Use of genetic algorithms and solvation potential to study peptides structure

In this work, genetic algorithms concepts along with a rotamer library for proteins side chains and implicit solvation potential are used to optimize the tertiary structure of peptides. We starting from the known PDB structure of its backbone which is kept fixed while the side chains allowed adopting the conformations present in the rotamer library. It was used rotamer library independent of backbone and a implicit solvation potential. The structure of Mastoporan-X was predicted using several force fields with a growing complexity; we started it with a field where the only present interaction was Lennard-Jones. We added the Coulombian term and we considered the solvation effects through a term proportional to the solvent accessible area. This paper present good and interesting results obtained using the potential with solvation term and rotamer library. Hence, the algorithm (called YODA) presented here can be a good tool to the prediction problem. (c) 2007 Elsevier B.V. All rights reserved.

Caste in the swarming wasps: 'queenless' societies in highly social insects

Morphometric data for 30 species of swarming wasps (Vespidae: Polistinae: Epiponini) are presented, representing all currently recognized genera. Data are coded according to whether females that were shown by dissection to be egglayers are larger, similar, or smaller for each dimension than non-egglayers. These data are analysed in a phylogenetic framework with primitively social Polistes and Mischocyttarus as outgroups. Representative measurements are illustrated to show that most genera of Epiponini appear to have ancestry in a lineage that has no queen caste comparable with either the primitively social outgroups, or the more derived species of the tribe. This analysis indicates that a conspiracy of workers that operates without a queen characterizes the societies of many Epiponini, or their recent ancestors. (c) 2008 The Linnean Society of London.

Observation and properties of the X(3872) decaying to J/psi pi(+)pi(-) in p(p)over-bar collisions at root s=1.96 TeV

We report the observation of the X(3872) in the J/psipi(+)pi(-) channel, with J/psi decaying to mu(+)mu(-), in p (p) over bar collisions at roots=1.96 TeV. Using approximately 230 pb(-1) of data collected with the Run II D0 detector, we observe 522+/-100 X(3872) candidates. The mass difference between the X(3872) state and the J/psi is measured to be 774.9+/-3.1(stat)+/-3.0(syst) MeV/c(2). We have investigated the production and decay characteristics of the X(3872) and find them to be similar to those of the psi(2S) state.

Small active and sterile neutrino masses from the TeV scale

A new mechanism for understanding small neutrino masses using only simple new physics at the TeV scale is proposed. As an application, it is shown how it can naturally lead to the mass hierarchy of the so-called bimaximal mixing in the case of three active neutrinos, or to the 3 + 1 scenario with a sterile neutrino, using only the SU(2)(L) quantum numbers of the particles. (C) 2001 Elsevier B.V. BN. All rights reserved.

Measurement of the normalized Z/gamma* -> mu(+)mu(-) transverse momentum distribution in p(p)over-bar collisions at root s=1.96 TeV

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Efeito analgésico de longa duração da dipirona sobre a hiperalgesia persistente induzida pela constrição do nervo ciático em ratos: participação do óxido nítrico

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Seed predation of Virola bicuhyba (Schott) Warb. (Myristicaceae) in the Atlantic forest of south-eastern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Crescimento do caranguejo de água doce, Dilocarcinus pagei Stimpson (Crustacea, Brachyura, Trichodactylidae)

A biologia de caranguejos de água doce tem sido pouco enfocada na literatura carcinológica, especialmente em relação ao crescimento das espécies da família Trichodactylidae. Este estudo visa determinar as curvas de crescimento em tamanho e peso, bem como a longevidade e a idade na muda pubertária dos caranguejos de água doce Dilocarcinus pagei Stimpson, 1861. As amostras foram obtidas mensalmente na Represa Municipal de São José do Rio Preto (São Paulo), de outubro/1994 a setembro/1996. Os indivíduos tiveram o sexo determinado, sendo também mensurados (LC = largura do cefalotórax) e pesados (PE = peso úmido). O crescimento dos indivíduos foi determinado pelo método de distribuição dos exemplares em classes de tamanho, sendo utilizado o programa FiSAT para a determinação das curvas através do ajuste não linear dos dados pelo modelo de Bertalanffy. Foram analisados 962 exemplares (534 machos e 428 fêmeas) e as curvas de crescimento em tamanho foram expressas pelas equações LC Machos = 61,7[1-e-0,97(t+0,041)] e LC Fêmeas = 57,1[1-e-1,41(t+0,031)], enquanto o crescimento em peso foi melhor representado por PE Machos = 65,2[1-e-0,97(t+0,041)]3,08 e PE Fêmeas = 44,9[1-e-1,41(t+0,031)]2,82. O tamanho assintótico dos machos (61,66 mm) foi pouco superior ao das fêmeas (57,09 mm), ocorrendo o inverso para a longevidade, estimada em 2,4 e 2,7 anos, respectivamente. O tamanho máximo estimado com base em 95% do tamanho assintótico foi de 58,6 mm para os machos e 54,2 mm para as fêmeas, valores muito próximos dos maiores tamanhos registrados na natureza para cada sexo (55,8 mm). A muda da puberdade dos machos ocorreu com idade superior à das fêmeas (tMachos = 1,2 anos e tFêmeas = 0,9 anos). Os resultados obtidos neste trabalho são inéditos na literatura carcinológica, sendo de grande valia no manejo populacional e preservação desta espécie, que vem sendo intensamente explorada e usada como isca na pesca esportiva.

