structural dynamics of soluble and membrane proteins explored through molecular simulations

Otto-von-Guericke-Universität Magdeburg, Fakultät für Verfahrens- und Systemtechnik, Dissertation, 2016

Nanostructured lipid carriers as vehicles for the delivery of poorly water-soluble drugs

186 p.

Understanding immobilised enzymes by NMR spectroscopy

Enzyme immobilisation is the conversion of a soluble enzyme molecule into a solid particle form. This allows the recovery of the enzyme catalyst for its re-use and avoids protein contamination of the product streams. A better understanding of immobilised enzymes is necessary for their rational development. A more rational design can help enormously in the applicability of these systems in different areas, from biosensors to chemical industry. Immobilised enzymes are challenging systems to study and very little information is given by conventional biochemical analysis such as catalytic activity and amount of protein. Here, solid-state NMR has been applied as the main technique to study these systems and evaluate them more precisely. Various approaches are presented for a better understanding of immobilised enzymes, which is the aim of this thesis. Firstly, the requirements of a model system of study will be discussed. The selected systems will be comprehensibly characterised by a variety of techniques but mainly by solid-state NMR. The chosen system will essentially be the enzyme α-chymotrypsin covalently immobilised on two functionalised inorganic supports – epoxide silica and epoxide alumina – and an organic support – Eupergit®. The study of interactions of immobilised enzymes with other species is vital for understanding the macromolecular function and for predicting and engineering protein behaviour. The study of water, ions and inhibitors interacting with various immobilised enzyme systems is covered here. The interactions of water and sodium ions were studied by 17O and 23Na multiple-quantum techniques, respectively. Various pore sizes of the supports were studied for the immobilised enzyme in the presence of labelled water and sodium cations. Finally, interactions between two fluorinated inhibitors and the active site of the enzyme will be explored using 19F NMR, offering a unique approach to evaluate catalytic behaviour. These interactions will be explored by solution-state NMR firstly, then by solid-state NMR. NMR has the potential to give information about the state of the protein in the solid support, but the precise molecular interpretation is a difficult task.

Analgesic Effects of Fatty Acid Amide Hydrolase Inhibition in a Rat Model of Neuropathic Pain

Cannabinoid-based medicines have therapeutic potential for the treatment of pain. Augmentation of levels of endocannabinoids with inhibitors of fatty acid amide hydrolase (FAAH) is analgesic in models of acute and inflammatory pain states. The aim of this study was to determine whether local inhibition of FAAH alters nociceptive responses of spinal neurons in the spinal nerve ligation model of neuropathic pain. Electrophysiological studies were performed 14-18 days after spinal nerve ligation or sham surgery, and the effects of the FAAHinhibitor cyclohexylcarbamic acid 3-carbamoyl biphenyl-3-yl ester (URB597) on mechanically evoked responses of spinal neurons and levels of endocannabinoids were determined. Intraplantar URB597 (25 _g in 50 _l) significantly ( p _ 0.01) attenuated mechanically evoked responses of spinal neurons in sham-operated rats. Effects of URB597 were blocked by the cannabinoid 1 receptor (CB1 ) antagonist AM251 [N-1-(2,4-dichlorophenyl)-5-(4-iodophenyl)-4-methyl-N-1-piperidinyl-1H-pyrazole-3-carboxamide] (30_g in50_l) and the opioid receptor antagonist naloxone. URB597 treatment increased levels of anandamide, 2-arachidonyl glycerol, and oleoyl ethanolamide in the ipsilateral hindpaw of shamoperated rats. Intraplantar URB597 (25 _g in 50 _l) did not, however, alter mechanically evoked responses of spinal neurons in spinal nerve ligated (SNL) rats or hindpaw levels of endocannabinoids. Intraplantar injection of a higher dose of URB597 (100 _g in 50 _l) significantly ( p_0.05) attenuated evoked responses of spinal neurons in SNL rats but did not alter hindpaw levels of endocannabinoids. Spinal administration of URB597 attenuated evoked responses of spinal neurons and elevated levels of endocannabinoids in shamoperated and SNL rats. These data suggest that peripheral FAAH activity may be altered or that alternative pathways of metabolism have greater importance in SNL rats.

