), O145:H2/gamma, O153:H7/beta and O178:H7/epsilon. Eighty-one STEC isolates were recovered, and the stx genotypes identified were stx(1c)stx(2d-O118) (46.9%), stx(1c) (27.2%), stx(2d-O118) (23.4%), and stx(1c)stx(2dOX3a) (2.5%). Pulsed-field gel electrophoresis (PFGE) revealed 27 profiles among 53 STEC and atypical enteropathogenic Escherichia coli (EPEC) isolates. Conclusions: This study demonstrated that healthy sheep in Sao Paulo, Brazil, can be carriers of potential human pathogenic STEC and atypical EPEC. Significance and Impact of the Study: As some of the STEC serotypes presently found have been involved with haemolytic uraemic syndrome (HUS) in other countries, the important role of sheep as sources of STEC infection in our settings should not be disregarded.

Transcriptional Processing of the pst Operon of Escherichia coli

The pst operon of Escherichia coli is composed of five genes that encode a high-affinity phosphate transport system. pst belongs to the PHO regulon, which is a group of genes and operons that are induced in response to phosphate limitation. The pst operon also has a regulatory role in the repression of PHO genes` transcription under phosphate excess conditions. Transcription of pst is initiated at the promoter located upstream to the first gene, pstS. Immediately after its synthesis, the primary transcript of pst is cleaved into shorter mRNA molecules in a ribonuclease E-dependent manner. Other ribonucleases, such as RNase III and MazF, do not play a role in pst mRNA processing. RNase E is thus at least partially responsible for processing the pst primary transcript.

Characterization of the alpha-haemolysin determinant from the human enteropathogenic Escherichia coli O26 plasmid pEO5

The 157-kb conjugative plasmid pEO5 encoding alpha-haemolysin in strains of human enteropathogenic Escherichia coli (EPEC) O26 was investigated for its relationship with EHEC-haemolysin-encoding plasmids of enterohaemorrhagic E. coli (EHEC) O26 and O157 strains. Plasmid pEO5 was found to be compatible with EHEC-virulence plasmids and did not hybridize in Southern blots with plasmid pO157 from the EHEC O157:H7 strain EDL933, indicating that both plasmids were unrelated. A 9227-bp stretch of pEO5 DNA encompassing the entire alpha-hlyCABD operon was sequenced and compared for similarity to plasmid and chromosomally inherited alpha-hly determinants. The alpha-hly determinant of pEO5 (7252 bp) and its upstream region was most similar to corresponding sequences of the murine E. coli alpha-hly plasmid pHly152, in particular, the structural alpha-hlyCABD genes (99.2% identity) and the regulatory hlyR regions (98.8% identity). pEO5 and alpha-hly plasmids of EPEC O26 strains from humans and cattle were very similar for the regions encompassing the structural alpha-hlyCABD genes. The major difference found between the hly regions of pHly152 and pEO5 is caused by the insertion of an IS2 element upstream of the hlyC gene in pHly152. The presence of transposon-like structures at both ends of the alpha-hly sequence indicates that this pEO5 virulence factor was probably acquired by horizontal gene transfer.

Stability of the pstS transcript of Escherichia coli

The pst operon of Escherichia coli is composed of five genes that encode a high-affinity phosphate transport system. As a member of the PHO regulon, pst transcription is activated under phosphate shortage conditions. Under phosphate-replete conditions, the pst operon also functions as a negative regulator of the PHO genes. Transcription of pst is initiated at the promoter located upstream to the first gene, pstS. Immediately after its synthesis, the primary transcript of pst is cleaved into shorter mRNA molecules. The transcription unit corresponding to pstS is significantly more abundant than the transcripts of the other pst genes due to stabilisation of pstS mRNA by a repetitive extragenic palindrome (REP) structure downstream to the pstS locus. The presence of the REP sequence also results in an increased level of PstS proteins. However, the surplus level of PstS proteins produced in the presence of REP does not contribute to the repressive role of Pst in PHO expression.

