Geographic weighted regression: applicability to epidemiological studies of leprosy

Abstract: INTRODUCTION: Geographic information systems (GIS) enable public health data to be analyzed in terms of geographical variability and the relationship between risk factors and diseases. This study discusses the application of the geographic weighted regression (GWR) model to health data to improve the understanding of spatially varying social and clinical factors that potentially impact leprosy prevalence. METHODS: This ecological study used data from leprosy case records from 1998-2006, aggregated by neighborhood in the Duque de Caxias municipality in the State of Rio de Janeiro, Brazil. In the GWR model, the associations between the log of the leprosy detection rate and social and clinical factors were analyzed. RESULTS: Maps of the estimated coefficients by neighborhood confirmed the heterogeneous spatial relationships between the leprosy detection rates and the predictors. The proportion of households with piped water was associated with higher detection rates, mainly in the northeast of the municipality. Indeterminate forms were strongly associated with higher detections rates in the south, where access to health services was more established. CONCLUSIONS: GWR proved a useful tool for epidemiological analysis of leprosy in a local area, such as Duque de Caxias. Epidemiological analysis using the maps of the GWR model offered the advantage of visualizing the problem in sub-regions and identifying any spatial dependence in the local study area.

The BACTEC MGIT(tm) 320 system as a laboratory tool to diagnose tuberculosis in a Brazilian hospital with a high prevalence of HIV infection

Abstract: INTRODUCTION: The World Health Organization endorses the BACTEC Mycobacterial Growth Indicator Tube (MGIT)(tm) system as a rapid, sensitive, and specific method to diagnostic of tuberculosis. Here, we compared the performance of this system against Ogawa-Kudoh cultures and microscopy. METHODS: A total of 927 samples were obtained between December 2011 and December 2013 from 652 cases of suspected tuberculosis at the School Hospital of the Federal University of Rio Grande in Brazil. RESULTS: The MGIT system confirmed tuberculosis in more cases in less time. CONCLUSIONS: The MGIT system is an effective tool for early diagnosis of tuberculosis, especially in patients with HIV/AIDS.

Aspectos ecológicos da ictiofauna no baixo Tocantins.

No propósito de prever os efeitos sobre as comunidades icticas pelo represamento do rio Tocantins com a conclusão da barragem de Tucurui, e de possibilitar o acompanhamento da situação apôs o enchimento do reservatório, estudos da ecologia da ictiofauna foram desenvolvidos na região sob provável influência da represa. O trecho do rio Tocantins considerado é constituído de 3 partes com características diferentes, denominadas montante, corredeiras e jusante. Em cada um desses subtrechos foram amostradas as comunidades de peixes por meio de. bateria de malhadeiras, duas vezes ao ano, e durante 3 anos consecutivos. O bom ajustamento dos dados aos modelos existentes de estrutura de comunidades mostra que, em cada local é encontrada uma comunidade única e em equilíbrio. Essas comunidades são caracterizadas por uma grande riqueza em espécies, que traduz uma grande estabilidade, por uma equitabilidade elevada, relacionada à riqueza de nutrientes no ambiente e por uma alta abundância em peixes. As comunidades são diferentes em cada um dos 3 subtrechos devido a dois fenômenos: a) area limitada de distribuição de algumas espécies e b) existência de particularidades ambientais que determinam a presença de certos espécies especializadas. Amplas variações temporais são observadas , o que mostra a grande, importância dos deslocamentos sazonais de varias espécies no funcionamento do ecos sistema. Além de possibilitarem, no futuro, um acompanhamento da fase de estabilização do lago de Tucuruí, esses resultados permitem prever, em particular, uma diminuição do número de espécies no local da represa.

Número de vértebras de characiformes do rio Amazonas e seu uso na identificação de larvas do grupo

Vertebras numbers are related to mymere numbers, consequently are a useful tool for identifying the species of fish larvae. We present here vertebrae counts and estimations of the number of myomeres for 29 species of Characiformes which have their reproduction linked to the Amazon river. We also analyse the potencial of vertebrae counts for the identification of the larvae.

