A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease

OBJECT: The localization of any given target in the brain has become a challenging issue because of the increased use of deep brain stimulation to treat Parkinson disease, dystonia, and nonmotor diseases (for example, Tourette syndrome, obsessive compulsive disorders, and depression). The aim of this study was to develop an automated method of adapting an atlas of the human basal ganglia to the brains of individual patients. METHODS: Magnetic resonance images of the brain specimen were obtained before extraction from the skull and histological processing. Adaptation of the atlas to individual patient anatomy was performed by reshaping the atlas MR images to the images obtained in the individual patient using a hierarchical registration applied to a region of interest centered on the basal ganglia, and then applying the reshaping matrix to the atlas surfaces. RESULTS: Results were evaluated by direct visual inspection of the structures visible on MR images and atlas anatomy, by comparison with electrophysiological intraoperative data, and with previous atlas studies in patients with Parkinson disease. The method was both robust and accurate, never failing to provide an anatomically reliable atlas to patient registration. The registration obtained did not exceed a 1-mm mismatch with the electrophysiological signatures in the region of the subthalamic nucleus. CONCLUSIONS: This registration method applied to the basal ganglia atlas forms a powerful and reliable method for determining deep brain stimulation targets within the basal ganglia of individual patients.

Modified temporal approach for a rostro-temporal basal meningioma in a cat

An 11-year-old neutered female domestic shorthair indoor cat was presented to our hospital for treatment of a left-sided rostro-temporal basal meningioma. Focal seizures in the facial muscles had been observed sporadically for 1 year. Two weeks prior to presentation the cat had developed generalised seizures and was treated with symptomatic anticonvulsive treatment. Focal facial seizures, especially on the right side, persisted after medical therapy. From the computed tomography scan, a basal meningioma was suspected by the treating veterinarian. A left-sided suprazygomatical temporobasal approach to the zygomatic arch was chosen because it causes less soft tissue damage. After craniotomy, durotomy and gentle dorsal retraction of the left piriform lobe, the meningioma was removed. Postoperative magnetic resonance imaging confirmed complete excision of the tumour. One day after surgery the cat was alert and a left-sided facial nerve palsy was noticed. Otherwise the neurological examination was normal. Anticonvulsive and eye moistening therapy was continued for 3 months. Six months after surgery the cat was clinically normal without any recurrence of seizures.

Modeling Framework for the Establishment of the Apical-Basal Embryonic Axis in Plants

The apical-basal axis of the early plant embryo determines the body plan of the adult organism. To establish a polarized embryonic axis, plants evolved a unique mechanism that involves directional, cell-to-cell transport of the growth regulator auxin. Auxin transport relies on PIN auxin transporters 1], whose polar subcellular localization determines the flow directionality. PIN-mediated auxin transport mediates the spatial and temporal activity of the auxin response machinery 2-7] that contributes to embryo patterning processes, including establishment of the apical (shoot) and basal (root) embryo poles 8]. However, little is known of upstream mechanisms guiding the (re)polarization of auxin fluxes during embryogenesis 9]. Here, we developed a model of plant embryogenesis that correctly generates emergent cell polarities and auxin-mediated sequential initiation of apical-basal axis of plant embryo. The model relies on two precisely localized auxin sources and a feedback between auxin and the polar, subcellular PIN transporter localization. Simulations reproduced PIN polarity and auxin distribution, as well as previously unknown polarization events during early embryogenesis. The spectrum of validated model predictions suggests that our model corresponds to a minimal mechanistic framework for initiation and orientation of the apical-basal axis to guide both embryonic and postembryonic plant development.

Seismic anisotropy in the Morcles nappe shear zone: Implications for seismic imaging of crustal scale shear zones

Microstructures and textures of calcite mylonites from the Morcles nappe large-scale shear zone in southwestern Switzerland develop principally as a function of 1) extrinsic physical parameters including temperature, stress, strain, strain rate and 2) intrinsic parameters, such as mineral composition. We collected rock samples at a single location from this shear zone, on which laboratory ultrasonic velocities, texture and microstructures were investigated and quantified. The samples had different concentration of secondary mineral phases (< 5 up to 40 vol.%). Measured seismic P wave anisotropy ranges from 6.5% for polyphase mylonites (~ 40 vol.%) to 18.4% in mylonites with < 5 vol.% secondary phases. Texture strength of calcite is the main factor governing the seismic P wave anisotropy. Measured S wave splitting is generally highest in the foliation plane, but its origin is more difficult to explain solely by calcite texture. Additional texture measurements were made on calcite mylonites with low concentration of secondary phases (≤ 10 vol.%) along the metamorphic gradient of the shear zone (15 km distance). A systematic increase in texture strength is observed moving from the frontal part of the shear zone (anchimetamorphism; 280 °C) to the higher temperature, basal part (greenschist facies; 350–400 °C). Calculated P wave velocities become increasingly anisotropic towards the high-strain part of the nappe, from an average of 5.8% in the frontal part to 13.2% in the root of the basal part. Secondary phases raise an additional complexity, and may act either to increase or decrease seismic anisotropy of shear zone mylonites. In light of our findings we reinterpret the origin of some seismically reflective layers in the Grône–Zweisimmen line in southwestern Switzerland (PNR20 Swiss National Research Program). We hypothesize that reflections originate in part from the lateral variation in textural and microstructural arrangement of calcite mylonites in shear zones.

