Evaluation of survey methods for sampling anuran species richness in the neotropics.

Species richness is central to ecological theory, with practical applications in conservation, environmental management and monitoring. Several techniques are available for measuring species richness and composition of amphibians in breeding pools, but the relative efficacy of these methods for sampling high-diversity Neotropical amphibian fauna is poorly understood. I evaluated seven studies from south and south-eastern Brazil to compare the relative and combined effectiveness of two methods for measuring species richness at anuran breeding pools: acoustic surveys with visual encounter of adults and dipnet surveys of larvae. I also compared the relative efficacy of each survey method in detecting species with different reproductive modes. Results showed that both survey methods underestimated the number of species when used separately; however, a close approximation of the actual number of species in each breeding pool was obtained when the methods were combined. There was no difference between survey methods in detecting species with different reproductive modes. These results indicate that researchers should employ multiple survey methods that target both adult and larval life history stages in order to accurately assess anuran species richness at breeding pools in the Neotropics.

Biodiversity, Species Interactions and Ecological Networks in a Fragmented World

Biodiversity is organised into complex ecological networks of interacting species in local ecosystems, but our knowledge about the effects of habitat fragmentation on such systems remains limited. We consider the effects of this key driver of both local and global change on both mutualistic and antagonistic systems at different levels of biological organisation and spatiotemporal scales.There is a complex interplay of patterns and processes related to the variation and influence of spatial, temporal and biotic drivers in ecological networks. Species traits (e.g. body size, dispersal ability) play an important role in determining how networks respond to fragment size and isolation, edge shape and permeability, and the quality of the surrounding landscape matrix. Furthermore, the perception of spatial scale (e.g. environmental grain) and temporal effects (time lags, extinction debts) can differ markedly among species, network modules and trophic levels, highlighting the need to develop a more integrated perspective that considers not just nodes, but the structural role and strength of species interactions (e.g. as hubs, spatial couplers and determinants of connectance, nestedness and modularity) in response to habitat fragmentation.Many challenges remain for improving our understanding: the likely importance of specialisation, functional redundancy and trait matching has been largely overlooked. The potentially critical effects of apex consumers, abundant species and supergeneralists on network changes and evolutionary dynamics also need to be addressed in future research. Ultimately, spatial and ecological networks need to be combined to explore the effects of dispersal, colonisation, extinction and habitat fragmentation on network structure and coevolutionary dynamics. Finally, we need to embed network approaches more explicitly within applied ecology in general, because they offer great potential for improving on the current species-based or habitat-centric approaches to our management and conservation of biodiversity in the face of environmental change.

Nile tilapia, Oreochromis niloticus, productive performance and carcass characteristics as related to food management

Male juveniles of Nile tilapia, Oreochromis niloticus, were stocked in 12, 300-m 2 ponds at a density of 1.7 fish/m 2 to evaluate the effects of different food management methods (natural foods and diets in pellet, floating or minced form) on fish production and carcass characteristics. Water quality variables monitored during the period were within acceptable levels for the species. Total fish production was significantly different (P < 0.05) and the highest values were obtained with diets in pellet (5,997 kg/ha) and floating (5,441 kg/ha) form. The fish fed diets had higher contents of body fat (1.57 to 1.98%) and visceral fat (12.64 to 25.04%) than fish fed natural food, which had levels between 0.17 and 0%, respectively. Natural food treatment yielded lower fish production and fish with lower body fat, while treatments that yielded higher fish production (rations) higher percentage of visceral fat. © 2004 by The Haworth Press, Inc. All rights reserved.

Tree species composition and environmental relationships in a Neotropical swamp forest in Southeastern Brazil