A proposed Pleistocene/Holocene lake in the Amazon basin and its significance to Amazonian geology and biogeography

Recent studies have described widespread statigraphic units of Late Pleistocene and Holocene age in the western part of the Amazon Basin. The recognition of deltaic sedimentation in the uppermost these units near Rio Branco, Brazil, at a modern elevation of approximately 500 feett leads to the conclusion that this area was situated on the edge of a large Amazonian lake that existed in the recent past when Andean tectonism caused active downwarping of the western edge of the Amazon Basin. The ramifications of this "Lago Anazonas" hypothesis extend into every area of modern Amazonian geology and biology.

Notes on the ethnoicthyology of fishermen from the Tocantins river (Brazil)

Ethnobiology includes the study of how populations perceive and classify organisms. This study focuses on the utilization and classification of fishes by fishermen from the Tocantins river. The study area is located between the cities of Imperatriz and Estreito (Maranhão and Tocantins States). Interviews with fishermen and collection of fish species were performed from October 1987 to June 1988. The criteria used by fishermen to classify fish species are mainly morphological, such as related to body shape and coloration. Fish habitat is also an information used in folk classification. Terrestrial plants and animals are a reference for some fish names. Fishermen showed a deeper knowledge and detailed classification of species of fish used for food, sale, or medicine. Folk classification represents the knowledge a population has on its environment, and it is more detailed on species which are part of its realized niche as indicated by this study.

VARIAÇÃO NA QUALIDADE ÓPTICA DA ÁGUA DO SISTEMA RIO-RESERVATÓRIO DA USINA HIDRELÉTRICA DE TUCURUÍ/PA

Entre os anos de 1983 e 1986 foram coletadas informações sobre o comportamento áa penetração na água da radiação solar noe períodos anterior e posterior a formação do reservatório da usina hidrelétrica de Tucuruí, no Pará. Tais medidas foram obtidas em locais pré-fixados à montante da barragem, abrangendo as épocas chuvosa e seca. Para cada série de dados foram calculadas a irradiância, o coeficiente de atenuação Κ e a profundidade da zona eufótica. Erros associados aos cálculos também foram analisados. Através das análises efetuadas verificou-se que a atenuação da radiação solar pela água foi maior no período chuvoso, ocorrendo a situação inversa durante a estiagem. Constatado o comportamento sazonal de K, este foi relacionado com a enorme quantidade de sedimentos em suspensão transportado anualmente pelo sistema Araguaia-Tocantins. Notou-se que no período pós-enchimento do reservatório, houve uma nítida alteração nos valores de K, com diminuição dos valores máximos. Evidenciou-se que, com a diminuição da velocidade do curso d'água, o apote no lago de material suspenso começou a se depositar, iniciando o fenômeno da segmentação.

On occurrence, habitat specificity and natural history of adult tiger beetles (Coleoptera: Carabidae: Cicindelinae) near Manaus, Central Amazonia, and key to the larvae of tiger beetle genera

Over a seven year period from 1991 to 1997, 22 species of tiger beetles, representing nine genera, were recorded near Manaus, Brazil. In the Whitewaterfloodplains along the Rio Solimões-Amazonas (Ilha de Marchantaria), three diurnal species inhabit inundation forests and six species (two diurnal, four nocturnal) live in open areas. Data on their natural history and adaptation to living conditions in floodplains are presented. Fifteen species were located on non-flooded uplands (Reserva Florestal A. Ducke). Five diurnal species inhabit the forest floor, two species are canopy dwellers, and eight species (seven diurnal, one nocturnal) live in open areas on whitesand or laterite. Only one species, Pentacomia lacordairei, was found in both floodplain and upland forests. A key to the larvae of tiger beetle genera located near Manaus is presented.

Wood density of trees in black water floodplains of Rio Jaú National Park, Amazonia, Brazil

The Jaú National Park is the largest protected forested area in the world. The Vitória Amazônica Foundation is working towards understanding its ecosystem, to which this paper contributes. Wood density was analysed in 27 common tree species growing in the blackwater flood-plains of the Rio Jaú, an affluent of the Rio Negro (Amazonia, Brazil). Wood was sampled with an increment borer. Mean wood density of the analysed species ranged from 0.35 to 0.87 g cm-3. The mean of all sampled species was 0.67 g cm-3 (st. dev. 0.13). Lowest density was found for Hevea spruceana with 0.32 g cm-3 and highest for Crudia amazonica with 0.9 g cm-3.

