Assessment of microbial community structure changes by amplified ribosomal DNA restriction analysis (ARDRA)

Amplified ribosomal DNA restriction analysis (ARDRA) is a simple method based on restriction endonuclease digestion of the amplified bacterial 16S rDNA. In this study we have evaluated the suitability of this method to detect differences in activated sludge bacterial communities fed on domestic or industrial wastewater, and subject to different operational conditions. The ability of ARDRA to detect these differences has been tested in modified Ludzack-Ettinger (MLE) configurations. Samples from three activated sludge wastewater treatment plants (WWTPs) with the MLE configuration were collected for both oxic and anoxic reactors, and ARDRA patterns using double enzyme digestions AluI+MspI were obtained. A matrix of Dice similarity coefficients was calculated and used to compare these restriction patterns. Differences in the community structure due to influent characteristics and temperature could be observed, but not between the oxic and anoxic reactors of each of the three MLE configurations. Other possible applications of ARDRA for detecting and monitoring changes in activated sludge systems are also discussed

Genetic manipulation of adult-born hippocampal neurons rescues memory in a mouse model of Alzheimer's disease.

In adult mammals, neural progenitors located in the dentate gyrus retain their ability to generate neurons and glia throughout lifetime. In rodents, increased production of new granule neurons is associated with improved memory capacities, while decreased hippocampal neurogenesis results in impaired memory performance in several memory tasks. In mouse models of Alzheimer's disease, neurogenesis is impaired and the granule neurons that are generated fail to integrate existing networks. Thus, enhancing neurogenesis should improve functional plasticity in the hippocampus and restore cognitive deficits in these mice. Here, we performed a screen of transcription factors that could potentially enhance adult hippocampal neurogenesis. We identified Neurod1 as a robust neuronal determinant with the capability to direct hippocampal progenitors towards an exclusive granule neuron fate. Importantly, Neurod1 also accelerated neuronal maturation and functional integration of new neurons during the period of their maturation when they contribute to memory processes. When tested in an APPxPS1 mouse model of Alzheimer's disease, directed expression of Neurod1 in cycling hippocampal progenitors conspicuously reduced dendritic spine density deficits on new hippocampal neurons, to the same level as that observed in healthy age-matched control animals. Remarkably, this population of highly connected new neurons was sufficient to restore spatial memory in these diseased mice. Collectively our findings demonstrate that endogenous neural stem cells of the diseased brain can be manipulated to become new neurons that could allow cognitive improvement.

Análise de modelos matemáticos aplicados ao estudo de chuvas intensas

A estimativa de chuvas intensas máximas é de grande importância para o dimensionamento de projetos agrícolas, tais como: terraços para controle de erosão, obras de barragens de terra e drenagem em solo agrícola. As chuvas são caracterizadas pela sua intensidade (mm h-1), pelo tempo de duração (min) e pelo período de retorno (anos). O modelo básico tem sido usado para determinação da intensidade de precipitação máxima diária a ser aplicada no dimensionamento de estruturas de contenção, fixando-se o período de retorno e a duração da chuva. O tempo de concentração em bacias hidrográficas, que normalmente fica entre 60 e 120 min para bacias consideradas pequenas, tem sido usado como tempo de duração na estimativa de chuvas intensas. Nesse intervalo, existem outros modelos que propiciam melhores ajustes e, conseqüentemente, maior confiabilidade na estimativa da chuva a ser usada nos dimensionamentos de estruturas de contenção. Assim, este trabalho teve como objetivo ajustar dois outros modelos para a estimativa de chuvas intensas: um exponencial e um linear, além do modelo básico. Esses modelos foram ajustados com base em dados de precipitação máxima diária anual da região de Lavras (MG), empregando-se dados de chuvas diárias do período de 1914 a 1991. Os dados foram transformados em intensidades de precipitação, com tempo de retorno variando de 2 a 100 anos e duração entre 5 e 1.440 min. Verificou-se que o modelo exponencial proposto proporcionou melhores ajustes, com menores erros na estimativa, para chuvas variando de 5 a 240 min, sendo, portanto, recomendável a bacias em que o tempo de concentração se enquadre nesta faixa de tempo; o modelo básico mostrou-se mais aplicável a bacias em que o tempo de duração seja maior que 240 min, enquanto o modelo linear não se mostrou confiável para a estimativa de chuvas intensas.

Characterization of a surface metalloprotease from Herpetomonas samuelpessoai and comparison with Leishmania major promastigote surface protease.

