Avaliando a confiabilidade interavaliadores de um instrumento para classificação de pacientes: coeficiente Kappa

Este estudo teve como objetivo determinar a confiabilidade interavaliadores do instrumento de classificação de pacientes proposto por Perroca. Cinqüenta pacientes escolhidos aleatoriamente foram avaliados por enfermeiras lotadas na UTI de um hospital de ensino. O coeficiente Kappa foi utilizado para a avaliação do grau de concordância nos escores totais obtidos pelas enfermeiras. A análise de confiabilidade revelou um Kappa entre 0,68 e 0,90 com IC de 95%, indicando uma boa concordância. O estudo permitiu concluir que o instrumento apresenta evidência de confiabilidade.

Simultaneous co-expression of memory- and effector-related genes by individual human CD8 T cells depends on antigen specificity and differentiation

Purpose/Objective: Phenotypic and functional T cell properties are usually analyzed at the level of defined cell populations. However, large differences between individual T cells may have important functional consequences. To answer this issue, we performed highly sensitive single-cell gene expression profiling, which allows the direct ex vivo characterization of individual virus- and tumor-specific T cells from healthy donors and melanoma patients. Materials and methods: HLA-A*0201-positive patients with stage III/ IV metastatic melanoma were included in a phase I clinical trial (LUD- 00-018). Patients received monthly low-dose of the Melan-AMART- 1 26_35 unmodified natural (EAAGIGILTV) or the analog A27L (ELAGIGILTV) peptides, mixed CPG and IFA. Individual effector memory CD28+ (EM28+) and EM28- tetramer-specific CD8pos T cells were sorted by flow cytometer. Following direct cell lysis and reverse transcription, the resulting cDNA was precipitated and globally amplified. Semi-quantitative PCR was used for gene expression and TCR BV repertoire analyses. Results: We have previously shown that vaccination with the natural Melan-A peptide induced T cells with superior effector functions as compared to the analog peptide optimized for enhanced HLA binding. Here we found that natural peptide vaccination induced EM28+ T cells with frequent co-expression of both memory/homing-associated genes (CD27, IL7R, EOMES, CXCR3 and CCR5) and effector-related genes (IFNG, KLRD1, PRF1 and GZMB), comparable to protective EBV- and CMV-specific T cells. In contrast, memory/homing- and effectorassociated genes were less frequently co-expressed after vaccination with the analog peptide. Conclusions: These findings reveal a previously unknown level of gene expression diversity among vaccine- and virus-specific T cells with the simultaneous co-expression of multiple memory/homing- and effector- related genes by the same cell. Such broad functional gene expression signatures within antigen-specific T cells may be critical for mounting efficient responses to pathogens or tumors. In summary, direct ex vivo high-resolution molecular characterization of individual T cells provides key insights into the processes shaping the functional properties of tumor- and virus-specific T cells.

Antimicrobial peptide genes in Bacillus strains from plant environments

The presence of the antimicrobial peptide (AMP) biosynthetic genes srfAA (surfactin), bacA (bacylisin), fenD (fengycin), bmyB (bacyllomicin), spaS (subtilin), and ituC (iturin) was examined in 184 isolates of Bacillus spp. obtained from plant environments (aerial, rhizosphere, soil) in the Mediterranean land area of Spain. Most strains had between two and four AMP genes whereas strains with five genes were seldom detected and none of the strains had six genes. The most frequent AMP gene markers were srfAA, bacA, bmyB, and fenD, and the most frequent genotypes srfAA-bacA-bmyB and srfAAbacA-bmyB-fenD. The dominance of these particular genes in Bacillus strains associated with plants reinforces the competitive role of surfactin, bacyllomicin, fengycin, and bacilysin in the fitness of strains in natural environments. The use of these AMP gene markers may assist in the selection of putative biological control agents of plant pathogens

Sistemas de classificação de pacientes como instrumentos de gestão em Unidades de Terapia Intensiva

Trata-se de uma abordagem teórica sobre diferentes instrumentos de medida assistenciais e gerenciais utilizados para a determinação da gravidade dos pacientes, quantificação das demandas de cuidados, estimativa da real necessidade de profissionais de enfermagem e custo da assistência intensiva, o que os torna recursos facilitadores de gestão. Neste artigo, apresentam-se diferentes instrumentos de medida voltados à classificação de pacientes em unidades de Terapia Intensiva (UTIs), considerando-se tanto os índices de gravidade quanto os de carga de trabalho de enfermagem. Discutem-se facilidades e dificuldades inerentes à implementação desses instrumentos.