Geological control of Podocnemis expansa and Podocnemis unifilis nesting areas in Rio Javaés, Bananal Island, Brazil

The distribution of the nests of Podocnemis expansa (Amazon turtle) and Podocnemis unifilis (yellow-spotted side neck turtle) along the point bars of the Javaés River in Bananal Island, demonstrates a clear preference of these chelonians for differentiated geological environments, in respect to the morphology, grain size or height of the nests in relation to the level of the river. The topographical distribution and the differences in the grain size of the sediments that compose the point bars of the river, originated from the multiple sedimentary processes, and make possible the creation and separation of different nesting environments. Each turtle species takes advantage of the place that presents physiographic characteristics appropriate to the hatching success of their eggs. The superposition of the P. expansa and P. unifilis nest placement areas is rare. The P. expansa nests are concentrated on the central portion of the beaches where successive depositional sedimentary events produced sandy banks more than 3.3 m above the river water level. The P. unifilis nests are distributed preferentially in the upstream and downstream portions along the point bars where the sandy deposits rarely surpass 1.5 m at the moment of laying. P. expansa nests located on the beaches of fine to medium sized sand hatch in a mean of 68 days, while those incubated on beaches of medium to coarse sand size take a mean of 54 days to hatch.

Floristic, edaphic and structural characteristics of flooded and unflooded forests in the lower Rio Purús region of central Amazonia, Brazil

Despite a natural history interest in the early 1900s, relatively little ecological research has been carried out in the Rio Purús basin of central Amazonia, Brazil. Here we describe a new study area in the region of Lago Uauaçú with an emphasis on the climate, forest structure and composition, and soil characteristics between adjacent unflooded (terra firme) and seasonally inundated forests; situated within both the white-water (várzea) and black-water (igapó) drainage systems that dominate the landscape. The climate was found to be typical of that of the central Amazon. Várzea forest soils had high concentrations of nutrients, while terra firme and igapó soils were comparatively nutrient-poor. Terra firme forests were the most floristically diverse forest type, whereas várzea was intermediate, and igapó the most species-poor. The Lecythidaceae was the most important family in terra firme while the Euphorbiaceae was the most important in both várzea and igapó. There were significant differences between forest types in terms of number of saplings, canopy cover and understorey density. In contrasting our results with other published information, we conclude that the Lago Uauaçú region consists of a typical central Amazonian forest macro-mosaic, but is a unique area with high conservation value due to the intimate juxtaposition of terra firme, várzea and igapó forests.

Estrutura fitossociológica de um fragmento natural de floresta inundável em área de Campo Sujo, Lagoa da Confusão, Tocantins

Fragmentos de florestas inundáveis localizam-se naturalmente na Planície do Araguaia entre os estados de Tocantins e Mato Grosso nas áreas de Cerrado. Ocorrem sob a forma de depressões naturais, que no estado do Tocantins estão situados nas áreas de planícies de inundação, que favorecem seu alagamento, conseqüentemente, o maior tempo de retenção da água em épocas de elevada precipitação. Este estudo teve como objetivo caracterizar a estrutura de um fragmento de floresta inundável de aproximadamente um hectare, inserido em área de Campo Sujo, no município de Lagoa da Confusão, TO. Foram amostrados todos os indivíduos arbustivo-arbóreos com circunferência 1,30m do solo (CAP) > 15 cm. Ao todo, foram encontrados 665 indivíduos, 34 famílias e 49 espécies. As espécies com maior valor de cobertura, em ordem decrescente, foram Sclerolobium paniculatum var. rubiginosum (Mart. ex Tul.) Benth., Calophyllum brasiliense Cambess. e Licania apetala (E. Mey.) Fritsch. As famílias mais ricas foram Fabaceae (8), Arecaceae, Chrysobalanaceae e Vochysiaceae (3). O índice de diversidade de Shannon (H') foi de 2,97nats/ind. A distribuição de classes de diâmetro apresentou curva na forma de "J" invertido estando a maioria dos indivíduos nas sete primeiras classes.

Omnivory and resource - sharing in nutrient - deficient Rio Negro waters: stabilization of biodiversity?