Characterization of water-soluble organic compounds in bioaerosols by liquid chromatography and fluorescence spectroscopy

In the last decades, the effects of the air pollution have been increasing, especially in the case of the human health diseases. In order to overcome this problem, scientists have been studying the components of the air. As a part of water-soluble organic compounds, amino acids are present in the atmospheric environment as components of diverse living organisms which can be responsible for spreading diseases through the air. Liquid chromatography is one technique capable of distinguish the different amino acids from each other. In this work, aiming at separating the amino acids found in the aerosols samples collected in Aveiro, the ability of four columns (Mixed-Mode WAX-1, Mixed-Mode HILIC-1, Luna HILIC and Luna C18) to separate four amino acids (aspartic acid, lysine, glycine and tryptophan) and the way the interaction of the stationary phases of the columns with the analytes is influenced by organic solvent concentration and presence/concentration of the buffer, are being assessed. In the Mixed-Mode WAX-1 column, the chromatograms of the distinct amino acids revealed the separation was not efficient, since the retention times were very similar. In the case of lysine, in the elution with 80% (V/V) MeOH, the peaks appeared during the volume void. In the Mixed-Mode HILIC-1 column, the variation of the organic solvent concentration did not affect the elution of the four studied amino acids. Considering the Luna HILIC column, the retention times of the amino acids were too close to each other to ensure a separation among each other. Lastly, the Luna C18 column revealed to be useful to separate amino acids in a gradient mode, being the variation of the mobile phase composition in the organic solvent concentration (ACN). Luna C18 was the column used to separate the amino acids in the real samples and the mobile phase had acidified water and ACN. The gradient consisted in the following program: 0 – 2 min: 5% (V/V) ACN, 2 – 8 min: 5 – 2 % (V/V) ACN, 8 – 16 min: 2% (V/V) ACN, 16 – 20 min: 2 – 20 % (V/V) ACN, 20 – 35 min: 20 – 35 % (V/V) ACN. The aerosols samples were collected by using three passive samplers placed in two different locations in Aveiro and each sampler had two filters - one faced up and the other faced down. After the sampling, the water-soluble organic compounds was extracted by dissolution in ultra-pure water, sonication bath and filtration. The resulting filtered solutions were diluted in acidified water for the chromatographic separation. The results from liquid chromatography revealed the presence of the amino acids, although it was not possible to identify each one of them individually. The chromatograms and the fluorescence spectra showed the existence of some patterns: the samples that correspond to the up filters had more intense peaks and signals, revealing that the up filters collected more organic matter.

A genetic variant of the CAPN10 gene in Mexican subjects with dyslipidemia is associated with increased HDL-cholesterol concentrations after the consumption of a soy protein and soluble fiber dietary portfolio

Dyslipidemia is a major public health problem, and therefore, it is important to develop dietary strategies to diminish the prevalence of this disorder. It was recently reported that diet may play an important role in triggering insulin resistance by interacting with genetic variants at the CAPN10 gene locus in patients with metabolic syndrome. Nonetheless, it remains unknown whether genetic variants of genes involved in the development of type 2 diabetes are associated with variations in high-density lipoprotein cholesterol (HDL-C). The study used a single-center, prospective, cohort design. Here, we assessed the effect of four variants of the CAPN10 gene on HDL-C levels in response to a soy protein and soluble fiber dietary portfolio in subjects with dyslipidemia. In 31 Mexican dyslipidemic individuals, we analyzed four CAPN10 gene variants (rs5030952, rs2975762, rs3792267, and rs2975760) associated with type 2 diabetes. Subjects with the GG genotype of the rs2975762 variant of the CAPN10 gene were better responders to dietary intervention, showing increased HDL-C concentrations from the first month of treatment. HDL-C concentrations in participants with the wild type genotype increased by 17.0%, whereas the HDL-C concentration in subjects with the variant genotypes increased by only 3.22% (p = 0.03); the low-density lipoprotein cholesterol levels of GG carriers tended to decrease (-12.6%). These results indicate that Mexican dyslipidemic carriers of the rs2975762-GG genotype are better responders to this dietary intervention.

