Antarctic ice sheet topography, cavity geometry, and global bathymetry (RTopo 1.0.5-beta)

Sub-ice shelf circulation and freezing/melting rates in ocean general circulation models depend critically on an accurate and consistent representation of cavity geometry. Existing global or pan-Antarctic data sets have turned out to contain various inconsistencies and inaccuracies. The goal of this work is to compile independent regional fields into a global data set. We use the S-2004 global 1-minute bathymetry as the backbone and add an improved version of the BEDMAP topography for an area that roughly coincides with the Antarctic continental shelf. Locations of the merging line have been carefully adjusted in order to get the best out of each data set. High-resolution gridded data for upper and lower ice surface topography and cavity geometry of the Amery, Fimbul, Filchner-Ronne, Larsen C and George VI Ice Shelves, and for Pine Island Glacier have been carefully merged into the ambient ice and ocean topographies. Multibeam survey data for bathymetry in the former Larsen B cavity and the southeastern Bellingshausen Sea have been obtained from the data centers of Alfred Wegener Institute (AWI), British Antarctic Survey (BAS) and Lamont-Doherty Earth Observatory (LDEO), gridded, and again carefully merged into the existing bathymetry map. The global 1-minute dataset (RTopo-1 Version 1.0.5) has been split into two netCDF files. The first contains digital maps for global bedrock topography, ice bottom topography, and surface elevation. The second contains the auxiliary maps for data sources and the surface type mask. A regional subset that covers all variables for the region south of 50 deg S is also available in netCDF format. Datasets for the locations of grounding and coast lines are provided in ASCII format.

Caractérisation du rôle signalétique de la protéine de polarité CRB3 dans le cancer

Les épithéliums recouvrent l’ensemble des surfaces et des cavités internes du corps humain. Le fonctionnement des cellules épithéliales repose sur la répartition des constituants cellulaires au sein de compartiments distincts : un compartiment apical, un compartiment latéral, et un compartiment basal : c’est ce que l’on appelle la polarité apico-basale. Plus de 80 % des cancers proviennent d’un dérèglement des cellules épithéliales. De plus, la polarité épithéliale est perdue lors des stades avancés du cancer, suggérant qu’elle contribue activement à la progression tumorale. C’est pourquoi il apparaît crucial de mieux comprendre les mécanismes qui régulent la polarité épithéliale. La polarité est assurée par un ensemble de protéines réparties au sein des différents compartiments et agissant sous forme de modules très dynamiques. Un de ces modules est articulé autour de la protéine CRB3, qui agit comme un déterminant apical essentiel des cellules épithéliales. L’expression de CRB3 est perdue dans de nombreuses lignées cellulaires cancéreuses en culture, suggérant que CRB3 pourrait détenir des fonctions inhibitrices de certains processus liés à l’avancement tumoral. Cependant, l’impact fonctionnel de la perte de CRB3 dans ces lignées cancéreuses reste encore peu connu, tout comme les mécanismes signalétiques agissant en aval de CRB3. Les travaux présentés dans cette thèse mettent en lumière de nouvelles évidences concernant le rôle fonctionnel de la perte de CRB3 dans différentes lignées cellulaires cancéreuses. Plus précisément, nous montrons que CRB3 détient un rôle signalétique important lui conférant une fonction à la fois dans la morphogenèse épithéliale, mais également dans le maintien de l’intégrité épithéliale. Dans un premier temps, nous montrons que la ré-expression de CRB3 dans des cellules cancéreuses d’origine épithéliale permet le rétablissement d’une morphologie de type épithéliale, en lien avec l’organisation d’un réseau circonférentiel d’acto-myosine. Nous identifions également le sentier signalétique activé en aval de CRB3 et menant à l’activation de la petite GTPase RhoA, nécessaire au remodelage de la morphologie et du réseau d’acto-myosine des cellules cancéreuses. Ce sentier semble notamment jouer un rôle important en aval de CRB3 pour limiter la migration cellulaire. Ensuite, nous montrons que CRB3 contrôle différents sentiers signalétiques, et notamment la voie ERK MAP Kinase, une voie de signalisation fortement dérégulée dans le cancer. Bien que le rôle fonctionnel de cette régulation soit encore inconnu, elle pourrait contribuer à limiter la progression tumorale en aval de CRB3. Enfin, nous montrons que la perte d’expression de Crb3 chez la souris induit une mortalité périnatale associée à des défauts de morphogenèse épithéliale, indiquant que Crb3 est requise pour la viabilité des souris et le développement des structures épithéliales. L’ensemble de ces travaux contribue à une meilleure compréhension des mécanismes liant la perte de la polarité épithéliale à l’avancement du processus tumoral, et vise à identifier de nouvelles cibles thérapeutiques pour lutter contre le développement de.cancers.

