Bacterial diversity of soil under eucalyptus assessed by 16S rDNA sequencing analysis

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

An analysis of the floristic composition and diversity of Amazonian forests including those of the Guiana Shield

A large number of newly published and unpublished hectare plots in Amazonia and the Guiana Shield area allow an analysis of family composition and testing of hypotheses concerning alpha-diversity in the south American rain forest. Using data from 94 plots the family-level floristic patterns in wet tropical South America are described. To test diversity patterns, 268 plots are used in this large area. Contrary to a widely held belief, western Amazonian plots are not necessarily the most diverse. Several central Amazonian plots have equal or even higher tree diversity. Annual rainfall is not a good estimator for tree diversity in the Amazonia area and Guiana shield. Plots in the Guiana Shield area (and eastern Amazonia) usually have lower diversity than those in central or western Amazonia. It is argued that this is not because of low rainfall or low nutrient status of the soil but because of the small area of the relatively isolated rain forest area in eastern Amazonia and the Guiana Shield. The low diversity on nutrient-poor white sand soils in the Amazon basin is not necessarily due to their Low nutrient status but is, at least partly, caused by their small extent and fragmented nature.

Systematic consideration of petiole anatomy of species of Echinodorus Richard (Alismataceae) from north-eastern Brazil

Petiole anatomy of the north-eastern Brazilian species Echinodorus glandulosus, E. palaefolius, E. pubescens, E subalatus, E lanceolatus and E paniculatus were examined. All species had petioles with an epidermis composed of tabular cells with thin walls. The chlorenchyma just below the epidermis alternates with collateral vascular bundles. The interior of the petiole is filled by aerenchyma with ample open spaces or lacunas. The lacunas are bridged at intervals by plates, or by diaphragm-like linkages. There are lactiferous ducts and groups of fibres throughout the entire length of the petiole, but more frequently in the chlorenchyma. Important taxonomic characteristics for the genus Echinodorus include the shape and outline of the petiole in transversal section, the presence of winged extensions, and the number of vascular bundle arcs. Exceptions occur in E. lanceolatus and E. paniculatus, whose petioles have similar anatomic patterns. A comparative chart of the petiole anatomic characteristics analyzed is presented. (c) 2007 Elsevier GmbH. All rights reserved.

Anatomy of the frontal gland and ultramorphology of the frontal tube in the soldier caste of species of Nasutitermitinae (Isoptera, Termitidae)

is a predominant characteristic, conditioned by the presence of castes with different morphology, ontogeny, and development. The soldier caste is unique among social insects and it is responsible for colony defense. Soldiers belonging to the Nasutitermitinae subfamily are very peculiar, since they may be polymorphic and present a nasus in addition to either developed or vestigial mandibles. The defensive secretions of soldiers of the neotropical Nasutitermitinae have been the aim of several chemical studies, but few data exist concerning the anatomy and histology of the exocrine glands. This article presents a comparative study on the anatomy of the frontal gland of soldiers of several Nasutitermitinae species: Syntermes dirus (Burmeister), Syntermes nanus (Constantino), Constrictotermes cyphergaster (Silvestri), Nasutitermes corniger (Motschulsky) and Velocitermes heteropterus (Silvestri), with emphasis on the ultramorphology and ultrastructure of the frontal tube.

Esterase patterns and phylogenetic relationships of species and strains included in the Drosophila buzzatii cluster

Ten strains of two species in the Drosophila buzzatii cluster (D. serido and D. seriema) were examined as to esterase patterns using polyacrylamide gel electrophoresis. The migration rate of esterases, and their substrate specificity to alpha and beta naphthyl acetates, were analysed. Other esterase features such as inhibition behaviour, presence in males and females and location in the head, thorax or abdomen of flies, were also examined. The present data,together with results obtained by others for eight strains of D. koepferae, D. serido, D. seriema and D. buzzatii, show that 69 bands have been detected in the eighteen strains studied. This total number of bands was used for comparison of strains and species by similarity index, analysis of dependence and cluster analysis. The comparisons confirmed the existence of a high degree of similarity among D. seriema strains and among D. koepferae strains, but indicated differentiation among the D. serido strains. Two strains (D69R2 and D69R5) which differed from the others of the latter species, showed closer affinities with D. buzzatii, which indicates the need for further work on those strains classified as D. serido.