Deconjugated Bile Salts Produced by Extracellular Bile-Salt Hydrolase-Like Activities from the Probiotic Lactobacillus johnsonii La1 Inhibit Giardia duodenalis In vitro Growth

Giardiasis, currently considered a neglected disease, is caused by the intestinal protozoan parasite Giardia duodenalis and is widely spread in human as well as domestic and wild animals. The lack of appropriate medications and the spread of resistant parasite strains urgently call for the development of novel therapeutic strategies. Host microbiota or certain probiotic strains have the capacity to provide some protection against giardiasis. By combining biological and biochemical approaches, we have been able to decipher a molecular mechanism used by the probiotic strain Lactobacillus johnsonii La1 to prevent Giardia growth in vitro. We provide evidence that the supernatant of this strain contains active principle(s) not directly toxic to Giardia but able to convert non-toxic components of bile into components highly toxic to Giardia. By using bile acid profiling, these components were identified as deconjugated bile-salts. A bacterial bile-salt-hydrolase of commercial origin was able to mimic the properties of the supernatant. Mass spectrometric analysis of the bacterial supernatant identified two of the three bile-salt-hydrolases encoded in the genome of this probiotic strain. These observations document a possible mechanism by which L. johnsonii La1, by secreting, or releasing BSH-like activity(ies) in the vicinity of replicating Giardia in an environment where bile is present and abundant, can fight this parasite. This discovery has both fundamental and applied outcomes to fight giardiasis, based on local delivery of deconjugated bile salts, enzyme deconjugation of bile components, or natural or recombinant probiotic strains that secrete or release such deconjugating activities in a compartment where both bile salts and Giardia are present.

Estudio de factibilidad técnico-económico para la creación y comercialización de un nuevo producto café soluble que permita incrementar la rentabilidad de la cooperativa El Espino de R.L. Antiguo Cuscatlán, La Libertad.

El presente trabajo de graduación comprende el diseño de un estudio de factibilidad técnico- económico para la creación y comercialización de un nuevo producto “café soluble” que permita incrementar la rentabilidad de la Cooperativa El Espino De R.L. ubicada en el Departamento de la Libertad, Municipio de Antiguo Cuscatlán. Para llevar a cabo la estructuración del estudio técnico- económico, fué necesario realizar una investigación de campo en el municipio de Antiguo Cuscatlán departamento de La Libertad, conociendo por parte del consumidor final y las personas encargadas de las tiendas locales, las opiniones en cuanto a las expectativas que puedan tener al adquirir una nueva marca de café soluble. Dentro de dicho estudio se realizaron encuestas para las cuales; se elaboraron dos cuestionarios, uno dirigido a un universo conformado de consumidores finales y otro dirigido a las tiendas del Municipio de Antiguo Cuscatlán, ambos cuestionarios se estructuraron con preguntas semi abiertas y cerradas, esto facilitó la realización de un diagnóstico tanto del mercado como de la situación actual de la Cooperativa El Espino de RL, permitiendo conocer el entorno tanto interno como externo del sujeto en estudio; así mismo la entrevista estuvo dirigida al Sr. José Elías Escalante (Presidente de La Cooperativa). La información obtenida fué un referente para generar estrategias que permitan la colocación del producto en el mercado y cumplir con las expectativas de los clientes, tanto a nivel de tiendas como de consumidores. Después de analizar la información documental y la investigación de campo del Municipio de Antiguo Cuscatlán Dpto. de La Libertad, se concluyó que: Existe un mercado que se encuentra satisfecho con el café soluble que actualmente consumen, pero estos estarían dispuestos adquirir nuevas marcas que puedan llegar a penetrar el mercado ya existente. Existe la viabilidad de mercado considerando que el consumo de café soluble en el municipio es elevado, por lo tanto el proyecto cuenta con un mercado para poder desarrollarse, el proyecto es viable tecnológicamente, pues existen las condiciones técnicas para poder ejecutar el proyecto sin los inconvenientes, de la maquinaria, materia prima, e instalaciones. El proyecto será factible económicamente, pues de acuerdo al estudio económico realizado este reflejaría incremento en sus utilidades a partir del año uno, del proyecto. Por lo que se recomienda: Establecer las estrategias de comercialización para cubrir el mercado meta para el proyecto dentro del municipio de Antiguo Cuscatlán, y sus respectivos canales de distribución, tomando en cuenta los niveles de producción y los procesos con los que estrictamente debe cumplir el producto. Será de suma importancia tomar en cuenta los presupuestos y demás proyecciones financieras efectuadas, pues facilitaría la toma de decisiones del proyecto, en cuanto al manejo eficiente en sus recursos y obtener una mayor rentabilidad, con el monitoreo de sus ingresos. Con este trabajo se espera contribuir en las diferentes áreas que el estudio lo requiere, brindando una propuesta para incrementar la rentabilidad de La Cooperativa El Espino De RL.

