Anatomia comparada do pulvino primário de leguminosas com diferentes velocidades de movimento foliar

Os pulvinos, estruturas responsáveis por movimentos foliares, rápidos ou lentos, em resposta a estímulos externos ou endógenos, constituem uma característica marcante das leguminosas. Os ajustes no posicionamento foliar representam um mecanismo eficiente que permite a maximização da fotossíntese em condições adversas. Na literatura disponível, a maioria das informações sobre a estrutura de pulvinos refere-se a poucas espécies de leguminosas, especialmente aquelas que apresentam movimentos rápidos. Neste trabalho é descrita a anatomia do pulvino primário de nove espécies de leguminosas nativas do cerrado com diferentes tipos e velocidades de movimento foliar, buscando identificar padrões e apontar peculiaridades estruturais. O pulvino primário das espécies estudadas apresenta epiderme unisseriada recoberta por cutícula espessa, córtex parenquimático amplo, sistema vascular central e medula reduzida ou ausente. As células do córtex externo são maiores e apresentam conteúdo fenólico, exceto em Zornia diphylla Pers.; no córtex interno, as células são justapostas e não possuem conteúdo fenólico. Os feixes vasculares colaterais são circundados por uma bainha de fibras septadas. O padrão geral de organização anatômica é comum ao pulvino das espécies estudadas, independentemente da subfamília a qual pertencem. As peculiaridades observadas estão possivelmente relacionadas com o tipo e velocidade do movimento foliar.

Morfologia e anatomia foliar de três morfotipos de Marcetia taxifolia (A. St.-Hil.) DC. (Melastomataceae) na Serra do Cipó, MG

Nos campos rupestres da Serra do Cipó, MG, é possível distinguir morfotipos de M. taxifolia com intenso polimorfismo. Os objetivos deste estudo foram caracterizar e interpretar comparativamente a morfologia e a anatomia foliar de três morfotipos em condições de campo e cultivados, relacionando os fenótipos com variações ambientais. Os morfotipos foram denominados "Rosa", "Branco" e "Rosa Cristal" devido à cor das flores e ao aspecto do solo. Foram medidos no campo: altura da planta, área da copa, diâmetro da base caulinar e número de eixos caulinares. Em casa de vegetação, sementes de cada morfotipo germinaram em seu solo de origem e no dos outros dois morfotipos. Lâminas histológicas permanentes e temporárias de folha foram feitas para estudo anatômico. Os parâmetros mais significativos foram altura das plantas, número de caules e área foliar, que nas plantas do campo apresentaram-se maior no morfotipo "Branco" e menores no "Rosa Cristal". O número de eixos caulinares foi significativamente maior em "Rosa Cristal". Marcetia taxifolia apresenta grande plasticidade fenotípica, evidenciada pela heterogeneidade encontrada nos três morfotipos estudados, no campo e em casa de vegetação. A maior divergência ocorreu entre os morfotipos "Rosa Cristal" e "Branco". A plasticidade da espécie é pouco refletida em nível anatômico, sendo as variações encontradas, insuficientes para diferenciar os morfotipos. Fatores ambientais, como a composição química do solo, especialmente as concentrações de ferro e alumínio, e a disponibilidade hídrica foram os principais fatores que influenciaram as divergências relatadas.

Variabilidade morfológica foliar de Miconia sellowiana (DC.) Naudin (Melastomataceae) em diferentes fitofisionomias no Estado do Paraná

Este estudo investigou a morfologia foliar de Miconia sellowiana, ocorrente em quatro diferentes fitofisionomias: Estepe Gramíneo-Lenhosa (EGL), Floresta Ombrófila Densa Montana (FODM), Floresta Ombrófia Mista (FOM) e Floresta Ombrófila Densa Alto-Montana (FODAM), no Estado do Paraná, Brasil. Ramos de seis indivíduos de cada fitofisionomia foram coletados, sendo selecionadas 20 folhas por indivíduo. A área foliar, massa seca foliar, área foliar específica, densidades de tricomas e de estômatos, espessura da cutícula, espessura total e dos tecidos da lâmina foliar foram analisados. As características morfológicas foliares variaram significativamente para os parâmetros analisados. As folhas de M. sellowiana da EGL e FODAM apresentaram características mais xeromórficas, com os maiores valores médios para densidade estomática e de tricomas, maiores espessuras da cutícula da face adaxial, do parênquima esponjoso e espessura total da lâmina e os menores valores médios para a área e massa seca foliar e área foliar específica. A análise de variância e a análise dos componentes principais detectaram um gradiente de mesofilia/xeromorfia entre as quatro fitofisionomias: FOM>FODM>EGL>FODAM. Aparentemente, as diferenças encontradas estão associadas com vários fatores ambientais, principalmente com as características do solo e a intensidade luminosa.