The monogenetic kinetoplastid protozoan parasite Herpetomonas samuelpessoai expresses a surface-exposed metalloprotease. Comparable to the Leishmania promastigote surface protease, or PSP, the protease of Herpetomonas is active at the surface of fixed and live organisms, and both enzymes display an identical cleavage specificity toward a nonapeptide substrate. The protease was enriched 440 times by partition into Triton X-114 followed by 2 steps of anion exchange chromatography. The 56-kDa enzyme is inhibited by the metal chelator 1,10-phenanthroline and is susceptible to cleavage by glycosyl-phosphatidylinositol phospholipase C (GPI-PLC). The conservation of an identical surface protease activity in these monogenetic and digenetic trypanosomatids suggests that the enzyme has a physiological function in the promastigote (insect) stage of these parasites.

"V.N. Volochinov en contexte: essai d'épistémologie historique"

Cette thèse de doctorat porte sur la pensée de Valentin Volochinov (1895-1936) et le contexte intellectuel russe du début du XXe siècle dans lequel elle a été élaborée. Le cadre spatial de l'étude est la Russie. Le cadre temporel correspond aux années 1890-1920. Fait dans le cadre des « études bakhtiniennes », ce travail propose une démarche inverse de celle utilisée jusqu'à présent dans ce domaine. Son objectif est d'explorer les conséquences pratiques de trois hypothèses : 1) Valentin Volochinov (et non pas Mikhaïl Bakhtine) est l'auteur des textes parus sous son nom dans les années 1920 ; 2) Valentin Volochinov est un chercheur indépendant de Mikhaïl Bakhtine et de Pavel Medvedev (et non pas seulement un des membres du « Cercle de Bakhtine » ou du « groupe B.M.V. » dont le projet scientifique serait incompréhensible sans le recours aux textes bakhtiniens et/ou de Medvedev) ; 3) la connaissance du contexte intellectuel général dans lequel a travaillé Valentin Volochinov (c'est-à-dire l'ensemble des textes et des discussions scientifiques qui se sont déroulées dans les revues et les institutions scientifiques autour des thèmes abordés dans les textes signés dans les années 1920 par Volochinov) joue un rôle de premier plan dans l'interprétation de sa conception. L'analyse de la terminologie utilisée dans les travaux de Volochinov (en particulier de la notion d'« idéologie » et de méthode « marxiste »), ainsi que l'examen des idées ayant trait à la philosophie du langage (la réception des idées de Saussure, la polémique avec Rozalija Chor sur des principes de la science du langage « marxiste », la critique de la conception du «mot» de Gustav Chpet), psychologiques (la critique de la théorie psychanalytique de Sigmund Freud, l'élaboration de la notion de conscience, la recherche des bases de la psychologie « marxiste ») et sociologiques (l'analyse de l'interaction socio-verbale et l'élaboration de la théorie de l'énoncé) amènent à la conclusion que les hypothèses avancées sont justes et le mode de lecture adopté dans le travail est rentable : il suscite des interprétations différentes de celles proposées jusqu'à présent. Il permet, par exemple, de mettre en évidence les particularités du marxisme russe des années 1920 considéré par les intellectuels de l'époque, d'une part, comme une méthode des recherches dont les principes fondamentaux sont le matérialisme, le monisme, le déterminisme (y compris social), la dialectique et, d'autre part, comme une doctrine sociologique. Compris en ce sens, le marxisme fait partie de l'histoire de la sociologie russe qui comprend également des conceptions dites « bourgeoises » ou « positivistes » comme, par exemple, celle d'Eugène de Roberty, qui insiste dans ses travaux sur le primat du social sur l'individuel, autrement dit qui met en avant le principe du déterminisme social souvent associé uniquement au «sociologisme marxisant». L'oeuvre de Volochinov ne contient pas, par conséquent, d'éléments de «sociologisme vulgaire», elle s'inscrit dans l'histoire des idées sociologiques russes où il n'y a pas de rupture nette entre les conceptions dites «bourgeoises» et marxistes. Le marxisme de Volochinov n'est pas révolutionnaire. Il ne peut pas non plus être associé aux idées psychanalytiques. La preuve est le refus radical de l'existence de l'inconscient (ou plutôt d'une force inconsciente) qui déterminerait le comportement des individus sans qu'ils s'en rendent compte. Le projet scientifique de Volochinov consiste à analyser la conscience (les faits psychiques), ainsi que le langage, l'énoncé et les structures syntaxiques dans lesquelles l'énoncé se réalise en tant qu'éléments constitutifs de l'échange social et/ou verbal, qui se trouve au centre de vives discussions menées à la charnière des XIXe-XXe siècles par les chercheurs russes d'orientation marxiste et non marxiste. Pour comprendre ce projet il n'est pas nécessaire de faire appel aux idées de Bakhtine et de Medvedev : la lecture en contexte des textes signés dans les années 1920 par Volochinov met ainsi en doute l'idée qui domine actuellement dans le monde francophone que Bakhtine serait leur véritable auteur.

