Static detection of anomalies in transactional memory programs

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do Grau de Mestre em Engenharia Informática

Coordenação e fiscalização de obras de reabilitação urbana - acompanhamento de operações de reabilitação no Morro da Sé

O presente relatório descreve o trabalho desenvolvido durante os 6 meses de estágio curricular no âmbito do mestrado em construções. O estágio decorreu na Porto Vivo, SRU, uma empresa pública responsável pela dinamização social e económica do Centro Histórico do Porto – Património Mundial. Ao longo do estágio foram realizadas tarefas relacionadas com o tema Coordenação e Fiscalização de Obras, integrando a equipa do Núcleo de Execução de Obras (NEO), acompanhando as obras a decorrer no Centro Histórico do Porto, como por exemplo as Operações de Reabilitação e Realojamento no Morro da Sé. Procedeu-se também à realização de várias vistorias (segurança, salubridade e estética, determinação do nível de conservação e vistorias para efeitos de receção provisória de edifícios), embargo de obras e também o estudo do estado de conservação do edificado nas Áreas de Reabilitação Urbana (ARU) em Santos Pousada e Lapa. Desta forma, tornou-se possível reunir uma diversa quantidade de informação para a realização deste relatório, abordando assuntos importantes tais como as adversidades e anomalias observadas nas visitas às Operações de Reabilitação e Realojamento no Morro da Sé, como também a sugestão de um material estrutural alternativo, o Light Steel Framing.

Angiografia por Ressonância Magnética Tridimensional Optimizada por Contraste nas Doenças da Aorta

Objectivos: Avaliar a possibilidade de realizar angiografia de alta resolução com reconstrução tridimensional, com recurso a equipamento de ressonância magnética de 1 Tesla, em doentes com patologia aórtica. Métodos: Efectuaram-se trinta e um exames de ressonâncias magnética em dezassete doentes, após administração, sob a forma de bolus, de gadolinium. Foram adquiridas imagens em spin echo rápido, gradiente echo e angiografia com time-of-flight. Resultados: Todas as aquisições foram bem toleradas e conseguiu-se a opacificação do lumen aórtico, no momento apropriado, em todos os doentes. As sequências angiográficas foram obtidas com respiração suspensa que requereu cerca de 25 segundos por imagem e seis a oito minutos para conseguir uma reconstrução tridimensional. Conclusão: A angiografia aórtica por reconstrução tridimensional é possível com um equipamento de 1 Tesla, com imagens de elevada qualidade e resolução, obtidas em pouco minutos. É possível obter toda a informação facultada pela aquisição em spin echo, convencional ou acelerado, a partir da reconstrução das imagens tridimensionais, afastando assim a necessidade de aquisição, tão incómoda, das imagens spin echo, melhorar a rapidez e diminuir, portanto, o tempo de aquisição, o que se torna relevante em doentes com síndromes aórticos agudos.

Three-Dimensional Contrast-Enhanced Magnetic Resonance Pulmonary Angiography in the Study of Pulmonary Vascular Pathology

OBJECTIVES: To assess the feasibility of performing pulmonary angiography using MRI with contrast enhancement in patients with pulmonary vascular disease. METHODS: We present our experience in ten individuals, two controls and eight patients who underwent the exam after injection of a gadolinium-based contrast agent on a 1 Tesla MR scanner using a time-of-flight sequence and breath-holding during injection of contrast. RESULTS: Pathology in the main pulmonary artery and its major branches was detected easily while resolution at the segmental and subsegmental levels was inadequate. CONCLUSION: Contrast-enhanced magnetic resonance pulmonary angiography is feasible on a 1 Tesla MR scanner for the study of pathology of the main pulmonary artery and its major branches, like massive pulmonary embolism. However its ability to detect and define distal vessel pathology as found in chronic thromboembolic pulmonary hypertension and small pulmonary emboli is limited.

SHõWA: A Self-healing Framework for Web-based Applications

The complexity of systems is considered an obstacle to the progress of the IT industry. Autonomic computing is presented as the alternative to cope with the growing complexity. It is a holistic approach, in which the systems are able to configure, heal, optimize, and protect by themselves. Web-based applications are an example of systems where the complexity is high. The number of components, their interoperability, and workload variations are factors that may lead to performance failures or unavailability scenarios. The occurrence of these scenarios affects the revenue and reputation of businesses that rely on these types of applications. In this article, we present a self-healing framework for Web-based applications (SHõWA). SHõWA is composed by several modules, which monitor the application, analyze the data to detect and pinpoint anomalies, and execute recovery actions autonomously. The monitoring is done by a small aspect-oriented programming agent. This agent does not require changes to the application source code and includes adaptive and selective algorithms to regulate the level of monitoring. The anomalies are detected and pinpointed by means of statistical correlation. The data analysis detects changes in the server response time and analyzes if those changes are correlated with the workload or are due to a performance anomaly. In the presence of per- formance anomalies, the data analysis pinpoints the anomaly. Upon the pinpointing of anomalies, SHõWA executes a recovery procedure. We also present a study about the detection and localization of anomalies, the accuracy of the data analysis, and the performance impact induced by SHõWA. Two benchmarking applications, exercised through dynamic workloads, and different types of anomaly were considered in the study. The results reveal that (1) the capacity of SHõWA to detect and pinpoint anomalies while the number of end users affected is low; (2) SHõWA was able to detect anomalies without raising any false alarm; and (3) SHõWA does not induce a significant performance overhead (throughput was affected in less than 1%, and the response time delay was no more than 2 milliseconds).