Transcriptome-Wide Mapping of Pea Seed Ageing Reveals a Pivotal Role for Genes Related to Oxidative Stress and Programmed Cell Death

Understanding of seed ageing, which leads to viability loss during storage, is vital for ex situ plant conservation and agriculture alike. Yet the potential for regulation at the transcriptional level has not been fully investigated. Here, we studied the relationship between seed viability, gene expression and glutathione redox status during artificial ageing of pea (Pisum sativum) seeds. Transcriptome-wide analysis using microarrays was complemented with qRT-PCR analysis of selected genes and a multilevel analysis of the antioxidant glutathione. Partial degradation of DNA and RNA occurred from the onset of artificial ageing at 60% RH and 50 degrees C, and transcriptome profiling showed that the expression of genes associated with programmed cell death, oxidative stress and protein ubiquitination were altered prior to any sign of viability loss. After 25 days of ageing viability started to decline in conjunction with progressively oxidising cellular conditions, as indicated by a shift of the glutathione redox state towards more positive values (>-190 mV). The unravelling of the molecular basis of seed ageing revealed that transcriptome reprogramming is a key component of the ageing process, which influences the progression of programmed cell death and decline in antioxidant capacity that ultimately lead to seed viability loss.

Regulation of mitotic BubR1 phosphorylation by the BubR1 pseudokinase domain

BubR1 est une protéine importante dans le point de contrôle de la mitose pour la stabilisation des interactions entre kinétochores et microtubules (KT-MT). Ces fonctions protègent de la ségrégation anormale des chromosomes et de l’instabilité du génome. BubR1 possède des sites de phosphorylation mitotique hautement conservés dans le domaine régulant l’attachement des kinétochores (KARD), où S676 et S670 sont phosphorylées respectivement par la kinase polo-like 1 (Plk1) et par la kinase cycline-dépendante 1 (Cdk1). Ces sites de phosphorylation sont essentiels pour le recrutement de la phosphatase PP2A-B56, qui stabilise les interactions KT-MT. Nos résultats montrent que la délétion entière ou des mutations qui déstabilisent le domaine pseudokinase de BubR1, causent la perte de phosphorylation des résidus S676 et S670 en mitose. Notre hypothèse est que le domaine pseudokinase de BubR1 peut jouer un rôle essentiel dans la régulation de la phosphorylation du KARD et donc dans la stabilisation des interactions KT-MT.

RGS14 (414)-mediated prevention of an episodic memory loss: a study of molecular mechanism