Circadian clock genes and sleep homeostasis.

Circadian and sleep-homeostatic processes both contribute to sleep timing and sleep structure. Elimination of circadian rhythms through lesions of the suprachiasmatic nuclei (SCN), the master circadian pacemaker, leads to fragmentation of wakefulness and sleep but does not eliminate the homeostatic response to sleep loss as indexed by the increase in EEG delta power. In humans, EEG delta power declines during sleep episodes nearly independently of circadian phase. Such observations have contributed to the prevailing notion that circadian and homeostatic processes are separate but recent data imply that this segregation may not extend to the molecular level. Here we summarize the criteria and evidence for a role for clock genes in sleep homeostasis. Studies in mice with targeted disruption for core circadian clock genes have revealed alterations in circadian rhythmicity as well as changes in sleep duration, sleep structure and EEG delta power. Clock-gene expression in brain areas outside the SCN, in particular the cerebral cortex, depends to a large extent on prior sleep-wake history. Evidence for effects of clock genes on sleep homeostasis has also been obtained in Drosophila and humans, pointing to a phylogenetically preserved pathway. These findings suggest that, while within the SCN clock genes are utilized to set internal time-of-day, in the forebrain the same feedback circuitry may be utilized to track time spent awake and asleep. The mechanisms by which clock-gene expression is coupled to the sleep-wake distribution could be through cellular energy charge whereby clock genes act as energy sensors. The data underscore the interrelationships between energy metabolism, circadian rhythmicity, and sleep regulation.

Genetics for clinicians: from candidate genes to whole genome scans (technological advances).

Human genetics has progressed at an unprecedented pace during the past 10 years. DNA microarrays currently allow screening of the entire human genome with high level of coverage and we are now entering the era of high-throughput sequencing. These remarkable technical advances are influencing the way medical research is conducted and have boosted our understanding of the structure of the human genome as well as of disease biology. In this context, it is crucial for clinicians to understand the main concepts and limitations of modern genetics. This review will describe key concepts in genetics, including the different types of genetic markers in the human genome, review current methods to detect DNA variation, describe major online public databases in genetics, explain key concepts in statistical genetics and finally present commonly used study designs in clinical and epidemiological research. This review will therefore concentrate on human genetic variation analysis.

Classificação Internacional de Práticas de Enfermagem em Saúde Coletiva - CIPESC®

O projeto da Classificação Internacional da Prática de Enfermagem em Saúde Coletiva - CIPESCfoi a contribuição brasileira para incorporar a noção do coletivo na Classificação Internacional da Prática de Enfermagem CIPE. O artigo tem como objetivo analisar a produção bibliográfica acerca das classificações de enfermagem, disponíveis na base de dados da biblioteca virtual em saúde, a partir de 1990. Trata-se de uma pesquisa bibliográfica sobre os sistemas classificatórios das práticas de enfermagem, e que faz parte de uma pesquisa que pretende identificar a face coletiva do instrumento CIPESCna rede municipal de saúde de Curitiba-PR. Constatou-se que, referente aos sistemas classificatórios em geral, a maioria dos textos acessados baseia-se no modelo clínico-individual e os que enfatizam o modelo epidemiológico e social ainda é minoria. Além disso, a maioria dos estudos, com enfoque no coletivo, é divulgada pelas publicações da Associação Brasileira de Enfermagem, tornando-a hegemônica na disseminação dos conhecimentos acerca do tema, em sua face coletiva.

Sistema de classificação de pacientesna enfermagem psiquiátrica: validação clínica

A escassez de publicações a respeito de dimensionamento de pessoal na enfermagem psiquiátrica motivou o desenvolvimento de um Instrumento para Classificar o Nível de Dependência na Enfermagem Psiquiátrica, etapa inicial para o estabelecimento da quantidade necessária de profissionais na Equipe de Enfermagem da especialidade. Os objetivos deste estudo buscaram a validação clínica, por meio de testes de confiabilidade e validade do constructo, além da verificação de sua aplicabilidade na prática gerencial do enfermeiro. Foram utilizadas duas amostras, sendo n=40 pares de instrumentos preenchidos na Fase 1 da coleta de dados e n=100 instrumentos preenchidos na Fase 3 do estudo, tendo sido aplicados diferentes critérios estatísticos, entre eles, o coeficiente Kappa e a correlação de Spearman. O Instrumento para Classificar o Nível de Dependência na Enfermagem Psiquiátrica foi considerado confiável com índices satisfatórios de concordância e o constructo foi validado, determinando o grau de dependência do paciente portador de transtornos mentais.