Alternative promoters in the pst operon of Escherichia coli

The pst operon of Escherichia coli is composed of five genes pstS, pstC, pstA, pstB and phoU, that encode a high-affinity phosphate transport system and a negative regulator of the PHO regulon. Transcription of pst is induced under phosphate shortage and is initiated at the promoter located upstream of the first gene of the operon, pstS. Here, we show by four different technical approaches the existence of additional internal promoters upstream of pstC, pstB and phoU. These promoters are not induced by Pi-limitation and do not possess PHO-box sequences. Plasmids carrying the pst internal genes partially complement chromosomal mutations in their corresponding genes, indicating that they are translated into functional proteins.

Crystallographic Structure of Phosphofructokinase-2 from Escherichia coli in Complex with Two ATP Molecules. Implications for Substrate Inhibition

Phosphofructokinase-1 and -2 (Pfk-1 and Pfk-2, respectively) from Escherichia coli belong to different homologous superfamilies. However, in spite of the lack of a common ancestor, they share the ability to catalyze the same reaction and are inhibited by the substrate MgATP. Pfk-2, an ATP-dependent 6-phosphofructokinase member of the ribokinase-like superfamily, is a homodimer of 66 kDa subunits whose oligomerization state is necessary for catalysis and stability. The presence of MgATP favors the tetrameric form of the enzyme. In this work, we describe the structure of Pfk-2 in its inhibited tetrameric form, with each subunit bound to two ATP molecules and two Mg ions. The present structure indicates that substrate inhibition occurs due to the sequential binding of two MgATP molecules per subunit, the first at the usual site occupied by the nucleotide in homologous enzymes and the second at the allosteric site, making a number of direct and Mg-mediated interactions with the first. Two configurations are observed for the second MgATP, one of which involves interactions with Tyr23 from the adjacent subunit in the dimer and the other making an unusual non-Watson-Crick base pairing with the adenine in the substrate ATP. The oligomeric state observed in the crystal is tetrameric, and some of the structural elements involved in the binding of the Substrate and allosteric ATPs are also participating in the dimer-dimer interface. This structure also provides the grounds to compare analogous features of the nonhomologous phosphofructokinases from E. coli. (C) 2008 Elsevier Ltd. All rights reserved.

The Crystal Complex of Phosphofructokinase-2 of Escherichia coli with Fructose-6-phosphate KINETIC AND STRUCTURAL ANALYSIS OF THE ALLOSTERIC ATP INHIBITION

Substrate inhibition by ATP is a regulatory feature of the phosphofructokinases isoenzymes from Escherichia coli (Pfk-1 and Pfk-2). Under gluconeogenic conditions, the loss of this regulation in Pfk-2 causes substrate cycling of fructose-6-phosphate (fructose-6-P) and futile consumption of ATP delaying growth. In the present work, we have broached the mechanism of ATP-induced inhibition of Pfk-2 from both structural and kinetic perspectives. The crystal structure of Pfk-2 in complex with fructose-6-P is reported to a resolution of 2 angstrom. The comparison of this structure with the previously reported inhibited form of the enzyme suggests a negative interplay between fructose-6-P binding and allosteric binding of MgATP. Initial velocity experiments show a linear increase of the apparent K(0.5) for fructose-6-P and a decrease in the apparent k(cat) as a function of MgATP concentration. These effects occur simultaneously with the induction of a sigmoidal kinetic behavior (n(H) of approximately 2). Differences and resemblances in the patterns of fructose-6-P binding and the mechanism of inhibition are discussed for Pfk-1 and Pfk-2, as an example of evolutionary convergence, because these enzymes do not share a common ancestor.

Heterologous expression in Escherichia coli of Neurospora crassa neutral trehalase as an active enzyme

Neutral trehalase from Neurospora crassa was expressed in Escherichia coli as a polypeptide of similar to 84 kDa in agreement with the theoretical size calculated from the corresponding cDNA. The recombinant neutral trehalase, purified by affinity chromatography exhibited a specific activity of 80-150 mU/mg protein. Optima of pH and temperature were 7.0 and 30 degrees C, respectively. The enzyme was absolutely specific for trehalose, and was quite sensitive to incubation at 40 degrees C. The recombinant enzyme was totally dependent on calcium, and was inhibited by ATP, copper, silver, aluminium and cobalt. K(M) was 42 mM, and V(max) was 30.6 nmol of glucose/min. The recombinant protein was phosphorylated by cAMP-dependent protein kinase, but not significantly activated. Immunoblotting with polyclonal antiserum prepared against the recombinant protein showed that neutral trehalase protein levels increased during exponential phase of N. crassa growth and dropped at the stationary phase. This is the first report of a neutral trehalase produced in E. coli with similar biochemical properties described for fungi native neutral trehalases, including calcium-dependence. (C) 2008 Elsevier Inc. All rights reserved.