Desenvolvimento de um fantoma cerebral para ressonância magnética

O controlo da qualidade em ressonância magnética (RM) passa pela realização de diversos testes ao equipamento e calibrações diárias, onde os fantomas desempenham um papel fundamental. Este trabalho teve como objetivo principal o desenvolvimento de um fantoma cerebral para um sistema de RM de intensidade 3.0 Tesla. Com base na literatura existente, escolheram-se como reagentes o cloreto de gadolínio (III) (GdCl3), a agarose, e o gelificante carragena, tendo sido ainda acrescentado o conservante químico azida de sódio (NaN3) de forma a inibir a degradação da solução. Realizaram-se vários testes com diferentes concentrações dos materiais selecionados até obter as misturas adequadas a suscetibilidade magnética das substâncias branca e cinzenta cerebrais. Os tempos de relaxação T1 das diversas substâncias desenvolvidas foram medidos, apresentando o fantoma final uns tempos de T1 de 702±10 ms, quando a concentração de GdCl3 foi de 100 µmol (substância branca) e 1179±23 ms quando a concentração foi de 15 µmol (substância cinzenta). Os valores de T1 do fantoma foram comparados estatisticamente com os tempos de relaxação conseguidos a partir de um cérebro humano, obtendo-se uma correlação de 0.867 com significância estatística. No intuito de demonstrar a aplicabilidade do fantoma, este foi sujeito a um protocolo de RM, do qual constaram as sequências habitualmente usadas no estudo cerebral. Como principais resultados constatou-se que, nas sequências ponderadas em T1, o fantoma apresenta uma forte associação positiva (rs > 0.700 p = 0.072) com o cérebro de referência, ainda que não sejam estatisticamente significativos. As sequências ponderadas em T2 demonstraram uma correlação positiva moderada e fraca, sendo a ponderação densidade protónica a única a apresentar uma associação negativa. Desta forma, o fantoma revelou-se um ótimo substituto do cérebro humano. Este trabalho culminou na criação de um modelo cerebral tridimensional onde foram individualizadas as regiões das substâncias branca e cinzenta, de forma a posteriormente serem preenchidas pelas correspondentes substâncias desenvolvidas, obtendo-se um fantoma cerebral antropomórfico.

A Rare Obstetric Outcome in Uterus Didelphys with Obstructed Hemivagina and Ipsilateral Renal Agenesis

Background: The unique clinical syndrome of uterus didelphys, obstructed hemivagina, and ipsilateral renal anomaly is very rare and can be quite difficult to recognize because of the enormous heterogeneity in its clinical presentation. There are few long-term reports of the reproductive performance of women with this syndrome following treatment, or about the location of subsequent pregnancies. Case: A case in which two spontaneous pregnancies occurred alternatively in both hemiuteri: one despite a previous ipsilateral large hematometra and hematocolpos and the other, 8 years after, simultaneously with contralateral hematometra and hematocolpos(because of vaginal restenosis), is reported. Drainage of hematocolpos was performed at 14 weeks of pregnancy with immediate pain relief. Results: Pregnancy proceeded without complications. Eight month after delivery, a vaginoplasty was performed by excising the longitudinal vaginal septum, and marsupializing the vaginal cuff. Conclusions: This case highlights the importance of a correct and early diagnosis of developmental anomalies of the urogenital tract, as well as how a conservative approach in a Mullerian anomaly with unilateral obstruction led to two successful pregnancies occurring alternatively in the unaffected and in the previously blocked side. This is additional information supporting that every effort should be made to preserve the obstructed uterus.

Zinc Therapy of Neurological Wilson's Disease in a Woman with Two Foetus with Agenesis of the Corpus Callosum

8A>C>86A G:EDGI: A patient diagnosed Wilson’s disease (WD) 22 years previously, successfully treated initially with zinc, developed neuropsychiatric disease after years of irregular therapy. Reassuming zinc therapy was successful. After a normal pregnancy, she had two therapeutic abortions for corpus callosum agenesis, and a missed abortion. We review the genetics, physiopathology, clinics and imagiologic response to zinc therapy, the problems of pregnancy in WD, advising to maintain therapy. A hypothetic cause for fetus brain anomaly would be hypocupremia due to zinc therapy, confronting with two other possibilities, one related to Wilson’s disease in itself, other due to a congenital syndrome of agenesis of the corpus callosum, impossible to diagnose by our available diagnostic methods.