A large proportion of human populations suffer memory impairments either caused by normal aging or afflicted by diverse neurological and neurodegenerative diseases. Memory enhancers and other drugs tested so far against memory loss have failed to produce therapeutic efficacy in clinical trials and thus, there is a need to find remedy for this mental disorder. In search for cure of memory loss, our laboratory discovered a robust memory enhancer called RGS14(414). A treatment in brain with its gene produces an enduring effect on memory that lasts for lifetime of rats. Therefore, current thesis work was designed to investigate whether RGS14(414) treatment can prevent memory loss and furthermore, explore through biological processes responsible for RGS-mediated memory enhancement. We found that RGS14(414) gene treatment prevented episodic memory loss in rodent models of normal aging and Alzheimer´s disease. A memory loss was observed in normal rats at 18 months of age; however, when they were treated with RGS14(414) gene at 3 months of age, they abrogated this deficit and their memory remained intact till the age of 22 months. In addition to normal aging rats, effect of memory enhancer treatment in mice model of Alzheimer´s disease (AD-mice) produced a similar effect. AD-mice subjected to treatment with RGS14(414) gene at the age of 2 months, a period when memory was intact, showed not only a prevention in memory loss observed at 4 months of age but also they were able to maintain normal memory after 6 months of the treatment. We posit that long-lasting effect on memory enhancement and prevention of memory loss mediated through RGS14(414) might be due to a permanent structural change caused by a surge in neuronal connections and enhanced neuronal remodeling, key processes for long-term memory formation. A neuronal arborization analysis of both pyramidal and non-pyramidal neurons in brain of RGS14(414)-treated rats exhibited robust rise in neurites outgrowth of both kind of cells, and an increment in number of branching from the apical dendrite of pyramidal neurons, reaching to almost three times of the control animals. To further understand of underlying mechanism by which RGS14(414) induces neuronal arborization, we investigated into neurotrophic factors. We observed that RGS14 treatment induces a selective increase in BDNF. Role of BDNF in neuronal arborization, as well as its implication in learning and memory processes is well described. In addition, our results showing a dynamic expression pattern of BDNF during ORM processing that overlapped with memory consolidation further support the idea of the implication of this neurotrophin in formation of long-term memory in RGS-animals. On the other hand, in studies of expression profiling of RGS-treated animals, we have demonstrated that 14-3-3ζ protein displays a coherent relationship to RGS-mediated ORM enhancement. Recent studies have demonstrated that the interaction of receptor for activated protein kinase 1 (RACK1) with 14-3-3ζ is essential for its nuclear translocation, where RACK1-14-3-3ζ complex binds at promotor IV region of BDNF and promotes an increase in BDNF gene transcription. These observations suggest that 14-3-3ζ might regulate the elevated level of BDNF seen in RGS14(414) gene treated animals. Therefore, it seems that RGS-mediated surge in 14-3-3ζ causes elevated BDNF synthesis needed for neuronal arborization and enhanced ORM. The prevention of memory loss might be mediated through a restoration in BDNF and 14-3-3ζ protein levels, which are significantly decreased in aging and Alzheimer’s disease. Additionally, our results demonstrate that RGS14(414) treatment could be a viable strategy against episodic memory loss.

Suppression subtractive hybridization profiles of radial growth phase and metastatic melanoma cell lines reveal novel potential targets

Background: Melanoma progression occurs through three major stages: radial growth phase (RGP), confined to the epidermis; vertical growth phase (VGP), when the tumor has invaded into the dermis; and metastasis. In this work, we used suppression subtractive hybridization (SSH) to investigate the molecular signature of melanoma progression, by comparing a group of metastatic cell lines with an RGP-like cell line showing characteristics of early neoplastic lesions including expression of the metastasis suppressor KISS1, lack of alpha v beta 3-integrin and low levels of RHOC. Methods: Two subtracted cDNA collections were obtained, one (RGP library) by subtracting the RGP cell line (WM1552C) cDNA from a cDNA pool from four metastatic cell lines (WM9, WM852, 1205Lu and WM1617), and the other (Met library) by the reverse subtraction. Clones were sequenced and annotated, and expression validation was done by Northern blot and RT-PCR. Gene Ontology annotation and searches in large-scale melanoma expression studies were done for the genes identified. Results: We identified 367 clones from the RGP library and 386 from the Met library, of which 351 and 368, respectively, match human mRNA sequences, representing 288 and 217 annotated genes. We confirmed the differential expression of all genes selected for validation. In the Met library, we found an enrichment of genes in the growth factors/receptor, adhesion and motility categories whereas in the RGP library, enriched categories were nucleotide biosynthesis, DNA packing/repair, and macromolecular/vesicular trafficking. Interestingly, 19% of the genes from the RGP library map to chromosome 1 against 4% of the ones from Met library. Conclusion: This study identifies two populations of genes differentially expressed between melanoma cell lines from two tumor stages and suggests that these sets of genes represent profiles of less aggressive versus metastatic melanomas. A search for expression profiles of melanoma in available expression study databases allowed us to point to a great potential of involvement in tumor progression for several of the genes identified here. A few sequences obtained here may also contribute to extend annotated mRNAs or to the identification of novel transcripts.

Quantificação da difusão na ressonância magnética da mama: ADC e Kurtosis

Mestrado em Radiações Aplicadas às Tecnologias da Saúde. Área de especialização: Ressonância Magnética

Renormalization and α-limit set for expanding Lorenz maps

We establish a one-to-one correspondence between the renormalizations and proper totally invariant closed sets (i.e., α-limit sets) of expanding Lorenz map, which enable us to distinguish periodic and non-periodic renormalizations. We describe the minimal renormalization by constructing the minimal totally invariant closed set, so that we can define the renormalization operator. Using consecutive renormalizations, we obtain complete topological characteriza- tion of α-limit sets and nonwandering set decomposition. For piecewise linear Lorenz map with slopes ≥ 1, we show that each renormalization is periodic and every proper α-limit set is countable.