We examined the relationships between topography, soil properties and tree species composition in a Neotropical swamp forest in southeastern Brazil. Plots were sampled in the forest, encompassing three different soil ground water regimes along the topographical declivity. All non-climbing plant individuals with trunk height >1.3 m were sampled. A canonical correspondence analysis-CCA-of the species-environmental relationships grouped tree species according to drainage and chemical soil conditions. A total of 86 species were found, being 77 species in the inferior, 40 species in the intermediate and 35 species in the superior topographic section. Some species were among the 10 most abundant ones, both in the overall sampled area and in each topographical section, with alternation events occurring only with their abundance position. However, substantial differences in floristic composition between sections were detected in a fine spatial scale, due to higher number of species, diversity index (H′) and species unique (exclusives) in the inferior topographic section. These higher values can be attributed to its higher spatial heterogeneity that included better drained and seasonally waterlogged soils, higher soil fertility and lower acidity. The increase of the soil water saturation and the uniform conditions derived from the superficial water layer has led to a lower number of species and an increase on the palm trees abundance in the intermediate and superior sections. Our results showed that at a small spatial scale niche differentiation must be an important factor related to the increase of the local diversity. The wide distribution of the most abundant species in the studied area and the increase of local diversity corroborate the pattern of distribution of species in larger scales of swamp forests, in which the most abundant species repeat themselves in high densities in different remnants. However, the floristic composition of each remnant is strongly variable, contributing to the increase of regional diversity. © 2008 Springer Science+Business Media B.V.

Characterization of esterase patterns in hepatopancreas of three species of Macrobrachium (Palaemonidae)

The genus Macrobrachium (Bate, 1868) belongs to the Palaemonidae family. These species are commonly found in lakes, floodplains and rivers in tropical and subtropical regions of South America. The Macrobrachium genus encompasses nearly 210 species of ecological and economic importance. In this study, three species of Macrobrachium (M acrobrachium jelskii, M acrobrachium amazonicum and M acrobrachium brasiliense) were studied in order to characterize the esterase patterns in the hepatopancreas, which were still unknown. Esterases are enzymes which catalyze the hydrolysis of esters. In the hepatopancreas, these enzymes play important roles in several metabolic processes involved in some functions of this organ, such as detoxification and digestion. Twelve esterase bands (EST1 to EST12) were detected in these species, and a comparison among them showed no qualitative differences in interspecific bands, or between males and females. Inhibitors were used to classify the esterase bands. The results indicated seven acetylesterases, two carboxylesterases, one arylesterase, and one cholinesterase. The EST11 band was not detected in these procedures because of its lower frequency. Statistical analyses showed no variability among the species, in either interspecific or intraspecific assays. These results support the hypothesis of a high evolutionary conservation of esterases in the hepatopancreas of these crustaceans. The data enabled us to assess the genetic structure of these species through the use of esterasic enzymes. It also contributes to our knowledge about the biology of these poorly studied species. Knowledge on the genetic structure of populations and species are essential when defining priorities for their management and conservation. © 2012 Elsevier Ltd.

Edge-interior differences in the species richness and abundance of drosophilids in a semideciduous forest fragment

Habitat fragmentation is the main cause of biodiversity loss, as remnant fragments are exposed to negative influences that include edge effects, prevention of migration, declines in effective population sizes, loss of genetic variability and invasion of exotic species. The Drosophilidae (Diptera), especially species of the genus Drosophila, which are highly sensitive to environmental variation, have been used as bioindicators. A twelve-month field study was conducted to evaluate the abundance and richness of drosophilids in an edge-interior transect in a fragment of semideciduous forest in São Paulo State, Brazil. One objective of the study was to evaluate the applied methodology with respect to its potential use in future studies addressing the monitoring and conservation of threatened areas. The species abundance along the transect showed a clear gradient, with species associated with disturbed environments, such as Drosophila simulans, Scaptodrosophila latifasciaeformis and Zaprionus indianus, being collected at the fragment edge and the species D. willistoni and D. mediostriata being found in the fragment's interior. Replacement of these species occurred at approximately 60 meters from the edge, which may be a reflection of edge effects on species abundance and richness because the species found within the habitat fragment are more sensitive to variations in temperature and humidity than those sampled near the edge. The results support the use of this methodology in studies on environmental impacts. © 2013 Penariol and Madi-Ravazzi; licensee Springer.