Cypsela or achene? Refining terminology by considering anatomical and historical factors

The worry about the indiscriminate use of the terms cypsela and achene for the fruits of Asteraceae has been frequently detached by specialists in this family. The present work was developed aiming to verify the existence of arguments to justify the adoption of a term against the other. After historical and anatomical analysis, we concluded that there is technical basis to consider cypsela and achene as different types of fruits. For Asteraceae, the correct is to call cypsela; achenes are only derived from superior ovaries, as in Plumbaginaceae.

Anatomical and developmental aspects of leaf galls induced by Schizomyia macrocapillata Maia (Diptera: Cecidomyiidae) on Bauhinia brevipes Vogel (Fabaceae)

Samples of healthy leaves and galls induced by Schizomyia macrocapillata Maia on Bauhinia brevipes Vogel were submitted to routine techniques to investigate gall anatomy and development. Pouch galls are induced on the abaxial surface of unfolded immature leaves, and become spheroid with long reddish hairs covering their external surface. Galls occur isolated or coalesce when in larger numbers. Gall development was divided into six phases: 1) initiation; 2) tissue re-arrangement; 3) tissue differentiation; 4) maturation; 5) growth phase; and 6) dehiscence. This last phase corresponds to gall senescence, which takes place just after the larva exits the chamber to pupate. An important developmental phase of tissue reorientation was recorded after the initiation phase. The presence of hyphae close to the covering layer characterizes this gall as an ambrosia gall and the feeding mode of the gall migde is discussed. Few hyphae were found during the first developmental phases and fungi may play an important role during gall morphogenesis. Neoformed trichomes may provide not only photoprotection but also protection against natural enemies and water loss. The neoformation of phloematic bundles suggests host manipulation and indicates the establishment of a deviating sink.

Variação na estrutura foliar de Mikania glomerata Spreng. (Asteraceae) sob diferentes condições de luminosidade

As variações estruturais foliares de Mikania glomerata Spreng. foram investigadas em distintas condições de luminosidade (pleno sol, meia-sombra e sombra; 100%, 26,4% e 13,8% de intensidade luminosa, respectivamente) associadas a diferentes tipos de coberturas vegetais numa região de Floresta com Araucária, Município de Castro, PR (25°50'64"S e 49°43'69"W). Este estudo buscou subsidiar os produtores de plantas medicinais na escolha da melhor condição de luz para plantio, gerando informações sobre o potencial das plantas medicinais na recomposição e manejo do sub-bosque da área. Após dois anos de crescimento nos tratamentos, 37 folhas foram coletadas em cada tratamento, para a análise de massa foliar fresca e seca, teor de água, área foliar, área foliar específica, densidade de estômatos e de tricomas, espessura da lâmina e pecíolo e concentração de clorofila. Os maiores valores médios de massa foliar fresca, teor de água, área foliar e área foliar específica ocorreram nas folhas do tratamento sombra, enquanto a densidade estomática e de tricomas e a espessura da lâmina apresentaram maiores valores nas folhas do tratamento pleno sol. A análise dos componentes principais mostrou uma similaridade entre as folhas do tratamento meia-sombra e pleno sol, sugerindo que baixas intensidades luminosas são suficientes para estimular as respostas expressas pela morfologia foliar. Os maiores valores médios de área e massa fresca foliar sugerem uma maior produtividade no tratamento sombra, mas estudos referentes às taxas de crescimento da planta, respostas sazonais e condições nutricionais diferenciadas são necessários para complementar as informações para adoção de métodos de cultivo mais eficientes.