Colites microscopiques--quoi de neuf ? [Microscopic colitis: update 2014].

Microscopic colitis, which includes lymphocytic colitis and collagenous colitis, represents a frequent cause of chronic watery diarrhea especially in the elderly population. Several medications, such as nonsteroidal antiinflammatory drugs, proton pump inhibitors or antidepressants, as well as cigarette smoking have been recognized as risk factors for microscopic colitis. The diagnosis of microscopic colitis is based on a macroscopically normal ileo-colonoscopy and several biopsies from the entire colon, which demonstrate the pathognomonic histopathologic findings. Therapy is mainly based on the use of budesonide. Other medications, such as mesalazine, cholestyramine and bismuth, have been evaluated as well but the evidence is less solid.

Soil compaction and eucalyptus growth in response to forwarder traffic intensity and load

During timber exploitation in forest stands harvesting machines pass repeatedly along the same track and can cause soil compaction, which leads to soil erosion and restricted tree root growth. The level of soil compaction depends on the number of passes and weight of the wood load. This paper aimed to evaluate soil compaction and eucalyptus growth as affected by the number of passes and wood load of a forwarder. The study was carried out in Santa Maria de Itabira county, Minas Gerais State - Brazil, on a seven-year-old eucalyptus stand planted on an Oxisol. The trees were felled by chainsaw and manually removed. Plots of 144 m² (four rows 12 m long in a 3 x 2 m spacing) were then marked off for the conduction of two trials. The first tested the traffic intensity of a forwarder which weighed 11,900 kg and carried 12 m³ wood (density of 480 kg m-3) and passed 2, 4, and 8 times along the same track. In the second trial, the forwarder carried loads of 4, 8, and 12 m³ of wood, and the machine was driven four times along the same track. In each plot, the passes affected four rows. Eucalyptus was planted in 30 x 30 x 30 cm holes on the compacted tracks. The soil in the area is clayey (470 clay and 440 g kg-1 sand content) and at depths of 0-5 cm and 5-10 cm, respectively, soil organic carbon was 406 and 272 g kg-1 and the moisture content during the trial 248 and 249 g kg-1. These layers were assessed for soil bulk density and water-stable aggregates. The infiltration rate was measured by a cylinder infiltrometer. After 441 days the measurements were repeated, with additional analyses of: soil organic carbon, total nitrogen, N-NH4+, N-NO3-, porosity, and penetration resistance. Tree height, stem diameter, and stem dry matter were measured. Forwarder traffic increased soil compaction, resistance to penetration and microporosity while it reduced the geometric mean diameter, total porosity, macroporosity and infiltration rate. Stem dry matter yield and tree height were not affected by soil compaction. Two passes of the forwarder were enough to cause the disturbances at the highest levels. The compaction effects were still persistent 441 days after forwarder traffic.

Nouveaux traitements de l'hépatite C: aspects pharmacologiques et potentiel d'interaction [New hepatitis C treatments: pharmacological considerations and potential for drug interactions].

Progress in the understanding of the hepatitis C virus life cycle allowed the development of new, very promising antiviral therapies. Although these new drugs have a favourable profile in terms of efficacy, tolerance and interaction potential, their prescription in the setting of comedication and impaired renal or hepatic function remains a challenge. Here, we provide a summary of pharmacological considerations, focusing on sofosbuvir, simeprevir and daclatasvir. A better understanding of their metabolic pathways and transporters may help the prescriber to identify and manage drug interactions especially in patients under immunosuppressive or anti-HIV therapy. Recommendations for the prescription of these drugs in specific situations are also discussed.

DSM-IV and DSM-5 alcohol use disorder among young Swiss men.

