3D geoelectrical monitoring to follow hydric soil behaviour during rainfall

RESUME Durant les dernières années, les méthodes électriques ont souvent été utilisées pour l'investigation des structures de subsurface. L'imagerie électrique (Electrical Resistivity Tomography, ERT) est une technique de prospection non-invasive et spatialement intégrée. La méthode ERT a subi des améliorations significatives avec le développement de nouveaux algorithmes d'inversion et le perfectionnement des techniques d'acquisition. La technologie multicanale et les ordinateurs de dernière génération permettent la collecte et le traitement de données en quelques heures. Les domaines d'application sont nombreux et divers: géologie et hydrogéologie, génie civil et géotechnique, archéologie et études environnementales. En particulier, les méthodes électriques sont souvent employées dans l'étude hydrologique de la zone vadose. Le but de ce travail est le développement d'un système de monitorage 3D automatique, non- invasif, fiable, peu coûteux, basé sur une technique multicanale et approprié pour suivre les variations de résistivité électrique dans le sous-sol lors d'événements pluvieux. En raison des limitations techniques et afin d'éviter toute perturbation physique dans la subsurface, ce dispositif de mesure emploie une installation non-conventionnelle, où toutes les électrodes de courant sont placées au bord de la zone d'étude. Le dispositif le plus approprié pour suivre les variations verticales et latérales de la résistivité électrique à partir d'une installation permanente a été choisi à l'aide de modélisations numériques. Les résultats démontrent que le dispositif pôle-dipôle offre une meilleure résolution que le dispositif pôle-pôle et plus apte à détecter les variations latérales et verticales de la résistivité électrique, et cela malgré la configuration non-conventionnelle des électrodes. Pour tester l'efficacité du système proposé, des données de terrain ont été collectées sur un site d'étude expérimental. La technique de monitorage utilisée permet de suivre le processus d'infiltration 3D pendant des événements pluvieux. Une bonne corrélation est observée entre les résultats de modélisation numérique et les données de terrain, confirmant par ailleurs que le dispositif pôle-dipôle offre une meilleure résolution que le dispositif pôle-pôle. La nouvelle technique de monitorage 3D de résistivité électrique permet de caractériser les zones d'écoulement préférentiel et de caractériser le rôle de la lithologie et de la pédologie de manière quantitative dans les processus hydrologiques responsables d'écoulement de crue. ABSTRACT During the last years, electrical methods were often used for the investigation of subsurface structures. Electrical resistivity tomography (ERT) has been reported to be a useful non-invasive and spatially integrative prospecting technique. The ERT method provides significant improvements, with the developments of new inversion algorithms, and the increasing efficiency of data collection techniques. Multichannel technology and powerful computers allow collecting and processing resistivity data within few hours. Application domains are numerous and varied: geology and hydrogeology, civil engineering and geotechnics, archaeology and environmental studies. In particular, electrical methods are commonly used in hydrological studies of the vadose zone. The aim of this study was to develop a multichannel, automatic, non-invasive, reliable and inexpensive 3D monitoring system designed to follow electrical resistivity variations in soil during rainfall. Because of technical limitations and in order to not disturb the subsurface, the proposed measurement device uses a non-conventional electrode set-up, where all the current electrodes are located near the edges of the survey grid. Using numerical modelling, the most appropriate arrays were selected to detect vertical and lateral variations of the electrical resistivity in the framework of a permanent surveying installation system. The results show that a pole-dipole array has a better resolution than a pole-pole array and can successfully follow vertical and lateral resistivity variations despite the non-conventional electrode configuration used. Field data are then collected at a test site to assess the efficiency of the proposed monitoring technique. The system allows following the 3D infiltration processes during a rainfall event. A good correlation between the results of numerical modelling and field data results can be observed since the field pole-dipole data give a better resolution image than the pole-pole data. The new device and technique makes it possible to better characterize the zones of preferential flow and to quantify the role of lithology and pedology in flood- generating hydrological processes.