Evaluation of thermal remote sensing for detection of thermal anomalies as earthquake precursors: a case study for Malatya-Pütürge-Doganyol (Turkey) Earthquake, July 13, 2003

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.

A Novel Autosomal Recessive GJA1 Missense Mutation Linked to Craniometaphyseal Dysplasia

Craniometaphyseal dysplasia (CMD) is a rare sclerosing skeletal disorder with progressive hyperostosis of craniofacial bones. CMD can be inherited in an autosomal dominant (AD) trait or occur after de novo mutations in the pyrophosphate transporter ANKH. Although the autosomal recessive (AR)form of CMD had been mapped to 6q21-22 the mutation has been elusive. In this study, we performed whole-exome sequencing for one subject with AR CMD and identified a novel missense mutation (c.716G>A, p.Arg239Gln) in the C-terminus of the gap junction protein alpha-1 (GJA1) coding for connexin 43 (Cx43). We confirmed this mutation in 6 individuals from 3 additional families. The homozygous mutation cosegregated only with affected family members. Connexin 43 is a major component of gap junctions in osteoblasts, osteocytes, osteoclasts and chondrocytes. Gap junctions are responsible for the diffusion of low molecular weight molecules between cells. Mutations in Cx43 cause several dominant and recessive disorders involving developmental abnormalities of bone such as dominant and recessive oculodentodigital dysplasia (ODDD; MIM #164200, 257850) and isolated syndactyly type III (MIM #186100), the characteristic digital anomaly in ODDD. However, characteristic ocular and dental features of ODDD as well as syndactyly are absent in patients with the recessive Arg239Gln Cx43 mutation. Bone remodeling mechanisms disrupted by this novel Cx43 mutation remain to be elucidated.

Atrial Septal Defects

Atrial septal defects are the third most common type of congenital heart disease. Included in this group of malformations are several types of atrial communications that allow shunting of blood between the systemic and the pulmonary circulations. Most children with isolated atrial septal defects are free of symptoms, but the rates of exercise intolerance, atrial tachyarrhythmias, right ventricular dysfunction, and pulmonary hypertension increase with advancing age and life expectancy is reduced in adults with untreated defects. The risk of development of pulmonary vascular disease, a potentially lethal complication, is higher in female patients and in older adults with untreated defects. Surgical closure is safe and effective and when done before age 25 years is associated with normal life expectancy. Transcatheter closure offers a less invasive alternative for patients with a secundum defect who fulfil anatomical and size criteria. In this Seminar we review the causes, anatomy, pathophysiology, treatment, and outcomes of atrial septal defects in children and adult patients in whom this defect is the primary cardiac anomaly.

Spatio-temporal analyses of the relationship between armed conflict and climate change in the eastern Africa

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.

Momentum risk: An approach following the correlations between active stocks

The momentum anomaly has been widely documented in the literature. However, there are still many issues where there is no consensus and puzzles left unexplained. One is that strategies based on momentum present a level of risk that is inconsistent with the diversification that it offers. Moreover, recent studies indicate that this risk is variable over time and mostly strategy-specific. This work project hypothesises and proves that this evidence is explained by the portfolio constitution of the momentum strategy over time, namely the covariance and correlation between companies in the top and down deciles and across them.

Noonan syndrome: a clinical and genetic study of 31 patients

Noonan syndrome is a multiple congenital anomaly syndrome, inherited in an autosomal dominant pattern. We studied 31 patients (18 males and 13 females) affected by this disorder regarding their clinical and genetic characteristics. The most frequent clinical findings were short stature (71%); craniofacial dysmorphisms, especially hypertelorism, ptosis, downslanting of the palpebral fissures; short or webbed neck (87%); cardiac anomalies (65%), and fetal pads in fingers and toes (70%). After studying the probands' first-degree relatives, we made the diagnosis of Noonan syndrome in more than one family member in three families. Therefore, the majority of our cases were sporadic.

Hematological findings in Noonan syndrome

OBJECTIVE: Noonan syndrome is a multiple congenital anomaly syndrome, and bleeding diathesis is considered part of the clinical findings. The purpose of this study was to determine the frequency of hemostatic abnormalities in a group of Noonan syndrome patients. METHOD: We studied 30 patients with clinical diagnosis of Noonan syndrome regarding their hemostatic status consisting of bleeding time, prothrombin time, activated partial thromboplastin time and thrombin time tests, a platelet count, and a quantitative determination of factor XI. RESULTS: An abnormal laboratory result was observed in 9 patients (30%). Although coagulation-factor deficiencies, especially factor XI deficiency, were the most common hematological findings, we also observed abnormalities of platelet count and function in our screening. CONCLUSIONS: Hemostatic abnormalities are found with some frequency in Noonan syndrome patients (30% in our sample). Therefore, we emphasize the importance of a more extensive hematological investigation in these patients, especially prior to an invasive procedure, which is required with some frequency in this disorder.