Recreational anglers and fishing guides from an estuarine protected area in southeastern Brazil: Socioeconomic characteristics and views on fisheries management

The Iguape and Cananéia Lagoon-Estuarine Complex is a biodiversity hotspot in southeastern Brazil. In recent decades, the region has become an important destination for recreational fishing. The objective of this study was to analyze the socioeconomic characteristics of visiting anglers and fishing guides working in the Cananéia-Iguape-Peruíbe Environmental Protected Area and their views on fisheries management. Data were collected through semi-structured interviews conducted between January 2009 and January 2010. We interviewed 278 anglers, who were predominantly male (93%) with a mean age of 47 years and from the state of São Paulo. The targeted species were snooks (Centropomus undecimales and Centropomus parallelus) and weakfishes (Cynoscion leiarchus and Cynoscion acoupa). Only half the anglers had the mandatory fishing license, and many of them lacked knowledge about catch quotas and minimum size requirements for specific species. The fishing guides (n = 80) were all male, with a mean age of 39 years and extensive experience. Most of the guides believe that the study area is somewhat degraded due to the removal of riparian vegetation, siltation, pollution, and especially the depletion of fish stocks. The opinions of the stakeholders (anglers and guides) converge on the high priority needs of the fishery and possible management actions regarding recreational fishing, such as improved fisheries enforcement (first in order of importance), proper training of fishing guides, zoning of fishing areas, and the definition of a maximum size limit. © 2013 Elsevier Ltd.

Identification of Candida species in the clinical laboratory: A review of conventional, commercial, and molecular techniques

In healthy individuals, Candida species are considered commensal yeasts of the oral cavity. However, these microorganisms can also act as opportunist pathogens, particularly the so-called non-albicans Candida species that are increasingly recognized as important agents of human infection. Several surveys have documented increased rates of C. glabrata, C. tropicalis, C. guilliermondii, C. dubliniensis, C. parapsilosis, and C. krusei in local and systemic fungal infections. Some of these species are resistant to antifungal agents. Consequently, rapid and correct identification of species can play an important role in the management of candidiasis. Conventional methods for identification of Candida species are based on morphological and physiological attributes. However, accurate identification of all isolates from clinical samples is often complex and time-consuming. Hence, several manual and automated rapid commercial systems for identifying these organisms have been developed, some of which may have significant sensitivity issues. To overcome these limitations, newer molecular typing techniques have been developed that allow accurate and rapid identification of Candida species. This study reviewed the current state of identification methods for yeasts, particularly Candida species. © 2013 John Wiley & Sons A/S.

Genetic markers for the identification of hybrids among catfish species of the family Pimelodidae

Fish hybrids provide genetically manipulated products of excellent value for the commercial aquaculture industry. However, if handled or marketed incorrectly, they can cause great financial loss to producers as well as threaten the native species. Herein, molecular markers are established to identify hybrid lineages of pimelodids and characterize them in relation to their parental species, Pseudoplatystoma corruscans, Pseudoplatystoma reticulatum, Phractocephalus hemioliopterus and Leiarius marmoratus. The results show that the mitochondrial genes are useful for identification of the cross-direction through the characterization of the maternal lineage. The nuclear genes allow identification of the interspecific hybrids. Use of genetic markers can avoid misidentification of hybrids that occur in simple morphological analysis. Thus, the present results allow the routine monitoring of pimelodid hybrids for their correct management and trade in aquaculture. © 2013 Blackwell Verlag GmbH.

Sustainable weed management on ornamental beds

The weed presence on ornamental beds is a main aspect that interferes with the garden maintenance, especially in tropical countries, as it causes an unpleasant effect and competes with the ornamentals. The use of herbicides is not always economically viable, besides, it causes phytotoxic effects on the ornamental plants, so the alternative to minimize this problem is the use of mulch; however, there is little information on the literature about it. Thus, the aim of this work was to evaluate the effect of rice straw mulching on the weed management of Salvia splendens beds. There were four treatments (0, 4, 6 and 8 t ha-1 of rice straw) and five replications. Brachiaria decumbens (200 plants m-2) and Amaranthus viridis (50 plants m-2) were sown in each plot in order to ensure the weed presence. The evaluation of the weed community was performed 60 days after sowing. The weeds on the plots of 0.48 m2 were identified and removed by hand and then dried in a chamber of forced air ventilation (under 703C) for the dry matter determination which later helped to calculate the phytosociological indexes like the Relative Density, Relative Frequency, Relative Dominance and the Importance Value Index. Nineteen species of weeds were identified. Among them, B. decumbens and A. viridis presented the highest Relative Importance level and the use of 8 t ha-1 of rice straw mulching helped to minimize the Relative Importance of these plants; however, the weed management with the use of rice straw was not effective.