Derivation of soil-specific streaming potential electrical parameters from hydrodynamic characteristics of partially saturated soils

Water movement in unsaturated soils gives rise to measurable electrical potential differences that are related to the flow direction and volumetric fluxes, as well as to the soil properties themselves. Laboratory and field data suggest that these so-called streaming potentials may be several orders of magnitudes larger than theoretical predictions that only consider the influence of the relative permeability and electrical conductivity on the self potential (SP) data. Recent work has improved predictions somewhat by considering how the volumetric excess charge in the pore space scales with the inverse of water saturation. We present a new theoretical approach that uses the flux-averaged excess charge, not the volumetric excess charge, to predict streaming potentials. We present relationships for how this effective excess charge varies with water saturation for typical soil properties using either the water retention or the relative permeability function. We find large differences between soil types and the predictions based on the relative permeability function display the best agreement with field data. The new relationships better explain laboratory data than previous work and allow us to predict the recorded magnitudes of the streaming potentials following a rainfall event in sandy loam, whereas previous models predict values that are three orders of magnitude too small. We suggest that the strong signals in unsaturated media can be used to gain information about fluxes (including very small ones related to film flow), but also to constrain the relative permeability function, the water retention curve, and the relative electrical conductivity function.

Pseudocapillaria (Ichthyocapillaria) maricaensis n. sp. (Nematoda, Capillariidae) and remarks on the helminthological fauna of Liolaemus lutzae Mertens, 1938 (Lacertilia, Iguanidae)

Pseudocapillaria (Ichthyicapillaria) maricaensis n. sp. is described from the small intestine of the lizard, Liolaemus lutzae Meterns, 1938, collected in the State of Rio de Janeiro Brazil. The author compares the new species with Capillaria crotaliRudolphi, 1819) Travassos, 1915, Capillaria freitaslenti Araujo & Gandra, 1941, Pseudocapillaria (Pseudocapillaria) amarali (Freitas & Lent, 1934) Moravec, 1952, Pseudocapillaria (Pseudocapillaria) cezarpintoi (Freitas & Lent, 1934)Moravec, 1952 and Pseudocapillaria (Ichthyocapillaria) murinae (travassos, 1914) Moravec, 1952 previously reported from lizards in Brazil. The nematode Thelandros sceleratus Travassos, 1923 and the trematode paradistomum parvissimum (Travassos, 1918) Travassos, 1919 are for the first time reported from this same host.

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil.

A Gram-negative, rod-shaped, aerobic bacterium, designated strain RP007(T), was isolated from a polycyclic aromatic hydrocarbon-contaminated soil in New Zealand. Two additional strains were recovered from a compost heap in Belgium (LMG 18808) and from the rhizosphere of maize in the Netherlands (LMG 24204). The three strains had virtually identical 16S rRNA gene sequences and whole-cell protein profiles, and they were identified as members of the genus Burkholderia, with Burkholderia phenazinium as their closest relative. Strain RP007(T) had a DNA G+C content of 63.5 mol% and could be distinguished from B. phenazinium based on a range of biochemical characteristics. Strain RP007(T) showed levels of DNA-DNA relatedness towards the type strain of B. phenazinium and those of other recognized Burkholderia species of less than 30 %. The results of 16S rRNA gene sequence analysis, DNA-DNA hybridization experiments and physiological and biochemical tests allowed the differentiation of strain RP007(T) from all recognized species of the genus Burkholderia. Strains RP007(T), LMG 18808 and LMG 24204 are therefore considered to represent a single novel species of the genus Burkholderia, for which the name Burkholderia sartisoli sp. nov. is proposed. The type strain is RP007(T) (=LMG 24000(T) =CCUG 53604(T) =ICMP 13529(T)).

Association of hemolytic activity of Pseudomonas entomophila, a versatile soil bacterium, with cyclic lipopeptide production.