Instrumento para classificação de pacientes: opinião de usuários e análise de indicadores de cuidado

Esta pesquisa descritiva foi conduzida com o intuito de: 1.)investigar a opinião de usuários sobre um instrumento de classificação de pacientes; e 2.) analisar os indicadores de cuidados que mais contribuem para a classificação dos pacientes nas diferentes categorias de cuidados. A opinião dos 24 usuários foi obtida por meio de questionário. O instrumento de classificação foi aplicado em 796 pacientes em um hospital de ensino no interior do Estado de São Paulo, no período de setembro de 2006 a maio de 2007. Para o tratamento estatístico, utilizou-se a Análise de Componentes Principais (ACP) e Análise Discriminante. Os usuários investigados mostraram-se satisfeitos com o instrumento utilizado, mas apontaram uma tendência do mesmo à subestimar a categoria de cuidados à qual o paciente pertence. Os resultados evidenciaram os indicadores Terapêutica, Cuidado Corporal, Educação à Saúde e Integridade Cutâneo-Mucosa como aqueles com maior capacidade discriminatória. A classificação correta dos pacientes variou de 89,8% (cuidados semi-intensivos) a 95,6% (cuidados intensivos).

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

Selective pressures related to gene function and chromosomal architecture are acting on genome sequences and can be revealed, for instance, by appropriate genometric methods. Cumulative nucleotide skew analyses, i.e., GC, TA, and ORF orientation skews, predict the location of the origin of DNA replication for 88 out of 100 completely sequenced bacterial chromosomes. These methods appear fully reliable for proteobacteria, Gram-positives, and spirochetes as well as for euryarchaeotes. Based on this genome architecture information, coorientation analyses reveal that in prokaryotes, ribosomal RNA (rRNA) genes encoding the small and large ribosomal subunits are all transcribed in the same direction as DNA replication; that is, they are located along the leading strand. This result offers a simple and reliable method for circumscribing the region containing the origin of the DNA replication and reveals a strong selective pressure acting on the orientation of rRNA genes similar to the weaker one acting on the orientation of ORFs. Rate of coorientation of transfer RNA (tRNA) genes with DNA replication appears to be taxon-specific. Analyzing nucleotide biases such as GC and TA skews of genes and plotting one against the other reveals a taxonomic clusterization of species. All ribosomal RNA genes are enriched in Gs and depleted in Cs, the only so far known exception being the rRNA genes of deuterostomian mitochondria. However, this exception can be explained by the fact that in the chromosome of the human mitochondrion, the model of the deuterostomian organelle genome, DNA replication, and rRNA transcription proceed in opposite directions. A general rule is deduced from prokaryotic and mitochondrial genomes: ribosomal RNA genes that are transcribed in the same direction as the DNA replication are enriched in Gs, and those transcribed in the opposite direction are depleted in Gs.

Sox genes in C. elegans: sox-2 role in postembryonic development

Report for the scientific sojourn carried out at the Columbia University, United States, from 2010 to 2012. Expression of SoxB genes correlates with the commitment of cells to a neural fate; however, the relevance of SoxB proteins in early vertebrate neurogenesis has been difficult to prove genetically due to embryonic lethality and presumed redundant functions. The nematode C. Elegants has only 5 sox genes: sox-2 and sox-3 form the SoxB group while sem-2, sox-4 and egl-13 belong to other Sox groups. Our results show that sox-2 and sem-2 are the sox genes expressed earliest and in a broader manner during embryogenesis, being expressed in several neuronal progenitors. sox-3, sox-4 and egl-13 are expressed in few cells during late embryogenesis, when most neurons are already born. Both sox-2 and sem-2 null mutants are early larval lethal but do not show neuronal specification defects during embryonic development as indicated by quantification of a panneuronal reporter. Potential redundancy or compensatory mechanisms between different sox genes have been ruled out, strongly suggesting that sox genes are not required for specification of embryonically-derived neurons. However, at the first larval stage there are still several blast cells that will give rise to different postembryonic lineages, which generate several neurons amongst other cell types. nterestingly, sox-2 is expressed in many of these progenitor cells. Using mosaic analysis we have so far identified neurons derived from two different postembryonic lineages which fail to be generated in C. elegans sox-2 mutants. These results support the idea that postembryonic progenitor competence is compromised in the absence of sox-2.