Partitioning of net primary production in Eucalyptus and Acacia stands and in mixed-species plantations: Two case-studies in contrasting tropical environments

The introduction of nitrogen fixing species (NFS) in fast-growing tree plantations is an alternative option to reduce fertilizer inputs. However, the success of mixed-species plantations depends on the balance between positive interactions among species (resulting from facilitation and/or complementarity) and the negative effects of interspecific competition.Using a carbon budget approach and coupling measurements of standing biomass, aboveground litterfall and soil CO2 efflux, we assessed the influence of replacing half of eucalypt trees by Acacia mangium on total belowground carbon flux (TBCF), net primary production (NPP) and its partitioning between above- and belowground growth at two tropical sites in Brazil (Itatinga) and in Congo (Kissoko) exhibiting contrasting climates, edaphic conditions and wood productions.Annual soil CO2 efflux (FS) was significantly lower in the acacia monocultures than in eucalypt monocultures and mixed-species stands at both sites. Annual FS was significantly lower at Itatinga compared to Kissoko for all stands while TBCF was significantly lower in the eucalypt stands only. In the eucalypt monocultures we found a significantly lower aboveground NPP (ANPP) and wood production (wood NPP) at Kissoko compared to Itatinga that was almost fully balanced by a significantly higher belowground NPP (BNPP), leading to similar NPP. Similarly, acacia monocultures exhibited significantly higher ANPP and wood NPP at Itatinga than at Kissoko. The mixed-species stands exhibited a significantly lower wood NPP and ANPP than the eucalypt monocultures at the Brazilian site while NPP of the mixture was not significantly different than the average NPP of the two monocultures. At the Congolese site, NPP of the mixture was significantly higher than the average NPP of the two monocultures. NPP was similar in the mixed-species stand and the eucalypt monoculture with a significantly lower partitioning of NPP to belowground production, leading to a one third higher wood biomass at harvest in the mixed-species stand.A positive effect of growing eucalypts with the nitrogen fixing acacia trees on stand wood production occurred at Kissoko but not at Itatinga. Mixed-species plantations with NFS can be advocated at sites where the productive gains resulting from nitrogen fixation are not compromised by other resource limitations. © 2012 Elsevier B.V.

Susceptibility profile of a Brazilian yeast stock collection of Candida species isolated from subjects with Candida-associated denture stomatitis with or without diabetes

Objective: This study investigated the susceptibility of 198 clinical isolates of Candida species against caspofungin, amphotericin B, itraconazole, and fluconazole. Study Design: Suspensions of the microorganisms were spread on Roswell Park Memorial Institute (RPMI) agar plates. Etest strips were placed on the plates, and the minimal inhibitory concentration (MIC) was read after incubation (48 h at 37°C). Data were analyzed by a factorial analysis of variance and a 2 × 2 post hoc test (α = .05). Results: C glabrata showed the highest MIC values (P < .001) against caspofungin, itraconazole, and fluconazole. For amphotericin B, the MIC values of C tropicalis and C glabrata (P = .0521) were higher than those of C albicans (P < .001). Itraconazole was the least effective antifungal; 93.3% of the C glabrata isolates, 3.3% of the C albicans, and 1.3% of the C tropicalis were resistant. All microorganisms were susceptible to caspofungin and amphotericin B. Conclusions: Caspofungin and amphotericin B should be recommended as an effective alternative for the management of oral Candida infections when treatment with topical or other systemic drugs has definitely failed. © 2013 Elsevier Inc. All rights reserved.

Desenvolvimento e identificação de mirossatélites para pirarara - Phractocephalus hemioliopterus (Siluriformes, Pimelodidae): para análise de variabilidade genética

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Análise da variabilidade e estruturação genética do tubarão azul, Prionace glauca (Chondrichthyes, Carcharhinidae) no Oceano Atlântico Sul Ocidental utilizando marcador molecular do DNA mitocondrial

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Ecologia e comportamento do Cuxiú-Preto (Chiropotes Satanas) na paisagem fragmentada da Amazônia Oriental