Mississippi Drive (Iowa 92) from Main Street to the Norbert F. Beckey Bridge in Muscatine, Iowa, STP-U-5330(614)—27-70, Muscatine County, 2015

The proposed action consists of upgrading Mississippi Drive (Iowa Highway 92) through downtown Muscatine, Iowa. The Mississippi Drive Corridor Project begins south of the Main Street/Grandview Avenue intersection, continuing to the East 2nd Street/Norbert F. Beckey Bridge intersection, which marks the end of the project. It passes through a mix of commercial, residential, Central Business District and industrial land uses. The total length of the project is approximately 1.6 miles, including 19 intersections (6 with traffic signals). Refer to the vicinity map on Figure 1. The current roadway is a 3- to 4-lane, urban facility with both divided and undivided medians. The roadway, ranging from 40 to 64 feet wide, is considered difficult to cross for pedestrians, especially for small children or elderly. The width of this roadway is being considered to be narrowed to improve the accessibility to the downtown from the Mississippi River riverfront area by pedestrians. This project also includes accommodations for bicycles and pedestrians and measures to reduce flooding on the roadway.

Cardiovascular and respiratory responses to microinjection of L-glutamate into the caudal pressor area in conscious and anesthetized rats

The role of the caudal pressor area (CPA) in the maintenance of vasomotor tonus in anesthetized and decerebrate animals has been clearly established. In conscious animals, however, the participation of CPA in the cardiovascular control remains to be fully elucidated. In the present study, unilateral L-glutamate (L-Glu) (10 and/or 20 nmol/70 nl) microinjection into CPA, in conscious male Wistar rats (250-280 g) caused a significant increase in mean arterial blood pressure (MAP; control: 112 ± 1.9 mmHg; after 20 nmol L-Glu: 139 ± 4.5 mmHg, N = 12, P<0.05) and respiratory rate (control: 81 ± 3.5 breaths/min; after 10 nmol L-Glu: 92 ± 3 breaths/min, P<0.05; after 20 nmol L-Glu: 104 ± 5 breaths/min, N = 6, P<0.05). The subsequent anesthesia with urethane caused a significant increase in basal respiratory frequency (conscious: 81 ± 3.5 breaths/min; under urethane: 107 ± 1.3 breaths/min, N = 6, P<0.05). Anesthesia also significantly attenuated L-Glu-evoked pressor (conscious: deltaMAP = +27 mmHg; anesthetized: deltaMAP = +18 mmHg, P<0.05) and respiratory responses. These results suggest that glutamatergic receptors in the CPA are involved in cardiovascular and respiratory modulation in conscious rats.

Cambios en la estructura del paisaje del Alt Empordà en el período 1957-2001

El paisaje, concebido como una unidad espacial y temporalmente pluriescalar caracterizada por unos patrones de distribución - una estructura-, unas funciones y una red de flujos de materia, energía e información (Forman y Godron, 1986), constituye un modelo apropiado para estudiar el territorio (Marull, 2002). En la presente investigación se hace un análisis de los cambios ocurridos en la estructura del mosaico paisajístico de la comarca de l´Alt Empordà entre 1957 y 2001, para ellos se divide la comarca en unidades paisajísticas basadas en criterios fisiográficos determinados a escala 1:25000. El análisis de la estructura paisajística de las diferentes unidades paisajísticas se ha realizado a través de indicadores de composición y de estructura según clases paisajísticas (cubiertas o usos del suelo), mediante el cálculo y análisis de indicadores de estructura desarrollados por la ecología del paisaje, los cuales, han permitido caracterizar y analizar las transformaciones en el tamaño, la forma y el arreglo espacial de los parches tipo que configuran el mosaico paisajístico. Para el proceso de cálculo y análisis espacial se han empleado los sistemas de información geográfica (SIGs), el programa Patch Analyst 1.2. La información cartográfica se elaboró a partir de ortofotomapas digitales y fotos aéreas generados por el ICC, así como de fuentes secundarias. Además, el trabajo incluye una aplicación teórico-metodológica a la identificación de redes ecológicas a través del uso de indicadores, así como el uso de inventarios fitosociológicos en la evaluación de hábitats borde.

