Segregation of Two Spectrin Isoforms: Polarized Membrane-binding Sites Direct Polarized Membrane Skeleton Assembly

Spectrin isoforms are often segregated within specialized plasma membrane subdomains where they are thought to contribute to the development of cell surface polarity. It was previously shown that ankyrin and β spectrin are recruited to sites of cell–cell contact in Drosophila S2 cells expressing the homophilic adhesion molecule neuroglian. Here, we show that neuroglian has no apparent effect on a second spectrin isoform (αβH), which is constitutively associated with the plasma membrane in S2 cells. Another membrane marker, the Na,K-ATPase, codistributes with ankyrin and αβ spectrin at sites of neuroglian-mediated contact. The distributions of these markers in epithelial cells in vivo are consistent with the order of events observed in S2 cells. Neuroglian, ankyrin, αβ spectrin, and the Na,K-ATPase colocalize at the lateral domain of salivary gland cells. In contrast, αβH spectrin is sorted to the apical domain of salivary gland and somatic follicle cells. Thus, the two spectrin isoforms respond independently to positional cues at the cell surface: in one case an apically sorted receptor and in the other case a locally activated cell–cell adhesion molecule. The results support a model in which the membrane skeleton behaves as a transducer of positional information within cells.

Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes

We created a simulation based on experimental data from bacteriophage T7 that computes the developmental cycle of the wild-type phage and also of mutants that have an altered genome order. We used the simulation to compute the fitness of more than 105 mutants. We tested these computations by constructing and experimentally characterizing T7 mutants in which we repositioned gene 1, coding for T7 RNA polymerase. Computed protein synthesis rates for ectopic gene 1 strains were in moderate agreement with observed rates. Computed phage-doubling rates were close to observations for two of four strains, but significantly overestimated those of the other two. Computations indicate that the genome organization of wild-type T7 is nearly optimal for growth: only 2.8% of random genome permutations were computed to grow faster, the highest 31% faster, than wild type. Specific discrepancies between computations and observations suggest that a better understanding of the translation efficiency of individual mRNAs and the functions of qualitatively “nonessential” genes will be needed to improve the T7 simulation. In silico representations of biological systems can serve to assess and advance our understanding of the underlying biology. Iteration between computation, prediction, and observation should increase the rate at which biological hypotheses are formulated and tested.

Auxin-Growth Relationships in Maize Coleoptiles and Pea Internodes and Control by Auxin of the Tissue Sensitivity to Auxin

Growth of a zone of maize (Zea mays L.) coleoptiles and pea (Pisum sativum L.) internodes was greatly suppressed when the organ was decapitated or ringed at an upper position with the auxin transport inhibitor N-1-naphthylphthalamic acid (NPA) mixed with lanolin. The transport of apically applied 3H-labeled indole-3-acetic acid (IAA) was similarly inhibited by NPA. The growth suppressed by NPA or decapitation was restored by the IAA mixed with lanolin and applied directly to the zone, and the maximal capacity to respond to IAA did not change after NPA treatment, although it declined slightly after decapitation. The growth rate at IAA saturation was greater than the rate in intact, nontreated plants. It was concluded that growth is limited and controlled by auxin supplied from the apical region. In maize coleoptiles the sensitivity to IAA increased more than 3 times when the auxin level was reduced over a few hours with NPA treatment. This result, together with our previous result that the maximal capacity to respond to IAA declines in pea internodes when the IAA level is enhanced for a few hours, indicates that the IAA concentration-response relationship is subject to relatively slow adaptive regulation by IAA itself. The spontaneous growth recovery observed in decapitated maize coleoptiles was prevented by an NPA ring placed at an upper position of the stump, supporting the view that recovery is due to regenerated auxin-producing activity. The sensitivity increase also appeared to participate in an early recovery phase, causing a growth rate greater than in intact plants.

Links between replication and recombination in Saccharomyces cerevisiae: A hypersensitive requirement for homologous recombination in the absence of Rad27 activity

The RAD27 gene of Saccharomyces cerevisiae encodes a 5′-3′ flap exo/endonuclease, which plays an important role during DNA replication for Okazaki fragment maturation. Genetic studies have shown that RAD27 is not essential for growth, although rad27Δ mutants are temperature sensitive. Moreover, they exhibit increased sensitivity to alkylating agents, enhanced spontaneous recombination, and repetitive DNA instability. The conditional lethality conferred by the rad27Δ mutation indicates that other nuclease(s) can compensate for the absence of Rad27. Indeed, biochemical and genetical analyses indicate that Okazaki fragment processing can be assured by other enzymatic activities or by alternative pathways such as homologous recombination. Here we present the results of a screen that makes use of a synthetic lethality assay to identify functions required for the survival of rad27Δ strains. Altogether, we confirm that all genes of the Rad52 recombinational repair pathway are required for the survival of rad27Δ strains at both permissive (23°C) and semipermissive (30°C) temperatures for growth. We also find that several point mutations that confer weaker phenotypes in mitotic than in meiotic cells (rad50S, mre11s) and additional gene deletions (com1/sae2, srs2) exhibit synthetic lethality with rad27Δ and that rad59Δ exhibits synergistic effects with rad27Δ. This and previous studies indicate that homologous recombination is the primary, but not only, pathway that functions to bypass the replication defects that arise in the absence of the Rad27 protein.