Transport in the blood of an anti-tumor water-soluble rutheniun cyclopentadienyl complex: a fluorescence study on albumin binding

Dissertação de mestrado, Qualidade em Análises, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2014

Development of water-soluble polyanionic carbosilane dendrimers as novel and highly potent topical anti-HIV-2 microbicides

This is the author’s version of a work that was accepted for publication in Nanoscale.

Sintesi e proprietà fotovoltaiche di politiofeni water- soluble

Nell’ottica di una limitazione dello sfruttamento di fonti fossili, della diminuzione delle emissioni di gas serra e dell’introduzione, nel mercato energetico, di dispositivi fotovoltaici organici (OPVs) che permettano di sfruttare l’energia solare conferendo leggerezza e flessibilità alle celle fotovoltaiche, è stato sintetizzato un nuovo polialchiltiofene contenente unità elettron-donatrici e accettrici in catena principale, da testare come strato fotoattivo all’interno di un dispositivo OPV. In particolare, a partire da 1,6-dibromoesano e 3-bromotiofene, è stato preparato 4,7-bis(3-(6-bromoesil)tiofen-2-il)-2,1,3-benzotiadiazolo mediante reazione di cross-coupling di Suzuki con l’estere pinacolico dell'acido 2,1,3-benzotiadiazolo-4,7-bis(boronico) e, successivamente, polimerizzato via metodo ossidativo con FeCl3. Il polimero ottenuto, poli(4,7-bis(3-(6-bromoesil)tiofen-2-il)-2,1,3-benzotiadiazolo), è stato caratterizzato mediante analisi TGA, DSC, FTIR-ATR, GPC, 1H-NMR e UV-Vis. Verrà, in seguito, post-funzionalizzato con tributilfosfina per ottenere un polimero ionico solubile in acqua o in solventi polari, al fine di evitare l’impiego di solventi aromatici o clorurati durante la deposizione del film polimerico all’interno della cella fotovoltaica.

Sintesi e caratterizzazione di materiali polimerici water-soluble per applicazioni nel campo del fotovoltaico organico

The need to use renewable energy sources, due to the massive production of pollution for the energy production, has led to the development of new technologies for the use of solar energy. The purpose of this thesis project is to synthesize and characterize new thiophene-based polymeric materials processable in water, a green solvent, for the construction of organic solar cells, promising and versatile devices used for the production of electric energy. For this, a highly regioregular polymer was synthesized through GRIM polymerization (Grignard Metathesis Polymerization) on which a study was performed to identify the optimal reaction time.

Studio e sintesi di politiofeni water-soluble contenenti gruppi elettron donatori e accettori in catena principale

Il progressivo esaurimento delle risorse fossili e l’incremento delle problematiche ambientali legate al rilascio di gas serra contribuiscono alla ricerca e all’utilizzo di fonti energetiche alternative. In questo scenario, i dispositivi fotovoltaici organici (OPVs) rappresentano uno dei modi più affascinanti e promettenti per trasformare l’energia solare, una riserva energetica potenzialmente inesauribile, a costo nullo e non inquinante, in energia elettrica. Materiali organici utilizzabili in questi dispositivi sono i polimeri π-coniugati. In quest’ottica, il lavoro è stato focalizzato sulla preparazione di due nuovi polimeri: il primo, contenente unità elettron-donatrici e accettrici in catena principale, ottenuto via polimerizzazione ossidativa in presenza di FeCl3 e successivamente post-funzionalizzato con tributilfosfina per renderlo ionico e idrosolubile; il secondo, a base di politiofene non ionico ma polare, avente funzionalità eteree nelle catene laterali, preparato sfruttando il metodo GRIM. Questi materiali sono stati caratterizzati mediante analisi spettroscopiche e verranno successivamente testati all’interno di celle solari fotovoltaiche organiche aventi configurazione SMOSCs (il primo) e BHJ (il secondo).