Evaluation of the genetic diversity of Xylella fastidiosa strains from citrus and coffee hosts by single-nucleotide polymorphism markers

The aim of this study was to obtain information about genetic diversity and make some inferences about the relationship of 27 strains of Xylella fastidiosa from different hosts and distinct geographical areas. Single-nucleotide polymorphism (SNP) molecular markers were identified in DNA sequences from 16 distinct regions of the genome of 24 strains of X. fastidiosa from coffee and citrus plants. Among the Brazilian strains, coffee-dependent strains have a greater number of SNPs (10 to 24 SNPs) than the citrus-based strains (2 to 12 SNPs); all the strains were compared with the sequenced strain 9a5c. The identified SNP markers were able to distinguish, for the first time, strains from citrus plants and coffee and showed that strains from coffee present higher genetic diversity than the others. These markers also have proven to be efficient for discriminating strains from the same host obtained from different geographic regions. X. fastidiosa, the causal agent of citrus variegated chlorosis, possesses genetic diversity, and the SNP markers were highly efficient for discriminating genetically close organisms.

An evaluation of the genetic diversity of Xylella fastidiosa isolated from diseased citrus and coffee in São Paulo, Brazil

Strains of Xylella fastidiosa, isolated from sweet orange trees (Citrus sinensis) and coffee trees (Coffea arabica) with symptoms of citrus variegated chlorosis and Requeima do Cafe, respectively, were indistinguish able based on repetitive extragenic palindromic polymerase chain reaction (PCR) and enterobacterial repetitive intergenic consensus PCR assays. These strains were also indistinguishable with a previously described PCR assay that distinguished the citrus strains from all other strains of Xylella fastidiosa. Because we were not able to document any genomic diversity in our collection of Xylella fastidiosa strains isolated from diseased citrus, the observed gradient of increasing disease severity from southern to northern regions of São Paulo State is unlikely due to the presence of significantly different strains of the pathogen in the different regions. When comparisons were made to reference strains of Xylella fastidiosa isolated from other hosts using these methods, four groups were consistently identified consistent with the hosts and regions from which the strains originated: citrus and coffee, grapevine and almond, mulberry, and elm, plum, and oak. Independent results from random amplified polymorphic DNA (RAPD) PCR assays were also consistent with these results; however, two of the primers tested in RAPD-PCR were able to distinguish the coffee and citrus strains. Sequence comparisons of a PCR product amplified from all strains of Xylella fastidiosa confirmed the presence of a CfoI polymorphism that can be used to distinguish the citrus strains from all others. The ability to distinguish Xylella fastidiosa strains from citrus and coffee with a PCR-based assay will be useful in epidemiological and etiological studies of this pathogen.

Roots, leaves and scapes anatomy of species of Paepalanthus subgenus Platycaulon (Eriocaulaceae)

The anatomical features of roots, leaves and scapes of the subgenus Platycaulon, genus Paepalanthus (Eriocaulaceae) that grow in the Brasilian rupestrian fields of Serra do Cipo - MG - Brazil were studied. The following main anatomical features were found: epidermis cells of varied thicknesses, chlorenchyma with compact or spread organization and leaf margin shape in the leaves; the scapes with continuous or discontinuous endodermis, divided or undivided pericycle, vascular bundles absent in the cortex and in the pith. These anatomical characteristics of the leaves and scapes occur in different species and can be used to separate them into Divise or Conferti sections. It was possible to confirm the proposed taxonomy based only on the morphological characteristics. Other anatomical features such as: presence or absence of air in the cortex roots and hypodermis which originate water parenchyma reserves in the mesophyll, can be an adaptative response that plants towards produce the environmental factors in this ecosystem.

Anatomical features of species of Cyperaceae from northeastern Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Diversity of fragments in the collapse of brittle solids

An experimental study of fragmentation of brittle solids under the application of repeated impulsive force is made, emphasizing the behavior of the diversity of fragments. Several scaling relations involving diversity and number of fragments are obtained from experiments and the results are compared with computer simulations. © 1998 Elsevier Science B.V. All rights reserved.

