Constrained peptidomimetics reveal detailed geometric requirements of covalent prolyl oligopeptidase inhibitors.

Prolyl oligopeptidases cleave peptides on the carboxy side of internal proline residues and their inhibition has potential in the treatment of human brain disorders. Using our docking program fitted, we have designed a series of constrained covalent inhibitors, built from a series of bicyclic scaffolds, to study the optimal shape required for these small molecules. These structures bear nitrile functional groups that we predicted to covalently bind to the catalytic serine of the enzyme. Synthesis and biological assays using human brain-derived astrocytic cells and endothelial cells and human fibroblasts revealed that these compounds act as selective inhibitors of prolyl oligopeptidase activity compared to prolyl-dipeptidyl-aminopeptidase activity, are able to penetrate the cells and inhibit intracellular activities in intact living cells. This integrated computational and experimental study shed light on the binding mode of inhibitors in the enzyme active site and will guide the design of future drug-like molecules.

A novel semi-fragile forensic watermarking scheme for remote sensing images

Peer-reviewed

Faba beans in diets for growing-finishing pigs

Selostus: Härkäpapu lihasikojen ruokinnassa

JXTA security in mobile constrained devices

JXME is the JXTA protocols implementation formobile devices using J2ME. Two different flavors of JXME have been implemented, each one specific for a particular set of devices, according to their capabilities. The main value of JXME is its simplicity to create peer-to-peer (P2P) applications in limited devices. In addition to assessing JXME functionalities, it is also important to realize the default security level provided. This paper presents a brief analysis of the current state of security in JXME, focusing on the JXME-Proxied version, identifies existing vulnerabilities and proposes further improvements in this field.

Genetic algorithm for sequencing in midex model non-permutation flowshops using constrained buffers

Este trabajo presenta un Algoritmo Genético (GA) del problema de secuenciar unidades en una línea de producción. Se tiene en cuenta la posibilidad de cambiar la secuencia de piezas mediante estaciones con acceso a un almacén intermedio o centralizado. El acceso al almacén además está restringido, debido al tamaño de las piezas.AbstractThis paper presents a Genetic Algorithm (GA) for the problem of sequencing in a mixed model non-permutation flowshop. Resequencingis permitted where stations have access to intermittent or centralized resequencing buffers. The access to a buffer is restricted by the number of available buffer places and the physical size of the products.

Spatial filtering for pilot-aided WCDMA systems: a semi-blind subspace approach

This paper proposes a spatial filtering technique forthe reception of pilot-aided multirate multicode direct-sequencecode division multiple access (DS/CDMA) systems such as widebandCDMA (WCDMA). These systems introduce a code-multiplexedpilot sequence that can be used for the estimation of thefilter weights, but the presence of the traffic signal (transmittedat the same time as the pilot sequence) corrupts that estimationand degrades the performance of the filter significantly. This iscaused by the fact that although the traffic and pilot signals areusually designed to be orthogonal, the frequency selectivity of thechannel degrades this orthogonality at hte receiving end. Here,we propose a semi-blind technique that eliminates the self-noisecaused by the code-multiplexing of the pilot. We derive analyticallythe asymptotic performance of both the training-only andthe semi-blind techniques and compare them with the actual simulatedperformance. It is shown, both analytically and via simulation,that high gains can be achieved with respect to training-onlybasedtechniques.

Drosophila rely on learning while foraging under semi-natural conditions

Learning is predicted to affect manifold ecological and evolutionary processes, but the extent to which animals rely on learning in nature remains poorly known, especially for short-lived non-social invertebrates. This is in particular the case for Drosophila, a favourite laboratory system to study molecular mechanisms of learning. Here we tested whether Drosophila melanogaster use learned information to choose food while free-flying in a large greenhouse emulating the natural environment. In a series of experiments flies were first given an opportunity to learn which of two food odours was associated with good versus unpalatable taste; subsequently, their preference for the two odours was assessed with olfactory traps set up in the greenhouse. Flies that had experienced palatable apple-flavoured food and unpalatable orange-flavoured food were more likely to be attracted to the odour of apple than flies with the opposite experience. This was true both when the flies first learned in the laboratory and were then released and recaptured in the greenhouse, and when the learning occurred under free-flying conditions in the greenhouse. Furthermore, flies retained the memory of their experience while exploring the greenhouse overnight in the absence of focal odours, pointing to the involvement of consolidated memory. These results support the notion that even small, short lived insects which are not central-place foragers make use of learned cues in their natural environments.