Pseudomonas entomophila is an entomopathogenic bacterium that is able to infect and kill Drosophila melanogaster upon ingestion. Its genome sequence suggests that it is a versatile soil bacterium closely related to Pseudomonas putida. The GacS/GacA two-component system plays a key role in P. entomophila pathogenicity, controlling many putative virulence factors and AprA, a secreted protease important to escape the fly immune response. P. entomophila secretes a strong diffusible hemolytic activity. Here, we showed that this activity is linked to the production of a new cyclic lipopeptide containing 14 amino acids and a 3-C(10)OH fatty acid that we called entolysin. Three nonribosomal peptide synthetases (EtlA, EtlB, EtlC) were identified as responsible for entolysin biosynthesis. Two additional components (EtlR, MacAB) are necessary for its production and secretion. The P. entomophila GacS/GacA two-component system regulates entolysin production, and we demonstrated that its functioning requires two small RNAs and two RsmA-like proteins. Finally, entolysin is required for swarming motility, as described for other lipopeptides, but it does not participate in the virulence of P. entomophila for Drosophila. While investigating the physiological role of entolysin, we also uncovered new phenotypes associated with P. entomophila, including strong biocontrol abilities.

Studies on the sandfly fauna of Samuel Ecological Station, Porto Velho Municipality, Rondônia State, Brazil

In a study of sandfly species in the Samuel Ecological Station, in Porto Velho, Rondônia State, the following species were identified: Lutzomyia brasiliensis, L. evangelistai, L. gomezi, L. anduzei, L. flaviscutellata, L. richardwardi, L. shawi, L. umbratilis, L. yuilli yuilli, L. dendrophyla, L. puctigeniculata, L. shannoni, L. amazonensis, L. ayrozai, L. carrerai carrerai, L. claustrei, L. davisi and L. lainsoni. L. richardwardi, L. umbratilis and L. c. carrerai were the predominant species captured of man forming 60.30% of the total catch. L. richarwardi was the most frequent at ground level (29.9%), while L. umbratilis predominated in the canopy (48.5%).

The sand fly fauna (Diptera: Psychodidae: Phlebotominae) of a focus of cutaneous leishmaniasis in Ilhéus, state of Bahia, Brazil

The municipality of Ilhéus, State of Bahia, has a focus of cutaneous leishmaniasis where entomological studies were carried out to determine the sand fly species and their habits. Lutzomyia migonei, L. sallesi, L. tupynambai, L. schreiberi, L. intermedia, L. whitmani, L. yuilli yuilli, L. fischeri, L. pessoai, L. shannoni and L. misionensis were identified. Lutzomyia whitmani was the predominant species. Specimens were collected indoors, at peridomestic sites, in the cocoa plantations and in other types of collections. Females fed readily on humans and were attracted to domestic animals. Our evidence suggests that L. whitmani is a probable vector.

Notes on the Sand Fly Fauna (Diptera:Psychodidae) in the State of Rio Grande do Sul, Brazil

The authors report the catching of 13 different species at the Aparados da Serra National Park and at the Turvo State Park in the municipalities of Cambará do Sul and Tenente Portela, respectively, both in the State of Rio Grande do Sul, where those species were practically unknown

Estudi de la flora i la fauna d'una zona agroforestal del sud d'Osona

L’objectiu general de l’estudi és tenir un coneixement de les espècies de flora i fauna presents en una àrea agroforestal situada al sud de la comarca d’Osona. A nivell específic, s’ha laborat un llistat de les espècies de flora i fauna presents tan exhaustiu com ha estat possible, s’han caracteritzat les comunitats vegetals presents, s’ha avaluat la població d’algunes espècies de vertebrats presents, s’han identificat els punts d’interès per a la conservació de certes espècies i, finalment, s’han establert prioritats de conservació dins l’àrea d’estudi.