Surface "Waves" on Byrd Glacier, Antarctica

Byrd Glacier has one of the largest ice catchment areas in Antarctica, delivers more ice to the Ross Ice Shelf than any other ice stream, and is the fastest of these ice streams. A force balance, combined with a mass balance, demonstrates that stream flow in Byrd Glacier is transitional from sheet flow in East Antarctica to shelf flow in the Ross Ice Shelf. The longitudinal pulling stress, calculated along an ice flowband from the force balance, is linked to variations of ice thickness, to the ratio of the basal water pressure to the ice overburden pressure where Byrd Glacier is grounded, and is reduced by an ice-shelf buttressing stress where Byrd Glacier is floating. Longitudinal tension peaks at pressure-ratio maxima in grounded ice and close to minima in the ratio of the pulling stress to the buttressing stress in floating ice. The longitudinal spacing of these tension peaks is rather uniform and, for grounded ice, the peaks occur at maxima in surface slope that have no clear relation to the bed slope. This implies that the maxima in surface slope constitute a "wave train" that is related to regular variations in ice-bed coupling, not primarily to bed topography. It is unclear whether these surface "waves" are "standing waves" or are migrating either upslope or downslope, possibly causing the grounding line to either retreat or advance. Deciding which is the case will require obtaining bed topography in the map plane, a new map of surface topography, and more sophisticated modeling that includes ice flow linked to subglacial hydrology in the map plane.

Basal Melting Along the Floating Part of Byrd Glacier

A mass balance calculation was made for the floating part of Byrd Glacier, using 1978-79 ice elevation and velocity data, over the 45 km of Byrd Glacier from its grounding line to where it leaves its fjord and merges with the Ross Ice Shelf. Smoothed basal melting rates were relatively uniform over this distance and averaged 12 +/- 2 m yr(-1).

Calculating Basal Thermal Zones Beneath the Antarctic Ice Sheet

A procedure is presented for using a simple flowline model to calculate the fraction of the bed that is thawed beneath present-day ice sheets, and therefore for mapping thawed, frozen, melting and freezing basal thermal zones. The procedure is based on the proposition, easily demonstrated, that variations in surface slope along ice flowlines are due primarily to variations in bed topography and ice-bed coupling, where ice-bed coupling for sheet flow is represented by the basal thawed fraction. This procedure is then applied to the central flowlines of flow bands on the Antarctic ice sheet where accumulation rates, surface elevations and bed topography are mapped with sufficient accuracy, and where sheet flow rather than stream flow prevails. In East Antarctica, the usual condition is a low thawed fraction in subglacial highlands, but a high thawed fraction in subglacial basins and where ice converges on ice streams. This is consistent with a greater depression of the basal melting temperature and a slower rate of conducting basal heat to the surface where ice is thick, and greater basal frictional heat production where ice flow is fast, as expected for steady-state flow. This correlation is reduced or even reversed where steady-state flow has been disrupted recently, notably where ice-stream surges produced the Dibble and Dalton Iceberg Tongues, both of which are now stagnating. In West Antarctica, for ice draining into the Pine Island Bay polynya of the Amundsen Sea, the basal thawed fraction is consistent with a prolonged and ongoing surge of Pine Island Glacier and with a recently initiated surge of Thwaites Glacier. For ice draining into the Ross Ice Shelf, long ice streams extend nearly to the West Antarctic ice divide. Over the rugged bed topography near the ice divide, no correlation consistent with steady-state sheet flow exists between ice thickness and the basal thawed fraction. The bed is wholly thawed beneath ice streams, even where stream flow is slow. This is consistent with ongoing gravitational collapse of ice entering the Ross Sea embayment and with unstable flow in the ice streams.

Controls on the Basal Water Pressure in Subglacial Channels Near the Margin of the Greenland Ice Sheet

Assuming a channelized drainage system in steady state, we investigate the influence of enhanced surface melting on the water pressure in subglacial channels, compared to that of changes in conduit geometry, ice rheology and catchment variations. The analysis is carried out for a specific part of the western Greenland ice-sheet margin between 66 degrees N and 66 degrees 30' N using new high-resolution digital elevation models of the subglacial topography and the ice-sheet surface, based on an airborne ice-penetrating radar survey in 2003 and satellite repeat-track interferometric synthetic aperture radar analysis of European Remote-sensing Satellite 1 and 2 (ERS-1/-2) imagery, respectively. The water pressure is calculated up-glacier along a likely subglacial channel at distances of 1, 5 and 9 km from the outlet at the ice margin, using a modified version of Rothlisberger's equation. Our results show that for the margin of the western Greenland ice sheet, the water pressure in subglacial channels is not sensitive to realistic variations in catchment size and mean surface water input compared to small changes in conduit geometry and ice rheology.

Antenna Simulations and Measurements of Focal Plane Array Facet Reflectors

We present a conceptual prototype model of a focal plane array unit for the STEAMR instrument, highlighting the challenges presented by the required high relative beam proximity of the instrument and focus on how edge-diffraction effects contribute to the array's performance. The analysis was carried out as a comparative process using both PO & PTD and MoM techniques. We first highlight general differences between these computational techniques, with the discussion focusing on diffractive edge effects for near-field imaging reflectors with high truncation. We then present the results of in-depth modeling analyses of the STEAMR focal plane array followed by near-field antenna measurements of a breadboard model of the array. The results of these near-field measurements agree well with both simulation techniques although MoM shows slightly higher complex beam coupling to the measurements than PO & PTD.