Chromosomal similarity between the Scaly-headed parrot (Pionus maximiliani), the Short-tailed parrot (Graydidascalus brachyurus) and the Yellow-faced parrot (Salvatoria xanthops) (Psittaciformes: Aves): a cytotaxonomic analysis

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

The amphibian tree of life

The evidentiary basis of the currently accepted classification of living amphibians is discussed and shown not to warrant the degree of authority conferred on it by use and tradition. A new taxonomy of living amphibians is proposed to correct the deficiencies of the old one. This new taxonomy is based on the largest phylogenetic analysis of living Amphibia so far accomplished. We combined the comparative anatomical character evidence of Haas (2003) with DNA sequences from the mitochondrial transcription unit HI (12S and 16S ribosomal RNA and tRNA(Valine) genes, 2,400 bp of mitochondrial sequences) and the nuclear genes histone H3, rhodopsin, tyrosinase, and seven in absentia, and the large ribosomal subunit 28S (approximate to 2,300 bp of nuclear sequences; ca. 1.8 million base pairs; x ($) over bar = 3.7 kb/terminal). The dataset includes 532 terminals sampled from 522 species representative of the global diversity of amphibians as well as seven of the closest living relatives of amphibians for outgroup comparisons.

Metal-insulator transitions and magnetic ordered states in oxygen-depleted manganites

The use of AC/DC magnetic susceptibility and impedance measurements to detect oxygen depletion effects in La0.7Ca0.3MnO3 +/-delta and NiMn2O4+delta spinel-type compounds is reported. For the NiMn2O4, for which no Mn4+ was found, three superposed Debye relaxations were observed in the range 260-180 K. Otherwise, in La0.7Ca0.3MnO3, the argon annealed has contributed to a decrease in T-C, but the amount of Mn4+ is still too high to allow the observation of a relaxation in this frequency window. (c) 2006 Elsevier B.V. All rights reserved.

Evaluation of the isoflurane-sparing effects of lidocaine and fentanyl during surgery in dogs

Objective-To evaluate the isoflurane-sparing effects of lidocaine and fentanyl administered by constant rate infusion (CRI) during surgery in dogs.Design-Randomized prospective study.Animals-24 female dogs undergoing unilateral mastectomy because of mammary neoplasia.Procedures-After premedication with acepromazine and morphine and anesthetic induction with ketamine and diazepam, anesthesia in dogs (n = 8/group) was maintained with isoflurane combined with either saline (0.9% NaCl) solution (control), liclocaine (1.5 mg/kg [0.68 mg/lb], IV bolus, followed by 250 mu g/kg/min [113 mu g/lb/min], CRI), or fentanyl (5 mu g/kg [2.27 mu g/lb], IV bolus, followed by 0.5 mu g/kg/min [0.23 mu g/lb/min], CRI). Positive-pressure ventilation was used to maintain eucapnia. An anesthetist unaware of treatment, endtidal isoflurane (ETiso) concentration, and vaporizer concentrations adjusted a nonprecision vaporizer to maintain surgical depth of anesthesia. Cardiopulmonary variables and ETiso values were monitored before and after beginning surgery.Results-Heart rate was lower in the fentanyl group. Mean arterial pressure did not differ among groups after surgery commenced. In the control group, mean +/- SD ETiso values ranged from 1.16 +/- 0.35% to 1.94 +/- 0.96%. Fentanyl significantly reduced isoflurane requirements during surgical stimulation by 54% to 66%, whereas the reduction in ETiso concentration (34% to 44%) observed in the lidocaine group was not significant.Conclusions and Clinical Relevance-Administration of fentanyl resulted in greater isoflurane sparing effect than did liclocaine. However, it appeared that the low heart rate induced by fentanyl may partially offset the improvement in mean arterial pressure that would be expected with reduced isoflurane requirements.

Distribuição vertical, danos e controle cultural de Stenoma catenifer Walsingham (Lepidoptera: Elachistidae) em pomar de abacate

Stenoma catenifer Walsingham is the major pest in avocado groves (Persea americana Mill.) in the Neotropical region. Management has been difficult for many reasons related to the reduced knowledge on its bioecology and the avocado growing systems. The goal of this work was to study the vertical distribution of S. catenifer in avocado plants, the gagging effect of infested fruit on its survival, and the losses caused. The experiments were conducted in a commercial grove located at the Sao Tomas de Aquino, State of Minas Gerais, Brazil, during the 2001/2002 and 2002/2003 growing season. S. catenifer was observed especially at the lower and central part of the plant, and the inner canopy was the least attacked in comparison with the north, south, east and west quadrants. These results may be important indicators for the use of am adequate sampling procedure. The highest percentage of attacked fruit had one to four larvae; in some cases up to eight individuals per fruit were found. The losses caused by the borer varied during the agricultural season, with figures close to 5% in a single evaluation, and the harvest loss may reach 27%. The bagging of infested fruit caused mortality of S. catenifer, as observed through the evaluation carried out four days later.