Fauna silvestre del Parc del Garraf. Afectacions al sector primari

El Parc del Garraf (PG) ha estat tradicionalment una important zona agrícola, encara que actualment és molt reduïda (representa el 3% del total de la superfície del parc) i està repartida entre unes poques masies. Aquesta activitat humana conviu amb la fauna silvestre de la zona, que en alimentar-se parcialment dels cultius (cereal, vinya, oliveres, arbres fruiters i hortalisses), hi causa diversos impactes. És el cas de diverses aus, com ara la garsa (Pica Pica) i el pardal (Passer domesticus), i també d’alguns mamífers com el porc senglar (Sus scrofa). Hem observat que l’impacte produït per les aus i el porc senglar (Sus scrofa) és molt petit, el que pot ser degut a dos motius principals: possiblement per una elevada producció de fruits salvatges, esdevenint aquest aliment suficient per a les aus; i la baixa densitat poblacional de porc senglar (Sus scrofa) al parc. Els impactes observats presenten una alta variabilitat i depenen de l’època de l’any en que ens trobem. Per tant, cal fer-ne un seguiment més acurat on s’impliquin administració i pagesos per a millorar el coneixement de l’impacte de la fauna salvatge.

Contribution to the sand fly fauna (Diptera: Phlebotominae) of Rio Grande do Sul, Brazil and Leishmania (Viannia) infections

American cutaneous leishmaniasis (ACL) is endemic in the State of Rio Grande do Sul, Brazil. As reports of nearby hospitals suggest, the Parque Estadual do Turvo seems to serve as a source for the disease. During three months from November 1996 to February 1997 we collected, in this park, 2,228 sandflies (10 Lutzomyia species and 2 6species). We applied the polymerase chain reaction to 920 females which belong to the following species: Lutzomyia migonei, Lu. pessoai, Lu. fischeri, Lu. misionensis, Lu. lanei, Lu. neivai, Lu. shannoni, and Lu. monticola, in an attempt to verify natural infection by Leishmania (Viannia), the causative agent of ACL. Le. (Viannia) infections were demonstrated by DNA amplification from two Lu. pessoai and one Lu. misionensis female. Lu. pessoai have been found with leptomonas in the gut believed to be Le. (V.) braziliensis in other endemic areas of northeastern and southeastern Brazil. However, Lu. misionensis has never been found carrying a natural infection of Le. (Viannia).

New species records for the blackfly (Diptera-Simuliidae) fauna of Argentina with description of adults, pupa and larva of Simulium oyapockense s. l. and S. seriatum

Two blackfly species Simulium (Cerqueirellum) oyapockense Floch & Abonnenc and S. (Hemicnetha) seriatum Knab are recorded from Argentina, representing the most southern register for both species. S. oyapockense is a species epidemiologically very important, as a vector of onchocerciasis in the Amazonian focus. Both species are described and illustrated and their distribution are reported, in similarity to others like S. roraimense Nunes de Mello and S. ganalesense Vargas et al. in reference to S. oyapockense and S. mexicanum Bellardi similar to S. seriatum are discussed.

Natural Arabidopsis brx loss-of-function alleles confer root adaptation to acidic soil.

Soil acidification is a major agricultural problem that negatively affects crop yield. Root systems counteract detrimental passive proton influx from acidic soil through increased proton pumping into the apoplast, which is presumably also required for cell elongation and stimulated by auxin. Here, we found an unexpected impact of extracellular pH on auxin activity and cell proliferation rate in the root meristem of two Arabidopsis mutants with impaired auxin perception, axr3 and brx. Surprisingly, neutral to slightly alkaline media rescued their severely reduced root (meristem) growth by stimulating auxin signaling, independent of auxin uptake. The finding that proton pumps are hyperactive in brx roots could explain this phenomenon and is consistent with more robust growth and increased fitness of brx mutants on overly acidic media or soil. Interestingly, the original brx allele was isolated from a natural stock center accession collected from acidic soil. Our discovery of a novel brx allele in accessions recently collected from another acidic sampling site demonstrates the existence of independently maintained brx loss-of-function alleles in nature and supports the notion that they are advantageous in acidic soil pH conditions, a finding that might be exploited for crop breeding.