Amazonian biodiversity is notorious, this is also valid for the fauna of the mineral-deficient waters of the Rio Negro System. Some 25 years of research on the benthic fauna of Central Amazonian streams resulted in species-rich foodwebs with a high degree of omnivory within dense animal communities. To exemplify the taxonomic range of omnivorous consumers, the detailed resource spectra of 18 consumer species, including Protozoa (2 species), Platyhelminthes (1 species), insects (2 species), fish (6 species) and shrimps (Decapoda, 7 species), associated primarily with the benthic habitats of Rio Negro tributaries, are presented. Special features of omnivory are characterized, and the importance of litter-decomposing fungi as essential energy input into the foodwebs is documented. It is shown that general omnivory -diverse omnivore consumers sharing most of the resource types- is a prevalent feature. The relevance of this general omnivory for the maintenance of biodiversity is discussed.

Structural and successional variability of periphytic algal community in a Amazonian lake during the dry and rainy season (Rio Branco, Acre)

The colonization process and successional patterns of a periphytic algal community were evaluated in a Amazonian Viveiro Lake (Rio Branco, Acre, Brazil). Sampling was performed over a period of 35 days; at four-day intervals for 20 days, and then at five-day intervals. Water sampling for physical, chemical and biological analyses was done during the dry and rainy season. Glass slides were used as artificial substrates for periphyton colonization. The structural community was evaluated through population density, algae class, diversity indices and descriptive species. Species richness, diversity and evenness increased as succession progressed. While density of Bacillariophyceae, Euglenophyceae and Zygnemaphyceae increased with succession, Cyanobacteria remained dominant. Synechocystis aquatilis, Synechocystis diplococcus and Navicula pseudolanceolata were the main descriptive species in both the dry and rainy season. Cymbela tumida, Frustulia rhomboides, Trachelomonas lacustris and Closterium acicularis was correlated with an increase in hydrologic level during the rainy season. Conversely, the density of Chlamydomonas sp., Chroomonas nordstedtii, Trachelomonas volvocinopsis, Trachelomonas volvocina and Synechococcus linearis was correlated with an increase in water transparency during the dry season. In general, the periphytic algal community showed high diversity and species richness independent of season. Season also had little influence on representation of algae class and main descriptive species. However, successional patterns varied by season, and changes in hydrologic levels acted directly on the succession path of periphytic algae. More research on periphyton dynamics is needed to improve our understanding of tropical lake ecosystems, especially in Amazonian.

Cholini (Coleoptera: Curculionidae: Molytinae) housed in the Invertebrate Collection of the Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil

In Brazilian Amazonia, Cholini (Coleoptera, Curculionidae, Molytinae) is represented by 53 species distributed in seven genera: Ameris Dejean, 1821; Cholus Germar, 1824; Homalinotus Sahlberg, 1823; Lobaspis Chevrolat, 1881; Odontoderes Sahlberg, 1823; Ozopherus Pascoe, 1872 and Rhinastus Schoenherr, 1825. This work documents the species of Cholini housed in the Invertebrate Collection of the Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil and gives the geographical and biological data associated with them. A total of 186 Cholini specimens were identified as belonging to 14 species (13 from Brazilian Amazonia) and five genera (Cholus, Homalinotus, Odontoderes, Ozopherus and Rhinastus). Only 24% of the Cholini species reported from Brazilian Amazonia are actually represented in the INPA collection, underscoring the need for a more systematical collecting based on available biological information. The known geographical distribution was expanded for the following species: Cholus granifer (Chevrolat, 1881) for Brazil; C. pantherinus (Olivier, 1790) for Manaus (Amazonas); Cholus parallelogrammus (Germar, 1824) for Piraquara (Paraná); Homalinotus depressus (Linnaeus, 1758) for lago Janauacá (Amazonas) and rio Tocantins (Pará); H. humeralis (Gyllenhal, 1836) for Novo Airão, Coari (Amazonas) and Porto Velho (Rondônia); H. nodipennis (Chevrolat, 1878) for Carauari, Lábrea (Amazonas) and Ariquemes (Rondônia); H. validus (Olivier, 1790) for rio Araguaia (Brasil), Manaus (Amazonas), rio Tocantins (Pará), Porto Velho and BR 364, Km 130 (Rondônia); Odontoderes carinatus (Guérin-Méneville, 1844) for Manaus (Amazonas); O. spinicollis (Boheman, 1836) for rio Uraricoera (Roraima); and Ozopherus muricatus Pascoe, 1872 for lago Janauacá (Amazonas). Homalinotus humeralis is reported for the first time from "urucuri" palm, Attalea phalerata Mart. ex Spreng.