Avaliação da estabilidade fisico-química da solução de hipoclorito de sódio a 0,5% utilizada pela FarmaUSCS, e de sua eficácia bactericida sobre Staphylococcus aureus e Escherichia coli

A FarmaUSCS é um projeto de extensão do curso de Farmácia da Universidade Municipal de São Caetano do Sul, que tem por finalidade manipular e dispensar medicamentos para a comunidade, além de servir de campo de estágio e de desenvolvimento de projetos de pesquisa. O presente trabalho teve por objetivo avaliar a estabilidade físico-química da solução aquosa de hipoclorito de sódio a 0,5%, utilizada para a desinfecção de ambientes produtivos na FarmaUSCS, bem como sua eficácia como agente bactericida sobre Staphylococcus aureus e Escherichia coli. Para a estabilidade físico-química, amostras da solução foram submetidas a diferentes condições ambientais e determinado o teor de hipoclorito por iodometria. A eficácia do desinfetante foi realizada pela técnica da diluição em tubos. Em nenhuma das condições ambientais testadas, houve degradação do teor de hipoclorito de sódio. A solução aquosa de hipoclorito de sódio a 0,5% foi eficaz diante de S. aureus e E. coli, já a partir do tempo mínimo testado de 2,5 minutos de exposição.

A influência da alimentação com diferentes níveis de vitamina E e selênio sobre a produção de imunoglobulina Y (IgY) no soro de poedeiras leves vacinadas contra Escherichia coli e encefalomielite aviária

Foram estudados os efeitos da suplementação de vitamina E (VE) e selênio (Se) sobre a imunidade de galinhas vacinadas contra Escherichia coli (EC) patogênica para suínos e com o vírus da encefalomielite aviária (VEA). Foram avaliados peso corporal (PC), peso de ovos (PO) e produção de anticorpos (AcP) em noventa poedeiras (H&N nick chick) com 49 semanas de idade alimentadas à vontade com dietas suplementadas com 0, 50, 150, 250 e 250 UI VE/kg + 0,3 ppm de Se. Às 51 semanas de idade, metade das galinhas foram vacinadas contra EC e todas as aves foram vacinadas contra VEA. Duas semanas após, receberam uma segunda dose da vacina contra EC. Amostras de sangue foram coletadas semanalmente e a quantidade de IgY foi determinada por ELISA, como densidade ótica (DO). As aves vacinadas apresentaram maior DO do que as aves não vacinadas (P≤0,05). As DO foram significativamente aumentadas (P≤0,05) quando as aves vacinadas foram alimentadas com 50 e 150 UI de VE/kg e comparadas com as DO das aves que receberam a dieta de 250 UI de VE + Se. Se não afetou AcP, PC e PO. A vacinação e a VE suplementada não afetaram PC. O PO não foi afetado pela vacinação, mas foi maior (P≤0,05) nas semanas 3, 5 e 7, quando as poedeiras receberam 250 UI VE/kg e comparados com aquelas que receberam 50, 150 e 0. A AcP contra VEA foi influenciada pela VE (P≤0,13). Cento e cinqüenta UI VE e 0 UI VE aumentaram IgY produzida, quando comparados a 250 UI. Também o Se aumentou AcP. Os resultados deste estudo sugerem que níveis médios de VE aumentam a produção de IgY por poedeiras vacinadas e Se adicionado ao mais alto nível de VE também possui efeito imunomodulador.