Repression of flagellar genes in exponential phase by CsgD and CpxR, two crucial modulators of Escherichia coli biofilm formation.

Escherichia coli adapts its lifestyle to the variations of environmental growth conditions, swapping between swimming motility or biofilm formation. The stationary-phase sigma factor RpoS is an important regulator of this switch, since it stimulates adhesion and represses flagellar biosynthesis. By measuring the dynamics of gene expression, we show that RpoS inhibits the transcription of the flagellar sigma factor, FliA, in exponential growth phase. RpoS also partially controls the expression of CsgD and CpxR, two transcription factors important for bacterial adhesion. We demonstrate that these two regulators repress the transcription of fliA, flgM, and tar and that this regulation is dependent on the growth medium. CsgD binds to the flgM and fliA promoters around their -10 promoter element, strongly suggesting direct repression. We show that CsgD and CpxR also affect the expression of other known modulators of cell motility. We propose an updated structure of the regulatory network controlling the choice between adhesion and motility.

The CNGCb and CNGCd genes from Physcomitrella patens moss encode for thermosensory calcium channels responding to fluidity changes in the plasma membrane.

Land plants need precise thermosensors to timely establish molecular defenses in anticipation of upcoming noxious heat waves. The plasma membrane-embedded cyclic nucleotide-gated Ca(2+) channels (CNGCs) can translate mild variations of membrane fluidity into an effective heat shock response, leading to the accumulation of heat shock proteins (HSP) that prevent heat damages in labile proteins and membranes. Here, we deleted by targeted mutagenesis the CNGCd gene in two Physcomitrella patens transgenic moss lines containing either the heat-inducible HSP-GUS reporter cassette or the constitutive UBI-Aequorin cassette. The stable CNGCd knockout mutation caused a hyper-thermosensitive moss phenotype, in which the heat-induced entry of apoplastic Ca(2+) and the cytosolic accumulation of GUS were triggered at lower temperatures than in wild type. The combined effects of an artificial membrane fluidizer and elevated temperatures suggested that the gene products of CNGCd and CNGCb are paralogous subunits of Ca(2+)channels acting as a sensitive proteolipid thermocouple. Depending on the rate of temperature increase, the duration and intensity of the heat priming preconditions, terrestrial plants may thus acquire an array of HSP-based thermotolerance mechanisms against upcoming, otherwise lethal, extreme heat waves.

Bioinformática: interfaz web para mostrar las relaciones de expresión entre grupos de genes

El projecte que es presenta en aquesta memòria està composat per un preproces i una aplicació web. L’objectiu del treball realizat és mostrar les relacions d’expresió entre grups de gens. A més de dissenyar l’aplicació web en : http://revolutionresearch.uab.es que permetrà l’estudi dels resultats obtinguts.

Confusões e ambigüidades na classificação de eventos adversos em pesquisa clínica

É comum considerar ambíguo como sinônimo de confuso. Em uma informação confusa, várias informações têm um mesmo significado. Na informação ambígua, ao contrário, vários significados são atribuídos a uma mesma palavra. Informações excessivas também geram ambiguidade, daí a necessidade de concisão e clareza na linguagem. O termo evento adverso (EA) é definido como qualquer ocorrência médica inconveniente, sofrida por um sujeito da pesquisa em investigação clínica. A confusão e a ambiguidade no uso de palavras podem gerar conseqüências importantes na valorização de EAs. O objetivo deste estudo, de natureza teórica, é harmonizar o vocabulário utilizado na caracterização dos riscos e na comunicação de EAs na pesquisa clínica. Os EAs podem ser classificados quanto à previsibilidade, frequência, gravidade, causalidade e seriedade. Muitas vezes, em documentos regulatórios, os EAs são definidos em função da seriedade e causalidade. A harmonização do vocabulário na comunicação de EAs é fundamental para evitar a utilização equivocada de palavras com sentido confuso, ou ambíguo.