Anatomical analysis of peach palm (Bactris gasipaes) leaves cultivated in vitro, ex vitro and in vivo

The present work characterized and compared the anatomical structures of the leaves of Bactris gasipaes (Arecaceae) plants grown under different cultivation conditions (in vitro, ex vitro and in vivo) with the goal of identifying the origins of the difficulties encountered in acclimatizing micro-plants. The Quant program was used to determine leaf tissue thicknesses and areas, and histochemical tests were performed on leaf sections and analyzed using light microscopy. Stomatal and trichome densities were determined using the epidermal impression method and by scanning electronic microscopy. Our results indicated that there were no discernible alterations of the anatomical characteristics of the leaves of micro-plants cultivated under differing conditions and that the thickening of the mesophyll and the vascular fibers indicated adaptive responses to ex vitro conditions. As such, the observed difficulties in acclimatizing peach palm micro-plants to ex vitro conditions cannot be attributed to plant anatomical characteristics acquired during in vitro cultivation.

Amplification of 9q34 in childhood adrenocortical tumors: a specific feature unrelated to ethnic origin or living conditions

Adrenocortical tumors (ACT) in children under 15 years of age exhibit some clinical and biological features distinct from ACT in adults. Cell proliferation, hypertrophy and cell death in adrenal cortex during the last months of gestation and the immediate postnatal period seem to be critical for the origin of ACT in children. Studies with large numbers of patients with childhood ACT have indicated a median age at diagnosis of about 4 years. In our institution, the median age was 3 years and 5 months, while the median age for first signs and symptoms was 2 years and 5 months (N = 72). Using the comparative genomic hybridization technique, we have reported a high frequency of 9q34 amplification in adenomas and carcinomas. This finding has been confirmed more recently by investigators in England. The lower socioeconomic status, the distinctive ethnic groups and all the regional differences in Southern Brazil in relation to patients in England indicate that these differences are not important to determine 9q34 amplification. Candidate amplified genes mapped to this locus are currently being investigated and Southern blot results obtained so far have discarded amplification of the abl oncogene. Amplification of 9q34 has not been found to be related to tumor size, staging, or malignant histopathological features, nor does it seem to be responsible for the higher incidence of ACT observed in Southern Brazil, but could be related to an ACT from embryonic origin.

Anatomical connections of the periaqueductal gray: specific neural substrates for different kinds of fear

The periaqueductal gray (PAG) has been traditionally considered to be an exit relay for defensive responses. Functional mapping of its subdivisions has advanced our knowledge of this structure, but synthesis remains difficult mainly because results from lesion and stimulation studies have not correlated perfectly. After using a strategy that combined both techniques and a reevaluation of the available literature on PAG function and connections, we propose here that freezing could be mediated by different PAG subdivisions depending on the presence of immediate danger or exposure to related signaling cues. These subdivisions are separate functional entities with distinct descending and ascending connections that are likely to play a role in different defensive responses. The existence of ascending connections also suggests that the PAG is not simply a final common path for defensive responses. For example, the possibility that indirect ascending connections to the cingulate cortex could play a role in the expression of freezing evoked by activation of the neural substrate of fear in the dorsal PAG has been considered.

Autoimmunity and molecular mimicry in tropical spastic paraparesis/human T-lymphotropic virus-associated myelopathy

Viruses share antigenic sites with normal host cell components, a phenomenon known as molecular mimicry. It has long been suggested that viral infections might trigger an autoimmune response by several mechanisms including molecular mimicry. More than 600 antiviral monoclonal antibodies generated against 11 different viruses have been reported to react with 3.5% of cells specific for uninfected mouse organs. The main pathological feature of tropical spastic paraparesis/human T-lymphotropic virus type I (HTLV-I)-associated myelopathy (TSP/HAM) is a chronic inflammation of the spinal cord characterized by perivascular cuffing of mononuclear cells accompanied by parenchymal lymphocytic infiltration. We detected the presence of autoantibodies against a 98- to 100-kDa protein of in vitro cultured human astrocytes and a 33- to 35-kDa protein from normal human brain in the serum of HTLV-I-seropositive individuals. The two cell proteins exhibited molecular mimicry with HTLV-I gag and tax proteins in TSP/HAM patients, respectively. Furthermore, the location of 33- to 35-kDa protein cross-reaction correlated with the anatomical spinal cord areas (in the rat model) in which axonal damage has been reported in several cases of TSP/HAM patients. Our experimental evidence strongly suggests that the demyelinating process occurring in TSP/HAM may be mediated by molecular mimicry between domains of some viral proteins and normal cellular targets of the spinal cord sections involved in the neurodegeneration.