BACKGROUND AND AIMS: Previous studies suggest that the new DSM-5 criteria for alcohol use disorder (AUD) will increase the apparent prevalence of AUD. This study estimates the 12-month prevalence of AUD using both DSM-IV and DSM-5 criteria and compares the characteristics of men in a high risk sample who meet both, only one and neither sets of diagnostic criteria. DESIGN, SETTING AND PARTICIPANTS: 5943 Swiss men aged 18-25 years who participated in the Cohort Study on Substance Use Risk Factors (C-SURF), a population-based cohort study recruited from three of the six military recruitment centres in Switzerland (response rate = 79.2%). MEASUREMENTS: DSM-IV and DSM-5 criteria, alcohol use patterns, and other substance use were assessed. FINDINGS: Approximately 31.7% (30.5-32.8) of individuals met DSM-5 AUD criteria [21.2% mild (20.1-22.2); 10.5% moderate/severe (9.7-11.3)], which was less than the total rate when DSM-IV criteria for alcohol abuse (AA) and alcohol dependence (AD) were combined [36.8% overall (35.5-37.9); 26.6% AA (25.4-27.7); 10.2% AD (9.4-10.9)]. Of 2479 respondents meeting criteria for either diagnoses, 1585 (63.9%) met criteria for both. For those meeting DSM-IV criteria only (n = 598, 24.1%), hazardous use was most prevalent, whereas the criteria larger/longer use than intended and tolerance to alcohol were most prevalent for respondents meeting DSM-5 criteria only (n = 296, 11.9%). Two in five DSM-IV alcohol abuse cases and one-third of DSM-5 mild AUD individuals fulfilled the diagnostic criteria due to the hazardous use criterion. The addition of the craving and excluding of legal criterion, respectively, did not affect estimated AUD prevalence. CONCLUSIONS: In a high-risk sample of young Swiss males, prevalence of alcohol use disorder as diagnosed by DSM-5 was slightly lower than prevalence of DSM-IV diagnosis of dependence plus abuse; 63.9% of those who met either criterion met criteria for both.

Compactação em um latossolo vermelho distroférrico e suas relações com o crescimento radicular do milho

A compactação dos solos agrícolas, em decorrência da intensificação da agricultura com elevado tráfego de máquinas, vem se tornando, nos últimos anos, fator limitante ao crescimento e desenvolvimento das plantas. Assim, o objetivo deste trabalho foi avaliar, em um Latossolo Vermelho distroférrico muito argiloso, cultivado em sistema plantio direto, a influência da compactação induzida pelo tráfego de um trator agrícola MF 292 (105 cv), com massa total de 5 Mg e com pressão de inflação de 96 kPa nos pneus dianteiros (14.9-24 R1) e 110 kPa nos pneus traseiros (18.4-34 R1), sobre a densidade, porosidade, resistência do solo à penetração e estabilidade de agregados, bem como as consequências sobre o crescimento radicular da cultura do milho. O estudo foi realizado na Fazenda Experimental de Ciências Agrárias da UFGD, no município de Dourados, MS. O delineamento experimental utilizado foi de blocos casualizados, com cinco repetições. Os tratamentos foram constituídos por estados induzidos de compactação, sendo: PD - condição atual que reflete o histórico de oito anos de plantio direto; e plantio direto com compactação adicional por tráfego de trator em uma (PDc1), duas (PDc2), quatro (PDc4) e seis passadas (PDc6). A microporosidade do solo não foi alterada pela compactação adicional. Analisando o sistema radicular do milho, foram observadas reduções nos valores de diâmetro, comprimento e superfície radicular, ocorrendo decréscimo de 85 % no comprimento radicular, comparando o PD com o PDc6. O aumento da compactação do solo induzida pelo tráfego de trator a partir de duas passadas (220 kPa) promoveu aumento da Ds e redução da Macro e Pt, e a partir de quatro passadas (440 kPa) promoveu aumento da RP de maneira efetiva, até 0,10 m de profundidade. A macroporosidade do solo é um bom indicador da sua qualidade para avaliações de comprimento e superfície radicular.

