Sequence heterogeneity and phylogenetic relationships between the copia retrotransposon in Drosophila species of the repleta and melanogaster groups

Although the retrotransposon copia has been studied in the melanogaster group of Drosophila species, very little is known about copia dynamism and evolution in other groups. We analyzed the occurrence and heterogeneity of the copia 5' LTR-ULR partial sequence and their phylogenetic relationships in 24 species of the repleta group of Drosophila. PCR showed that copia occurs in 18 out of the 24 species evaluated. Sequencing was possible in only eight species. The sequences showed a low nucleotide diversity, which suggests selective constraints maintaining this regulatory region over evolutionary time. on the contrary, the low nucleotide divergence and the phylogenetic relationships between the D. willistoni/Zaprionus tuberculatus/melanogaster species subgroup suggest horizontal transfer. Sixteen transcription factor binding sites were identified in the LTR-ULR repleta and melanogaster consensus sequences. However, these motifs are not homologous, neither according to their position in the LTR-ULR sequences, nor according to their sequences. Taken together, the low motif homologies, the phylogenetic relationship and the great nucleotide divergence between the melanogaster and repleta copia sequences reinforce the hypothesis that there are two copia families.

Organization of 5S rDNA in species of the fish Leporinus: two different genomic locations are characterized by distinct nontranscribed spacers

To address understanding the organization of the 5S rRNA multigene family in the fish genome, the nucleotide sequence and organization array of 5S rDNA were investigated in the genus Leporinus, a representative freshwater fish group of South American fauna. PCR, subgenomic library screening, genomic blotting, fluorescence in situ hybridization, and DNA sequencing were employed in this study. Two arrays of 5S rDNA were identified for all species investigated, one consisting of monomeric repeat units of around 200 bp and another one with monomers of 900 bp. These 5S rDNA arrays were characterized by distinct NTS sequences (designated NTS-I and NTS-II for the 200- and 900-bp monomers, respectively); however, their coding sequences were nearly identical. The 5S rRNA genes were clustered in two chromosome loci, a major one corresponding to the NTS-I sites and a minor one corresponding to the NTS-II sites. The NTS-I sequence was variable among Leporinus spp., whereas the NTS-II was conserved among them and even in the related genus Schizodon. The distinct 5S rDNA arrays might characterize two 5S rRNA gene subfamilies that have been evolving independently in the genome.

P elements in the saltans group of Drosophila: a new evaluation of their distribution and number of genomic insertion sites

Few are studies on P elements that have addressed the saltans group. These studies had shown that species from the cordata and elliptica subgroups were devoid of any discernible P homologous sequences, while species from the parasaltans, sturtevanti, and saltans subgroups all contain P element sequences. Our analyses showed the presence of one to 15 P element insertion sites in species of the saltans group, including Drosophila neocordata and Drosophila emarginata (cordata and elliptica subgroups, respectively). From these species, only those from the parasaltans, sturtevanti, and saltans subgroups harbor canonical P elements and, only those of the last two subgroups seem to harbor putative full-sized elements. Due to the low similarity of the sequences found in D. neocordata and D. emarginata to those earlier described, we suggest that these sequences might be rudimental P element derivatives that were present in the ancestral of the subgenus Sophophora. (C) 2004 Elsevier B.V. All rights reserved.

PHYLOGENETIC STUDIES OF SOME SPECIES OF THE GENUS COFFEA .2. NUMERICAL-ANALYSIS OF ISOENZYMATIC DATA

Thirteen species of Coffea were studied for five enzymes systems, including alpha and beta esterase, alkaline phosphatase, acid phosphatase, malate dehydrogenase and acid dehydrogenase. Three coefficients of similarity: Simple Matching, Jaccard and Ochiai and three different clustering methods: Single Linkage, Complete Linkage and Unweighted Pair Group, using Arithmetic Averages (UPGMA) were used to analyse the data.The phylogenetic relationships among the twelve diploid species and between them and the tetraploid species C. arabica showed that similarity among species of the same subsection is not always greater than among species of different subsections. In addition, although there are several similarity groups in common, established by isoenzymatic polymorphism, morphological characteristics, chemical data, crossability and geographic distribution, there is no common trend among the phylogenetic relationships as indicated by all these different evaluating procedures.

A New Species of Proceratophrys (Anura: Cycloramphidae) from Midwestern Brazil

We describe adult morphology, advertisement call, and natural history aspects of a new frog species from riparian habitats alongside intermittent headwater streams in southwestern Cerrado, the second largest biome in Brazil. Presently known from three localities in Mato Grosso State, the new species belongs to the Proceratophrys cristiceps group. It is characterized mainly by small size (adult snout vent length approximately 46 mm), snout rounded in dorsal view and obtuse in lateral view, absence of flared lips, dorsal skin granular, and absence of both postocular swellings and prominent palpebral appendages. The advertisement call of the new species consists of a single note with 19-25 pulses. Calls are repeated at mean intervals of 0.7 sec. Mean dominant frequency is 1,250.2 Hz, with ascendant modulation.