Feijão guandu cru na alimentação de frangos caipiras criados em sistema semi-intensivo

O objetivo deste trabalho foi avaliar os efeitos da substituição do farelo de soja pelo feijão guandu cru na alimentação de frangos caipiras criados em sistema semi-intensivo. Foram utilizados 525 frangos de corte da linhagem Caipira Pesadão, com idade inicial de 35 dias, distribuídos em cinco tratamentos com cinco repetições de 21 aves cada um. Os tratamentos consistiram na substituição de 0, 5, 10, 15 e 20% do farelo de soja pelo feijão guandu cru moído. Foram avaliados o ganho de peso, o consumo de ração, a conversão alimentar, o rendimento de carcaça e de cortes, o peso do pâncreas e a qualidade da carne. A substituição do farelo de soja pelo feijão guandu em até 15,45%, nas dietas de frangos caipiras de corte, com idade de 57 a 71 dias, não altera o ganho de peso. O aumento dos níveis de feijão guandu na ração não afeta o rendimento de carcaça, o peso do pâncreas e os parâmetros de qualidade da carne.

RELAÇÕES HÍDRICAS INTERNAS DO UMBUZEIRO SOB CONDIÇÕES SEMI-ÁRIDAS

Realizou-se um estudo na Embrapa-Centro de Pesquisa Agropecuária do Trópico Semi-Árido (CPATSA), Petrolina-PE, objetivando identificar os mecanismos, através dos quais o umbuzeiro (Spondias tuberosa Arr. Cam.) mantém o balanço hídrico interno durante as estações de seca e chuvosa. Os resultados obtidos basearam-se em observações do potencial hídrico e de seus componentes, utilizando-se da câmara de pressão e câmaras higrométricas / microvoltímetro. Sob condições de seca, os valores mais baixos de potencial hídrico e potencial osmótico foram observados em torno das 8 h, atingindo, respectivamente --0,97 MPa e --1,17 MPa, resultando em uma pressão de turgor de 0,2 MPa. A pressão mais baixa ocorreu às 16 h, atingindo 0,16 MPa. Entretanto, a recuperação hídrica não foi observada, até o final dia. Durante a estação chuvosa, os valores de mais baixos de potencial hídrico foram obtidos às 14 h , quando foram detectados, respectivamente --1,55 MPa. Neste momento, o potencial osmótico atingiu --1,57 MPa , culminando com uma pressão de turgor de 0,02 MPa. Entretanto, até o final do dia, a condição hídrica da planta foi similar à observada no início do dia. Estes resultados sugerem que o umbuzeiro apresenta duas estratégias para manter, durante o dia, um balanço hídrico interno favorável, dentro das condições ambientais estudadas. Sob condições de sequeiro, o balanço seria mantido através da utilização da água armazenada nas túberas e uma baixa transpiração. Durante a estação das chuvas, o balanço hídrico pode ter sido mediado por um ajuste osmótico, a julgar pelas variações observadas à tarde entre níveis de potencial hídrico e potencial osmótico.

In conditions of limited chromophore supply rods entrap 11-cis-retinal leading to loss of cone function and cell death.

RPE65 is a retinoid isomerase required for the production of 11-cis-retinal, the chromophore of both cone and rod visual pigments. We recently established an R91W knock-in mouse strain as homologous animal model for patients afflicted by this mutation in RPE65. These mice have impaired vision and can only synthesize minute amounts of 11-cis-retinal. Here, we investigated the consequences of this chromophore insufficiency on cone function and pathophysiology. We found that the R91W mutation caused cone opsin mislocalization and progressive geographic cone atrophy. Remnant visual function was mostly mediated by rods. Ablation of rod opsin corrected the localization of cone opsin and improved cone retinal function. Thus, our analyses indicate that under conditions of limited chromophore supply rods and cones compete for 11-cis-retinal that derives from regeneration pathway(s) which are reliant on RPE65. Due to their higher number and the instability of cone opsin, rods are privileged under this condition while cones suffer chromophore deficiency and degenerate. These findings reinforce the notion that in patients any effective gene therapy with RPE65 needs to target the cone-rich macula directly to locally restore the cones' chromophore supply outside the reach of rods.

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.