Platelet-derived growth factor BB induces functional vascular anastomoses in vivo.

Neovascularization that generates collateral blood flow can limit the extent of tissue damage after acute ischemia caused by occlusion of the primary blood supply. The neovascular response stimulated by the BB homodimeric form of recombinant platelet-derived growth factor (PDGF-BB) was evaluated for its capacity to protect tissue from necrosis in a rat skin flap model of acutely induced ischemia. Complete survival of the tissue ensued, when the original nutritive blood supply was occluded, as early as 5 days after local PDGF-BB application, and the presence of a patent vasculature was evident compared to control flaps. To further evaluate the vascular regenerative response, PDGF-BB was injected into the muscle/connective tissue bed between the separated ends of a divided femoral artery in rats. A patent new vessel that functionally reconnected the ends of the divided artery within the original 3- to 4-mm gap was regenerated 3 weeks later in all PDGF-BB-treated limbs. In contrast, none of the paired control limbs, which received vehicle with an inactive variant of PDGF-BB, had vessel regrowth (P < 0.001). The absence of a sustained inflammatory response and granulation tissue suggests locally delivered PDGF-BB may directly stimulate the angiogenic phenotype in endothelial cells. These findings indicate that PDGF-BB can generate functional new blood vessels and nonsurgically anastomose severed vessels in vivo. This study supports the possibility of a therapeutic modality for the salvage of ischemic tissue through exogenous cytokine-induced vascular reconnection.

Hādhā kitāb Kurūm ʻarāyis al-tahānī sharḥ Ṣalawāt Ibn Mashīsh al-Dānī / taʼlīf al-Imām al-Fāḍil al-Ṣūfī al-Humām al-Shaykh Muṣṭafá al-Bakrī al-Ṣiddīqī al-Khalwatī : manuscript, 1840

Author's own abridgement of his longer commentary on Moroccan sufi Ibn Mashīsh's prayer book known as Ṣalawāt. Longer version is titled: Rawḍāt al-ʻarshīyah fī al-kalām ʻala al-Ṣalawāt al-Mashīshīyah.

Hādhā kitāb Ḥusn al-muḥāḍarah fī akhbār Miṣr wa-al-Qāhirah / lil-Imām al-Mujtahid al-Ḥafīẓ Jalāl al-Dīn ʻAbd al-Raḥmān al-Asyūṭī : manuscript, 1844

Vol. 1 of a multi-volume set.

Kitāb Laṭāʼif akhbār al-uwal fī-man taṣarrafa fī Miṣr min al-duwal / taʼlīf sayyidinā wa-mawlānā al-ʻālim al-ʻallāmah Muḥammad ibn ʻAbd al-Muʻṭī ibn Abī al-Fatḥ ibn Aḥmad ibn ʻAbd al-Ghanī ibn ʻAlī al-Isḥāqī al-Shāfiʻī : manuscript, 1733

بسم الله الرحمن الرحيم فهو حبي اكفي الحمد لله الملك العزيز في ملكه واقتذاره الذي ملك الوجود يقوته واوجد بارادته واختياره... :Incipit

Kitāb al-Uns wa-al-īnās fī futūḥ Ifrīqīyah ilá madīnat Fās : manuscript, 1795

الحمد لله مانح النعم فضلا من عنده المحسن بما يقوم به احدا بحقه وان بالغ غاية جهده... :Incipit

Kitāb al-Jaʻrāfīyah : manuscript, undated

Probably Zuhrī's third edition of the "al-Ṣūrah al-Maʼmūnīya" (al-Maʼmūn's "Mappa Mundi").

Maqāmāt : manuscript, undated

بسم الله الرحمن الرحيم اللهم انا نحمدك على ما علمت في البيان والهمت في البيان كما نحمدك على ما مبعت في الغطا... :Incipit

Mihr va Mushtarī : manuscript, undated

According to a note in a later hand on fly leaf 1, poem composed in 1376 AD.

Dekâiku'l-hakâik : manuscript, undated

A work on subtleties of Persian vocabulary. Discusses nuances of and differences in meaning between homographs or near-homographs and words derived from similar stems. Pronunciations, etymologies, differences in usage discussed. Poems used as examples.

Menâkıb-ı Mevlânâ : manuscript, [1827]

Legends about Jalāladdīn Rūmī. One lengthy story narrates a conversation the author had with Rūmī in his dream.

Sharḥ al-Nukhbah fī uṣūl ʻilm al-ḥadīth / lil-ʻAllāmah Ibn Ḥajar : manuscript, 1725 or 1726

Title from f. 1r.