Controle da diarréia suína no período de aleitamento através do fornecimento de gemas de ovos de galinhas hiperimunizadas contra Escherichia coli suína

Foi estudado o efeito das gemas de ovos de aves hiperimunizadas contra Escherichia coli patogênica para suínos sobre a imunidade passiva (IP) de leitões recém-nascidos em uma unidade produtora de leitões (UPL). Foram avaliados densidade ótica do ELISA (DO), peso corporal (PC) e ocorrência de diarréia diária (OcD) em 137 leitões recém-nascidos oriundos de 25 fêmeas primíparas não vacinadas contra E. coli. De cada fêmea, foram separados 6 leitões recémnascidos de ambos os sexos, excluindo-se os mais leves e os mais pesados, divididos em 3 tratamentos e 2 repetições. A análise estatística para DO e PC foi realizada através de ANOVA, a comparação de médias entre tratamentos pelo Lsmeans e o teste do qui-quadradro para a OcD. As gemas estavam armazenadas à -5ºC, in natura e, minutos antes do fornecimento, foram descongeladas e diluídas em 15 mL de uma solução tampão (PBS). Os tratamentos foram fornecidos via oral, tendo sido os seguintes: T1: 2mL de PBS (controle) em 2 doses, a primeira ao nascer e a segunda 2 horas após o nascimento; T2: 2mL de gemas de ovos com título de 100.000 de anticorpos (IgY) contra E. coli em 2 doses, ao nascer e 2 horas após o nascimento; T3: idem ao T2, além de 2mL de gema de 3 em 3 dias até os leitões completarem 12 dias de idade. Foram realizadas duas coletas de sangue em 1 leitão/tratamento/porca: a primeira às 24 horas e a segunda aos 14 dias de idade. O título de IgY contra E. coli dos soros foi determinado por ELISA. A DO do ELISA dos leitões de T2 e T3 foi significativamente maior às 24 horas e aos 14 dias em relação ao controle (P≤0,0001). T3, T2 e T1 permaneceram 87, 79 e 72,5% do tempo estudado sem diarréia (P≤X20,0001). Os animais de T3 foram significativamente mais pesados do que os do T1 (P≤0,08), mas não diferiram de T2. Os resultados deste estudo sugerem que o uso de gemas de aves hiperimunizadas contra E. coli age efetivamente na prevenção da diarréia dos leitões e o seu uso contínuo é mais vantajoso do que o fornecimento somente ao nascer.

Sobrevivência de Escherichia coli,Staphylococcus aureus e Salmonella Enteritidis durante o armazenamento de hambúrguer de frango

Com o objetivo de avaliar a sobrevivência ao congelamento de microrganismos potencialmente patogênicos, hambúrgueres de frango foram contaminados com Escherichia coli (ECHC), Staphylococcus aureus (SAFH) e Salmonella Enteritidis (SE86) e armazenados a -18ºC. Os mesmos microrganismos e ainda E. coli ATCC 25972, S. aureus ATCC 25923, and S. Enteritidis ATCC 13076 também foram inoculados em água peptonada 0,1% e congelados a -18ºC, a fim de avaliar um possível efeito protetor dos componentes do hambúrguer sobre os microrganismos. A quantificação dos microrganismos foi realizada nos intervalos de 0, 1, 2, 3, 4, 7, 14, 21 e 28 dias de congelamento. Com o propósito de estudar as alterações nos ácidos graxos das células microbianas expostas ao congelamento, foram extraídos os ácidos graxos de cada bactéria, congelada e não congelada, e estes foram analisados por cromatografia gasosa. Os resultados demonstraram que, de modo geral, houve uma redução média de menos de 1 unidade logarítmica (log10) no número de células artificialmente inoculadas em hambúrgueres de frango. As reduções obtidas para cada microrganismo em água peptonada 0,1% foram significativamente (P0,05) maiores do que as reduções observadas em hambúrguer de frango, sugerindo a existência de um efeito crioprotetor dos componentes do hambúrguer. Em todos os experimentos, as reduções mais expressivas foram observadas nas primeiras semanas de congelamento. Ocorreram alterações expressivas na composição de ácidos graxos de S. aureus (SAFH) e S. aureus ATCC 25923, o que pode indicar que estes microrganismos alteraram a composição dos seus ácidos graxos como resposta ao estresse causado pelo congelamento.