Aquatic macrophytes of Itaipu Reservoir, Brazil: Survey of species and ecological considerations

In a survey of the aquatic macrophytes of the Itaipu Reservoir, we identified 62 taxa in 25 families and 42 genera. The highest number taxa was observed for the emergent macrophytes (40 taxa). Reduced fluctuation in water level, increased light penetration, and sediment enrichment by nutrients and organic matter following the formation of the reservoir favored the appearance of a species-rich community of submerged macrophytes (23% of the taxa identified). The aquatic macrophytes were found mainly near the mouths of the main tributaries of the reservoir, in shallow area of depth less than 2 meters. In addition to the shallow depth, the greater nutrient input from the tributaries and relative protection from wind explained this distribution. Among the species found, Egeria najas merits mention for its occurrence in all localities sampled, with biomass values varying between 98 and 186 gDW/m2. Some potential nuisance species such as Eichhornia crassipes, Salvinia auriculata, and Pistia stratiotes also deserve attention, since they were also observed to be covering large areas of Itaipu Reservoir. © 1999, Paraná Institute of Technology Publication.

Seed production of species belonging to the palm collection of the FCAV-UNESP, Jaboticabal, state of Sao Paulo, Brazil

The seed production of fully developed specimens belonging to the palm collection of the Experimental Nursery of the FCAV-UNESP was observed. This paper gives information useful for nursery growers: average fruit weight, seed germination, procedures for sowing, time of fruit harvest and possibility of seed storage. At the nursery, the time until the first seedling emerged has varied, according to the species, from one to more than ten months. For better germination, fruits must be collected when completely mature; the fleshy mesocarp must be removed before sowing. Seed storage for a few months has been possible for some species, by removing the fleshy mesocarp, drying the seeds in shade, treating them with a fungicide, packing them in plastic bags and maintaining the seed lots at 20°C. These results agree with reports about some other species and general recommendations of the related literature.

Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina

Anastomosis group 3 (AG-3) of Rhizoctonia solani (teleomorph = Thanatephorus cucumeris) is frequently associated with diseases of potato (AG-3 PT) and tobacco (AG-3 TB). Although isolates of R. solani AG-3 from these two Solanaceous hosts are somatically related based on anastomosis reaction and taxonomically related based on fatty acid, isozyme and DNA characters, considerable differences are evident in their biology, ecology, and epidemiology. However, genetic diversity among field populations of R. solani AG-3 PT and TB has not been documented. In this study, the genetic diversity of field populations of R. solani AG-3 PT and AG-3 TB in North Carolina was examined using somatic compatibility and amplified fragment length polymorphism (AFLP) criteria. A sample of 32 isolates from potato and 36 isolates from tobacco were paired in all possible combinations on PDA plus activated charcoal and examined for their resulting somatic interactions. Twenty-eight and eight distinct somatic compatibility groups (SCG) were identified in the AG-3 PT and AG-3 TB samples, respectively. AFLP analyses indicated that each of the 32 AG-3 PT isolates had a distinct AFLP phenotype, whereas 28 AFLP phenotypes were found among the 36 isolates of AG-3 TB. None of the AG-3 PT isolates were somatically compatible or shared a common AFLP phenotype with any AG-3 TB isolate. Clones (i.e., cases where two or more isolates were somatically compatible and shared the same AFLP phenotype) were identified only in the AG-3 TB population. Four clones from tobacco represented 22% of the total population. All eight SCG from tobacco were associated with more than one AFLP phenotype. Compatible somatic interactions between AG-3 PT isolates occurred only between certain isolates from the same field (two isolates in each of four different fields), and when this occurred AFLP phenotypes were similar but not identical.

Cytogenetic analysis of species of the genera Acestrorhynchus, Oligosarcus and Rhaphiodon (Teleostei: Characiformes)

In the present study the karyotypes and the number and position of nucleolus organizer regions (NORs) of four species of Characiformes are described. The analyses showed that Acestrorhynchus lacustris had 2n=50 chromosomes (8M+34SM+6ST+2A), Oligosarcus longirostris had 2n=50 chromosomes (2M+20SM+10ST+18A), Oligosarcus cf. paranensis from Keller and Mourão rivers had 2n=50 chromosomes (2M+26SM+8ST+14A), and Rhaphiodon vulpinus had 2n=54 chromosomes (32M+12SM+8ST+2A). The number of NOR-bearing chromosome pairs ranged from one to three among the species studied. The results available show that there is no variation in the diploid number within the genera analyzed. However, clear differences related to the karyotypic formulae and the number and position of Ag-NORs were found even in the comparison between populations. The possible relationships between the genera analyzed and other Characiformes are discussed.