MOTIVATION: Comparative analyses of gene expression data from different species have become an important component of the study of molecular evolution. Thus methods are needed to estimate evolutionary distances between expression profiles, as well as a neutral reference to estimate selective pressure. Divergence between expression profiles of homologous genes is often calculated with Pearson's or Euclidean distance. Neutral divergence is usually inferred from randomized data. Despite being widely used, neither of these two steps has been well studied. Here, we analyze these methods formally and on real data, highlight their limitations and propose improvements. RESULTS: It has been demonstrated that Pearson's distance, in contrast to Euclidean distance, leads to underestimation of the expression similarity between homologous genes with a conserved uniform pattern of expression. Here, we first extend this study to genes with conserved, but specific pattern of expression. Surprisingly, we find that both Pearson's and Euclidean distances used as a measure of expression similarity between genes depend on the expression specificity of those genes. We also show that the Euclidean distance depends strongly on data normalization. Next, we show that the randomization procedure that is widely used to estimate the rate of neutral evolution is biased when broadly expressed genes are abundant in the data. To overcome this problem, we propose a novel randomization procedure that is unbiased with respect to expression profiles present in the datasets. Applying our method to the mouse and human gene expression data suggests significant gene expression conservation between these species. CONTACT: marc.robinson-rechavi@unil.ch; sven.bergmann@unil.ch SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

International bioenergy trade- scenario study on international biomass market in 2020

The markets of biomass for energy are developing rapidly and becoming more international. A remarkable increase in the use of biomass for energy needs parallel and positive development in several areas, and there will be plenty of challenges to overcome. The main objective of the study was to clarify the alternative future scenarios for the international biomass market until the year 2020, and based on the scenario process, to identify underlying steps needed towards the vital working and sustainable biomass market for energy purposes. Two scenario processes were conducted for this study. The first was carried out with a group of Finnish experts and thesecond involved an international group. A heuristic, semi-structured approach, including the use of preliminary questionnaires as well as manual and computerised group support systems (GSS), was applied in the scenario processes.The scenario processes reinforced the picture of the future of international biomass and bioenergy markets as a complex and multi-layer subject. The scenarios estimated that the biomass market will develop and grow rapidly as well as diversify in the future. The results of the scenario process also opened up new discussion and provided new information and collective views of experts for the purposes of policy makers. An overall view resulting from this scenario analysis are the enormous opportunities relating to the utilisation of biomass as a resource for global energy use in the coming decades. The scenario analysis shows the key issues in the field: global economic growth including the growing need for energy, environmental forces in the global evolution, possibilities of technological development to solve global problems, capabilities of the international community to find solutions for global issues and the complex interdependencies of all these driving forces. The results of the scenario processes provide a starting point for further research analysing the technological and commercial aspects related the scenarios and foreseeing the scales and directions of biomass streams.

Estudi de les estratègies comportamentals dels gripau corredor (Bufo Calamita) a la zona semi-àrida de Mas de Melons (terme municipal de Lleida) durant l'hivern i principis de primavera del 2007

En aquest treball s’han radiomarcat, un total de 4 gripaus corredors (Bufo calamita) que posteriorment foren alliberats a la Bassa de l’Astor, per tal d’estudiar les estratègies comportamentals de l’espècie en una zona semi-àrida. Dels 4 animals alliberats, un es perdé als pocs dies, la resta foren seguits mitjançant radioseguiment uns 64 dies, entre finals d’hivern i principis de primavera del 2007. En el treball de seguiment s’anotà en cada una de les localitzacions la temperatura ambiental del moment i la freqüència a la qual emetia l’emissor. Donat que es tenien els emissors calibrats, a partir d’aquesta freqüència es podia obtenir la temperatura a la qual es trobava l’emissor, és a dir la temperatura corporal del gripau en aquest cas. Mitjançant programes estadístics s’ha pogut determinar que durant el període hivernal i principis de primavera existeix una relació estadísticament significativa entre la variació de la temperatura ambiental i la temperatura corporal dels gripaus. Aquesta relació no es dona però en el període estival. Això fa pensar que el comportament del calamita esdevé una forma de termoregulació actuant per tal d’evitar extrems crítics de temperatura i humitat. S’ha pogut determinar també que gràcies a les característiques dels refugis utilitzats en la zona d’estudi (munts de pedres o caus d’altres espècies) els gripaus aconsegueixen mantenir-se en ambients on la variació de temperatura és inferior a la variació de la temperatura exterior. Així la variació de la temperatura corporal dels gripaus és també inferior. Pel que fa als moviments entre els diferents refugis, aquests han variat en funció de cada animal. La distància mitja recorreguda en el total dels desplaçaments ha estat d’uns 185 metres lineals. Aquests desplaçaments s’han donat sempre en dies de pluja o l’endemà d’un dia de pluja.