Operant serial feature-positive conditional discrimination with composite features and different topography responses

In a serial feature-positive conditional discrimination procedure the properties of a target stimulus A are defined by the presence or not of a feature stimulus X preceding it. In the present experiment, composite features preceded targets associated with two different topography operant responses (right and left bar pressing); matching and non-matching-to-sample arrangements were also used. Five water-deprived Wistar rats were trained in 6 different trials: X-R®Ar and X-L®Al, in which X and A were same modality visual stimuli and the reinforcement was contingent to pressing either the right (r) or left (l) bar that had the light on during the feature (matching-to-sample); Y-R®Bl and Y-L®Br, in which Y and B were same modality auditory stimuli and the reinforcement was contingent to pressing the bar that had the light off during the feature (non-matching-to-sample); A- and B- alone. After 100 training sessions, the animals were submitted to transfer tests with the targets used plus a new one (auditory click). Average percentages of stimuli with a response were measured. Acquisition occurred completely only for Y-L®Br+; however, complex associations were established along training. Transfer was not complete during the tests since concurrent effects of extinction and response generalization also occurred. Results suggest the use of both simple conditioning and configurational strategies, favoring the most recent theories of conditional discrimination learning. The implications of the use of complex arrangements for discussing these theories are considered.

Scalable Feature Selection Applications for Genome-Wide Association Studies of Complex Diseases

Personalized medicine will revolutionize our capabilities to combat disease. Working toward this goal, a fundamental task is the deciphering of geneticvariants that are predictive of complex diseases. Modern studies, in the formof genome-wide association studies (GWAS) have afforded researchers with the opportunity to reveal new genotype-phenotype relationships through the extensive scanning of genetic variants. These studies typically contain over half a million genetic features for thousands of individuals. Examining this with methods other than univariate statistics is a challenging task requiring advanced algorithms that are scalable to the genome-wide level. In the future, next-generation sequencing studies (NGS) will contain an even larger number of common and rare variants. Machine learning-based feature selection algorithms have been shown to have the ability to effectively create predictive models for various genotype-phenotype relationships. This work explores the problem of selecting genetic variant subsets that are the most predictive of complex disease phenotypes through various feature selection methodologies, including filter, wrapper and embedded algorithms. The examined machine learning algorithms were demonstrated to not only be effective at predicting the disease phenotypes, but also doing so efficiently through the use of computational shortcuts. While much of the work was able to be run on high-end desktops, some work was further extended so that it could be implemented on parallel computers helping to assure that they will also scale to the NGS data sets. Further, these studies analyzed the relationships between various feature selection methods and demonstrated the need for careful testing when selecting an algorithm. It was shown that there is no universally optimal algorithm for variant selection in GWAS, but rather methodologies need to be selected based on the desired outcome, such as the number of features to be included in the prediction model. It was also demonstrated that without proper model validation, for example using nested cross-validation, the models can result in overly-optimistic prediction accuracies and decreased generalization ability. It is through the implementation and application of machine learning methods that one can extract predictive genotype–phenotype relationships and biological insights from genetic data sets.