Moenkhausia celibela: a new species from the Amazon basin, Brazil (Characiformes: Characidae)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Cytotaxonomy of the crickets Endecous Saussure, 1878 with an overview of the chromosomes of Phalangopsinae Group (Orthoptera: Phalangopsinae)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

A new synonym, a new male description and new geographical records for three Ceraeochrysa species (Neuroptera: Chrysopidae)

Ceraeochrysa Adams is the largest genus in Chrysopini with 62 valid species distributed in the New World. The taxonomy of this group is complex and largely based on male genitalic characters. There are still serious complications, especially with the species that have been described solely from female specimens. The male of C. montoyana (Navas, 1913), unknown previously, is herein described for the first time, and compared with its closest relative, C. claveri (Navas, 1911). Ceraeochrysa acutipuppis Adams & Penny, 1985 is designated as a junior synonym of C. fairchildi (Banks, 1946) based on the evidence that both species share external morphological features uncommon in other species of the genus. The species C. claveri, C. fairchildi and C. montoyana are recorded from Venezuela for the first time. External morphology and genitalia of these insects are described and illustrated.

Comparative larval morphology of eight species of Hypsiboas Wagler (Amphibia, Anura, Hylidae) from Argentina and Uruguay, with a review of the larvae of this genus

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Faunal analysis of the species Anastrepha in the fruit growing complex Gaviao River, Bahia, Brazil

Besides being considered the greatest pests of fruit growing, fruit flies constitute a large obstacle to the growth of the exportation of fresh fruit. Knowledge of the structure of fruit fly communities is of great importance to the bioecological studies of these insects, but there is a lack of information about the faunistic composition of fruit flies in Brazil. The objective of this work was to analysis the composition of the species of Anastrepha, in eleven mango orchards of the fruit growing complex Gaviao River, Bahia, Brazil. These studies were done in 2004 and 2005, in Anage, Caraibas and Belo Campo town, 23 McPhail traps, which collected 798 female fruit flies from the genus Anastrepha. The structure of these communities was evaluated in each orchard by means of faunistic indexes frequency, constancy, dominance, diversity and similarity. The number of species varied from four to eight in each orchard; and the following species was recorded: Anastrepha fraterculus (Wiedemann), Anastrepha obliqua (Macquart), Anastrepha dissimilis Stone, Anastrepha amita Zucchi, Anastrepha distincta Greene, Anastrepha pickeli Lima. Anastrepha sororcula Zucchi and Anastrepha zenildae Zucchi. The most frequent and dominant species were A. fraterculus and A. obliqua. The indexes of diversity varied from 1.01 to 1.62. In general, the similarity between orchards was high (above 55.0%). We observed the formation of groups, one constituted by Frutvale, Carlan, Santa Clara and Panorama orchards; another composed of Cofet, Campo Gaviao and Ouro Verde and a third group formed by Boa Vista orchard. Barra da Onca and Arruda are distinguished from other orchards.

Ancestral polymorphism and recent invasion of transposable elements in Drosophila species

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Four species of Brazilian poison frogs related to Epipedobates pictus (Dendrobatidae): taxonomy and natural history observations

Presents morphological and natural history data on Epipedobates pictus and three additional taxa currently regarded as synonyms of the former: Epipedobates braccatus, E. flavopictus and E. hahneli. Morphological data on tadpoles and adults, in addition to distribution patterns and vocalizations, indicate that the four taxa represent distinct species. -from Authors

Cytogenetic studies of three species of Glandulocaudinae (Pisces, Characiformes, Characidae)

Cytogenetic studies of three species of the subfamily Glandulocaudinae showed that Mimagoniates microlepis presents 2n = 52 chromosomes (6M + 20SM + 18ST + 8A), Mimagoniates lateralis presents 2n = 52 chromosomes (6M + 20SM + 16ST + 10A) and Glandalocauda melanogenys presents 2n = 52 chromosomes (4M + 12SM + 22ST + 14A). The number of NOR-bearing chromosome pairs ranged from two to four. Differences in number and position of NORs at the species and population levels were detected, suggesting that several chromosome rearrangements occurred in the evolutionary process of this group. Some aspects related to the chromosome evolution of the Glandulocaudinae are discussed.

New species of Hylodes from the Atlantic forest of Brazil (Amphibia: Leptodactylidae)

A new species of leptodactylid frog is described from Eldorado, state of Sao Paulo, southeastern Brazil. The new species is a member of the Hylodes lateristrigatus group and is characterized by its large size, slightly rugose to rugose dorsal skin texture, robust body, and high number of notes per call. Descriptions of the advertisement call and information on natural history are provided.

Genetic variation between several species of sections Extranervosae, Caulorrhizae, Heteranthae, and Triseminatae (genus Arachis) estimated by DNA polymorphism

Genetic variation within and among accessions of the genus Arachis representing sections Extranervosae, Caulorrhizae, Heteranthae, and Triseminatae was evaluated using RFLP and RAPD markers. RAPD markers revealed a higher level of genetic diversity than did RFLP markers, both within and among the species evaluated. Phenograms based on various band-matching algorithms revealed three major clusters of similarity among the sections evaluated. The first group included the species from section Extranervosae, the second group consisted of sections Triseminatae, Caulorrhizae, and Heteranthae, and the third group consisted of one accession of Arachis hypogaea, which had been included as a representative of section Arachis. The phenograms obtained from the RAPD and RFLP data were similar but not identical. Arachis pietrarellii, assayed only by RAPD, showed a high degree of genetic similarity with Arachis villosulicarpa. This observation supported the hypothesis that these two species are closely related. It was also shown that accession V 7786, previously considered to be Arachis sp. aff. pietrarellii, and assayed using both RFLPs and RAPDs, was possibly a new species from section Extranervosae, but very distinct from A. pietrarellii.