Cladistic analysis of Abracrini genera (Orthoptera, Acrididae, Ommatolampinae)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Fixed points on torus fiber bundles over the circle

The main purpose of this work is to study fixed points of fiber-preserving maps over the circle S-1 for spaces which axe fibrations over S-1 and the fiber is the torus T. For the case where the fiber is a surface with nonpositive Euler characteristic, we establish general algebraic conditions, in terms of the fundamental group and the induced homomorphism, for the existence of a deformation of a map over S-1 to a fixed point, free map. For the case where the fiber is a torus, we classify all maps over S-1 which can be deformed fiberwise to a fixed point free map.

Modelagem dinâmica espacial de mudanças no uso do solo urbano: contribuição metodológica

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Aplicação dos métodos gravimétrico e magnetométrico para a definição do comportamento estrutural da faixa de dobramentos Araguaia

O presente trabalho consiste na interpretação de informações gravimétricas e aeromagnetométricas (Projeto Geofísico Brasil-Canadá - PGBC) da região setentrional da Faixa de Dobramentos Araguaia, envolvendo uma área de aproximadamente 129.000km², compreendida entre os meridianos 47°50’W e 50°30’W e paralelos 4°50'S e 9°00'S. Abrange porções sudeste do Estado do Pará, noroeste de Goiás e oeste do Maranhão. Os trabalhos de campo constaram de levantamentos gravimétrico e altimétrico, ao longo de rodovias que constituem a rede viária regional, e os resultados obtidos, após correções e reduções, foram então organizados de forma a constituírem um mapa de anomalias Bouguer, apresentado em escala 1:500.000. O padrão gravimétrico da faixa de dobramentos Araguaia se caracteriza por mostrar feições predominantemente longitudinais, com curvas isoanômalas de direções submeridianas, concordante com o comportamento litológico-estrutural conhecido para a área. Na porção centro-meridional desse mapa aparece uma zona de anomalia negativa, alongada e intensa (menos de -100mgal), a qual sofre duas importantes inflexões para NW, sendo uma correlacionável ao Lineamento Carajás, e a outra na altura do paralelo 5°30'S. Apresenta zonas de altos gravimétricos, notadamente na porção noroeste (domínio cratônico), relacionada à influência das metavulcânicas do Grupo Grão Pará, e na porção nordeste, devida a massas densas introduzidas na crosta. Destaca-se também o relativo alto gravimétrico acompanhando o flanco oriental do eixo de ocorrência das braquidobras, podendo ser devido a massas excedentes colocadas sob essa região, através de esforços tectônicos, produzindo elevações do nível de base da crosta e consequentemente do embasamento. De forma genérica o flanco oriental da faixa mostra um gradiente mais intenso que o ocidental, devido principalmente à configuração geométrica das estruturas nesse setor. Da mesma forma merece destaque o gradiente regional ascendente de sul para norte. A análise das cartas de intensidade magnética do PGBC fornecem condições à individualização de diversos domínios magnéticos, perfeitamente correlacionáveis litológico e estruturalmente com as unidades geotectônicas que compõem o arcabouço regional, assim como suas subunidades. A execução de modelamento simples, quer para as informações gravimétricas como magnetométricas, objetivaram fornecer subsídios semi-quantitativos à interpretação, de forma a auxiliar no estabelecimento do padrão geométrico do embasamento da faixa de dobramentos Araguaia, assim como das estruturas a ela impostas. Assim, por meio do processamento das informações gravimétricas, verificou-se um padrão geométrico na forma de fatias imbricadas, estabelecidas sobre o substrato. A grande anomalia negativa da porção centro-meridional da faixa pode estar relacionada a uma deficiência de massa profunda (depressão na base da crosta) ou ainda a uma associação entre contraste de densidade e espessamento do pacote de supracrustais, nessa porção. O baixo gravimétrico da porção sudeste da área, entre Guarai e Tupirama, é devido a uma depressão do embasamento, da mesma forma como a anomalia negativa associada ao Lineamento Carajás está relacionada a uma estrutura sinformal conhecida.