Partikkelikokojakaumamenetelmän testaus INCA Feature

Tässä työssä testattiin partikkelikokojakaumien analysoinnissa käytettävää kuvankäsittelyohjelmaa INCA Feature. Partikkelikokojakaumat määritettiin elektronimikroskooppikuvista INCA Feature ohjelmaa käyttäen partikkeleiden projektiokuvista päällystyspigmenttinä käytettävälle talkille ja kahdelle eri karbonaattilaadulle. Lisäksi määritettiin partikkelikokojakaumat suodatuksessa ja puhdistuksessa apuaineina käytettäville piidioksidi- ja alumiinioksidihiukkasille. Kuvankäsittelyohjelmalla määritettyjä partikkelikokojakaumia verrattiin partikkelin laskeutumisnopeuteen eli sedimentaatioon perustuvalla SediGraph 5100 analysaattorilla ja laserdiffraktioon perustuvalla Coulter LS 230 menetelmällä analysoituihin partikkelikokojakaumiin. SediGraph 5100 ja kuva-analyysiohjelma antoivat talkkipartikkelien kokojakaumalle hyvin samankaltaisen keskiarvon. Sen sijaan Coulter LS 230 laitteen antama kokojakauman keskiarvo poikkesi edellisistä. Kaikki vertailussa olleet partikkelikokojakaumamenetelmät asettivat eri näytteiden partikkelit samaan kokojärjestykseen. Kuitenkaan menetelmien tuloksia ei voida numeerisesti verrata toisiinsa, sillä kaikissa käytetyissä analyysimenetelmissä partikkelikoon mittaus perustuu partikkelin eri ominaisuuteen. Työn perusteella kaikki testatut analyysimenetelmät soveltuvat paperipigmenttien partikkelikokojakaumien määrittämiseen. Tässä työssä selvitettiin myös kuva-analyysiin tarvittava partikkelien lukumäärä, jolla analyysitulos on luotettava. Työssä todettiin, että analysoitavien partikkelien lukumäärän tulee olla vähintään 300 partikkelia. Liian suuri näytemäärä lisää kokojakauman hajontaa ja pidentää analyysiin käytettyä aikaa useaan tuntiin. Näytteenkäsittely vaatii vielä lisää tutkimuksia, sillä se on tärkein ja kriittisin vaihe SEM ja kuva-analyysiohjelmalla tehtävää partikkelikokoanalyysiä. Automaattisten mikroskooppien yleistyminen helpottaa ja nopeuttaa analyysien tekoa, jolloin menetelmän suosio tulee kasvamaan myös paperipigmenttien tutkimuksessa. Laitteiden korkea hinta ja käyttäjältä vaadittava eritysosaaminen tulevat rajaamaan käytön ainakin toistaiseksi tutkimuslaitoksiin.

Efeito do molibdênio aplicado via foliar e via sementes sobre o potencial fisiológico e produtividade de sementes de soja

Objetivou-se avaliar a qualidade fisiológica e a produtividade de sementes de soja produzidas a partir de sementes enriquecidas com molibdênio, via foliar e via sementes, em dois anos consecutivos. No primeiro ano, sementes de três cultivares, CD-206, MSOY-7101 e BRS-183, foram enriquecidas com duas aplicações foliares de 400 g.ha-1 de Mo, nas fases R3 e R5. Avaliou-se a produtividade, peso de mil sementes e teor de molibdênio. A germinação e o vigor por envelhecimento acelerado foram avaliados aos zero e seis meses de armazenamento. No segundo ano, as cultivares CD-206 e BRS-183, produzidas a partir das sementes enriquecidas no ano anterior com Mo foram submetidas à aplicação, via semente, do elemento na dose de 20 g.ha-1. Avaliou-se a produtividade, peso de mil sementes, teor de molibdênio, germinação e vigor por envelhecimento acelerado. A semente produzida mediante a aplicação de molibdênio em altas doses durante as fases de R3 e R5 apresenta altas concentrações do nutriente, porém, não transfere a mesma concentração do nutriente para a semente da próxima geração. Este enriquecimento e a aplicação via semente não afetam a qualidade fisiológica das sementes produzidas, tampouco a produtividade, nas condições em que o trabalho foi realizado.

Evolutionary synthesis of stochastic gene network models using feature-based search spaces

A feature-based fitness function is applied in a genetic programming system to synthesize stochastic gene regulatory network models whose behaviour is defined by a time course of protein expression levels. Typically, when targeting time series data, the fitness function is based on a sum-of-errors involving the values of the fluctuating signal. While this approach is successful in many instances, its performance can deteriorate in the presence of noise. This thesis explores a fitness measure determined from a set of statistical features characterizing the time series' sequence of values, rather than the actual values themselves. Through a series of experiments involving symbolic regression with added noise and gene regulatory network models based on the stochastic 'if-calculus, it is shown to successfully target oscillating and non-oscillating signals. This practical and versatile fitness function offers an alternate approach, worthy of consideration for use in algorithms that evaluate noisy or stochastic behaviour.