Cuxiús são primatas frugívoros especializados na predação de sementes. O cuxiú-preto (Chiropotes satanas), atualmente ameaçado de extinção, é endêmico de uma área da Amazônia oriental brasileira bastante povoada e desmatada. O principal objetivo deste estudo foi pesquisar o comportamento e a ecologia de dois grupos de cuxiús-pretos vivendo sob diferentes graus de fragmentação de hábitat, de maneira a entender como parâmetros ecológicos nestes diferentes contextos influenciam estratégias comportamentais. Além disso, o estudo procurou identificar fatores que limitam a viabilidade a longo prazo do cuxiú-preto e coletar informações que possam contribuir com planos de manejo e conservação. O estudo foi realizado na margem direita do rio Tocantins, no reservatório de Tucuruí, Estado do Pará, Brasil (415'S, 4931'W). Dois grupos de cuxiús-pretos foram estudados: um (denominado T4) em um grande fragmento de floresta situado na margem do reservatório (1.300 ha, 39 indivíduos) e outro numa pequena ilha (19,4 ha, oito indivíduos) coberta por floresta. O comportamento dos dois grupos foi monitorado durante 12 meses (1.153 horas de observação) utilizando metodologias de amostragem por varredura e de todas as ocorrências por 4 a 5 dias consecutivos por mês por grupo. Além de coletar dados sobre seus orçamentos de atividades, todos os recursos alimentares utilizados foram documentados, os percursos diários anotados e as interações sociais intra e interespécies registradas. Transecções botânicas (10 x 100 ha) cobrindo um hectare no sítio T4 e 0,5 ha no sítio Ilha foram estabelecidas e uma subamostra de árvores (DAP ≥ 10 cm) e cipós (DAP ≥ 5 cm) foi marcada e medida para um inventário florístico e para a coleta de dados fenológicos que ocorreu em intervalos de 30 dias durante 14 meses. Os dois grupos diferiram em todos os aspectos de seu comportamento e ecologia. O tempo empregado em diferentes atividades variou significativamente entre eles. O deslocamento (35,4%) foi responsável pela maior proporção do orçamento de atividades anual do grupo T4, enquanto o grupo Ilha dedicou mais tempo para a alimentação (30,0%). Interações sociais foram responsáveis por uma proporção relativamente grande do orçamento de atividades dos dois grupos (T4 8,5%; Ilha 15,2%). Ao longo do periodo do estudo ambos os grupos consumiram um grande número de diferentes espécies vegetais (173 grupo T4; 132 grupo Ilha; 240 ambos) e suas dietas variaram significantemente tanto em termos de itens consumidos quanto em composição taxonômica, sendo que a dieta do grupo T4 foi mais diversa. Ambos os grupos despenderam a maior parte de seu tempo consumindo sementes (T4 54,0%; Ilha 59,9%), apesar de sua dieta também incluir outros itens tais como polpa de frutos (T4 25,0%; Ilha 13,7%), flores (T4 12,3%; Ilha 17,4%) e, em menor grau, medula de galhos e artrópodes. O grupo T4 utilizou uma área de 98,6 ha, enquanto os membros do grupo Ilha utilizaram 17,2 ha. O uso do espaço e o tamanho do percurso diário (T4 4025 m 994 m; Island 2807 m 289 m) variaram entre os grupos e estiveram ligados, no grupo T4, à variação no tamanho do grupo ao longo do ano resultante de seu sistema de organização social de fissão-fusão. Ao contrário, o grupo Ilha foi mais coeso. As diferenças na ecologia e comportamento dos dois grupos estiveram ligadas ás diferenças em seus respectivos hábitats. O tamanho dos sítios foi importante mas também o foi a variação na disponibilidade de alimentos determinada pela composição taxonômica da vegetação dos mesmos. Resultados do inventário florístico revelaram uma maior diversidade de espécies no sítio T4. No entanto importantes espécies alimentares estavam ausentes ou disponíveis em quantidades variáveis em ambos os sítios. Além do valor intrínseco do conhecimento sobre as características ecológicas do cuxiú-preto, o conhecimento detalhado acumulado neste estudo pode contribuir para a formulação de ações de conservação e planos de manejo, assim como para a identificação de fatores que limitam a viabilidade a longo prazo das populações remanescentes nas paisagens fragmentadas da Amazônia oriental.