Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome

Metagenomics has been widely employed for discovery of new enzymes and pathways to conversion of lignocellulosic biomass to fuels and chemicals. In this context, the present study reports the isolation, recombinant expression, biochemical and structural characterization of a novel endoxylanase family GH10 (SCXyl) identified from sugarcane soil metagenome. The recombinant SCXyl was highly active against xylan from beechwood and showed optimal enzyme activity at pH 6,0 and 45°C. The crystal structure was solved at 2.75 Å resolution, revealing the classical (β/α)8-barrel fold with a conserved active-site pocket and an inherent flexibility of the Trp281-Arg291 loop that can adopt distinct conformational states depending on substrate binding. The capillary electrophoresis analysis of degradation products evidenced that the enzyme displays unusual capacity to degrade small xylooligosaccharides, such as xylotriose, which is consistent to the hydrophobic contacts at the +1 subsite and low-binding energies of subsites that are distant from the site of hydrolysis. The main reaction products from xylan polymers and phosphoric acid-pretreated sugarcane bagasse (PASB) were xylooligosaccharides, but, after a longer incubation time, xylobiose and xylose were also formed. Moreover, the use of SCXyl as pre-treatment step of PASB, prior to the addition of commercial cellulolytic cocktail, significantly enhanced the saccharification process. All these characteristics demonstrate the advantageous application of this enzyme in several biotechnological processes in food and feed industry and also in the enzymatic pretreatment of biomass for feedstock and ethanol production. © 2013 Alvarez et al.

Isolamento de linhagens microbianas termofílicas amilolíticas, produção, caracterização e aplicação das amilases na hidrólise do amido de mandioca

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Caracterização de impacto ambiental no solo em um aterro de pequeno porte

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Composição florística, estrutura e heterogeneidade ambiental da comunidade arbórea de uma várzea em Porto Ferreira, SP, Brasil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Effect of fructooligosaccharides on the physicochemical properties of sour cassava starch and baking quality of gluten-free cheese bread

The present research was undertaken to explore the influence of fructooligosaccharides (FOS) on the functional and thermal properties of sour cassava starch and the quality characteristics of gluten-free (GF) cheese bread. Fructooligosaccharides were used to replace sour cassava starch at substitution level of 9% (SF1), 17% (SF2), and 29% (SF3). The functional and thermal properties of the starch-FOS mixtures were determined by the water absorption index (WAI), water solubility index (WSI), pasting profile analysis, thermal transition temperatures and enthalpy of gelatinization. Moreover, the GF cheese breads with starch-FOS mixtures were analyzed for height, diameter, weight, specific volume and dough moisture content. The sample with the highest FOS content (SF3) presented the lowest WAI (1.44), peak (62.4 rapid visco units (RVU), breakdown (53.4 RVU), final (13.8 RVU), and setback (4.9 RVU) viscosities, dough moisture content (31.7%), and enthalpy of gelatinization (9.5 J/g) and the highest WSI (29.4%) and pasting temperature (69.1 degrees C). The height, diameter and specific volume of GF cheese bread samples made from sour cassava starch were 3.14 cm, 6.35 cm, and 1.49 cm(3)/g, respectively. The SF1 mixture samples resulted in a 3.01 cm height, 6.34 cm diameter, and 1.55 cm(3)/g specific volume. According to Brazilian food labeling regulations, the latter product cannot be categorized as a good source of fiber because the minimum level of fiber per portion was not reached.

Phosphorus fertilization of 'Fuyutoyo' cabbages in phosphorus-rich Eutrustox soil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Sporothrix schenckii sensu stricto Isolated from Soil in an Armadillo's Burrow

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The chemical properties of soil for alfalfa production after biofertiliser application

The objective of this study was to evaluate the use of biofertilisers for the production of alfalfa shoot, root and nodule dry matter, and also, to evaluate the chemical properties of the soil. This study was conducted in the greenhouse of the Support Department, Animal Production and Health, Faculty of Veterinary Medicine/UNESP, Aracatuba - SP, from May to October 2010. The experimental design was completely randomised with six biofertiliser doses (0, 25, 50, 100, 200 and 400 m(3) ha(-1)) and five replicates. The biofertiliser doses were the primary treatments and the cuts (five) were subplots. The cuts were performed, on average, every 27 days at 10 cm above the soil. At the end of the experiment, the roots, nodules and soil from all experimental units were collected for chemical analysis. We observed a linear increase in dry matter production of the shoots relative to the doses studied. The dry matter production of the roots and nodules was not significantly different. The chemical properties of the soil significantly improved for calcium and magnesium as well as the sum of bases and base saturation with biofertiliser application. Biofertilisers can be used for agricultural production and favourably alter the soil characteristics.

A new approach to soil classification mapping based on the spatial distribution of soil properties

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

The Influence of Municipal Treated Wastewater on Morpho-Physiological Characteristics of Eucalyptus Plants

The effects of municipal-treated wastewater on growth and gas exchange characteristics were studied in eucalyptus plants cultivated in a greenhouse under continuous sub irrigation with 70 % Long Ashton solution as a control, 100 % treated wastewater, and treated wastewater diluted 50 % with tap water. Irrigation with wastewater resulted in a reduction of total dry matter per plant and the shoot-to-root ratio and increased specific leaf mass, irrespective of the dilution. The gas exchange characteristics were adversely affected by the irrigation with wastewater, with photosynthetic rates been negatively affected. Total chlorophyll and carotenoids content were reduced in plants grown under treated wastewater. The results demonstrated that when the eucalyptus plants were grown under treated wastewater as the only source of mineral nutrients they were able to produce nearly 50 % of the dry matter produced by the plants grown under appropriate mineral nutrient supply, irrespective of the dilution. Therefore, the contribution of mineral nutrients and organic matter from the treated wastewater used as agricultural irrigation will be significant in lower the fertilizer rates without reducing dry matter production per plant.

Analysing the fate of nanopesticides in soil and the applicability of regulatory protocols using a polymer-based nanoformulation of atrazine

For the first time, regulatory protocols defined in the OECD guidelines were applied to determine the fate properties of a nanopesticide in two agricultural soils with contrasting characteristics. The nanoformulation studied had no effect on the degradation kinetics of atrazine indicating that (1) the release of atrazine from the polymer nanocarriers occurred rapidly relative to the degradation kinetics (half-lives 36-53 days) and/or that (2) atrazine associated with the nanocarriers was subject to biotic or abiotic degradation. Sorption coefficients, derived from a batch and a centrifugation technique at a realistic soil-to-solution ratio, were higher for the nanoformulated atrazine than for the pure active ingredient. Results indicate that the nanoformulation had an effect on the fate of atrazine. However, since the protocols applied were designed to assess solutes, conclusions about the transport of atrazine loaded onto the nanocarriers should be made extremely cautiously. The centrifugation method applied over time (here over 7 days) appears to be a useful tool to indirectly assess the durability of nanopesticides under realistic soil-to-solution ratios and estimate the period of time during which an influence on the fate of the active ingredient may be expected. More detailed investigations into the bioavailability and durability of nanopesticides are necessary and will require the development of novel methods suitable to address both the "nano" and "organic" characteristics of polymer-based nanopesticides.

Niobium pentoxide as radiopacifying agent of calcium silicate-based material: evaluation of physicochemical and biological properties

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Organic farm does not improve neither soil, or water quality in rural watersheds from southeastern Brazil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Biodegradation of PP and PE blended with PHBV in soil samples

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Off-line TMAH-GC/MS and NMR characterization of humic substances extracted from river sediments of northwestern Sao Paulo under different soil uses

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)