Variação na resistência tênsil de agregados em função do conteúdo de carbono em dois solos na região dos Campos Gerais

O comportamento em macroescala do solo depende das propriedades mecânicas de agregados individuais. A resistência tênsil (RT) de agregados do solo é uma das propriedades mecânicas mais úteis e utilizadas como indicadora do impacto do manejo na qualidade do solo. O objetivo deste trabalho foi avaliar o comportamento da RT em relação ao conteúdo do C orgânico total (COT) em dois solos (Latossolo Vermelho distrófico típico) com classes texturais diferentes, em sistema plantio direto de longa duração. O delineamento experimental utilizado foi fatorial 2 x 2 x 2 inteiramente casualizado, com 12 tratamentos. Os fatores analisados foram: (a) dois solos: Latossolo Vermelho distrófico típico classe textural franco-argiloarenosa e Latossolo Vermelho distrófico típico classe textural franco-argilosa; (b) profundidades de amostragem: 0-5 e 5-20 cm; e (c) épocas de amostragem (E1-outubro de 2007; E2-setembro de 2008). Para determinação da resistência tênsil, foram coletados 1.440 blocos de solo. A RT e o conteúdo de COT foram mensurados em 1.920 agregados para cada época de amostragem. A RT reduziu à medida que o conteúdo de COT aumentou e com maior impacto no LV classe textural franco-argilosa, ou seja, o conteúdo de argila influenciou o comportamento da RT, que respondeu inversamente proporcional ao conteúdo de argila. O impacto do conteúdo de COT na RT foi mais importante na camada superficial do solo de 0-5 cm do que na de 5-20 cm.

Sinergismo Bacillus, Brevibacillus e, ou, Paenibacillus na simbiose Bradyrhizobium-caupi

O feijão-caupi Vigna unguiculata [L.] Walp. é a principal cultura de subsistência do semiárido brasileiro, sendo fonte de proteínas de baixo custo, notadamente, para populações carentes. A produção dessa cultura no Nordeste é baixa devido à não utilização de insumos agrícolas - entre eles, o fertilizante nitrogenado. Por outro lado, bactérias promotoras de crescimento em plantas (BPCPs) vêm sendo estudadas, de forma a maximizar a fixação de N2, disponibilizar nutrientes como P ou fito-hormônios e inibir doenças. Os objetivos deste trabalho foram verificar a viabilidade da coinoculação das sementes de feijão-caupi usando Paenibacillus, Brevibacillus e, ou, Bacillus e Bradyrhizobium-caupi; caracterizar as estirpes quanto à produção de ácido indol acético (AIA) e solubilização de fosfato; e avaliar o sinergismo entre os microrganismos como alternativa para otimizar a FBN. Os experimentos foram conduzidos em laboratório e em casa de vegetação do Instituto Agronômico de Pernambuco (IPA), utilizando o feijão-caupi cv. "IPA - 206". As estirpes utilizadas foram: Bacillus sp. - 449, 450, 451, 461 e ANBE 31; B. cereus - 440; B. subtilis - 438, 441, 454, 455 e 459; B. pumilus - 444, 445 e 448; B. megaterium - 462; Brevibacillus brevis - 447; Paenibacillus brasilensis - 24, 172 e 177; P. graminis - MC 04.21, MC 22.13 e BR 60106; P. polymyxa - S21; e P. durus - RBN4. Os microrganismos não apresentaram capacidade para produzir AIA nem solubilizar fosfato. Ocorreu sinergismo das estirpes de Bacillus sp. (449) e Bacillus pumilus (444) coinoculadas com a estirpe de Bradyrhizobium sp. (BR 3267) no feijão-caupi.

Kinetics of phosphorus sorption in soils in the state of Paraíba¹

The soil P sorption capacity has been studied for many years, but little attention has been paid to the rate of this process, which is relevant in the planning of phosphate fertilization. The purpose of this experiment was to assess kinetics of P sorption in 12 representative soil profiles of the State of Paraíba (Brazil), select the best data fitting among four equations and relate these coefficients to the soil properties. Samples of 12 soils with wide diversity of physical, chemical and mineralogical properties were agitated in a horizontal shaker, with 10 mmo L-1 CaCl2 solution containing 6 and 60 mg L-1 P, for periods of 5, 15, 30, 45, 60, 90, 120, 420, 720, 1,020, and 1,440 min. After each shaking period, the P concentration in the equilibrium solution was measured and three equations were fitted based on the Freundlich equation and one based on the Elovich equation, to determine which soil had the highest sorption rate (kinetics) and which soil properties correlated to this rate. The kinetics of P sorption in soils with high maximum P adsorption capacity (MPAC) was fast for 30 min at the lower initial P concentration (6 mg L-1). No difference was observed between soils at the higher initial P concentration (60 mg L-1). The P adsorption kinetics were positively correlated with clay content, MPAC and the amount of Al extracted with dithionite-citrate-bicarbonate. The data fitted well to Freundlich-based equations equation, whose coefficients can be used to predict P adsorption rates in soils.