Discovering similarities in the time use patterns of the Spanish Autonomous Communities by Fuzzy techniques

In 2000 the European Statistical Office published the guidelines for developing theHarmonized European Time Use Surveys system. Under such a unified framework,the first Time Use Survey of national scope was conducted in Spain during 2002–03. The aim of these surveys is to understand human behavior and the lifestyle ofpeople. Time allocation data are of compositional nature in origin, that is, they aresubject to non-negativity and constant-sum constraints. Thus, standard multivariatetechniques cannot be directly applied to analyze them. The goal of this work is toidentify homogeneous Spanish Autonomous Communities with regard to the typicalactivity pattern of their respective populations. To this end, fuzzy clustering approachis followed. Rather than the hard partitioning of classical clustering, where objects areallocated to only a single group, fuzzy method identify overlapping groups of objectsby allowing them to belong to more than one group. Concretely, the probabilistic fuzzyc-means algorithm is conveniently adapted to deal with the Spanish Time Use Surveymicrodata. As a result, a map distinguishing Autonomous Communities with similaractivity pattern is drawn.Key words: Time use data, Fuzzy clustering; FCM; simplex space; Aitchison distance

Studies in stoichiometry with compositional data

Geochemical data that is derived from the whole or partial analysis of various geologic materialsrepresent a composition of mineralogies or solute species. Minerals are composed of structuredrelationships between cations and anions which, through atomic and molecular forces, keep the elementsbound in specific configurations. The chemical compositions of minerals have specific relationships thatare governed by these molecular controls. In the case of olivine, there is a well-defined relationshipbetween Mn-Fe-Mg with Si. Balances between the principal elements defining olivine composition andother significant constituents in the composition (Al, Ti) have been defined, resulting in a near-linearrelationship between the logarithmic relative proportion of Si versus (MgMnFe) and Mg versus (MnFe),which is typically described but poorly illustrated in the simplex.The present contribution corresponds to ongoing research, which attempts to relate stoichiometry andgeochemical data using compositional geometry. We describe here the approach by which stoichiometricrelationships based on mineralogical constraints can be accounted for in the space of simplicialcoordinates using olivines as an example. Further examples for other mineral types (plagioclases andmore complex minerals such as clays) are needed. Issues that remain to be dealt with include thereduction of a bulk chemical composition of a rock comprised of several minerals from which appropriatebalances can be used to describe the composition in a realistic mineralogical framework. The overallobjective of our research is to answer the question: In the cases where the mineralogy is unknown, arethere suitable proxies that can be substituted?Kew words: Aitchison geometry, balances, mineral composition, oxides

Diagnosing Patients Combining Principal Components Analysis and Case Based Reasoning

This paper addresses the application of a PCA analysis on categorical data prior to diagnose a patients data set using a Case-Based Reasoning (CBR) system. The particularity is that the standard PCA techniques are designed to deal with numerical attributes, but our medical data set contains many categorical data and alternative methods as RS-PCA are required. Thus, we propose to hybridize RS-PCA (Regular Simplex PCA) and a simple CBR. Results show how the hybrid system produces similar results when diagnosing a medical data set, that the ones obtained when using the original attributes. These results are quite promising since they allow to diagnose with less computation effort and memory storage

Monitoring procedures in environmental geochemistry and compositional data analysis theory

First discussion on compositional data analysis is attributable to Karl Pearson, in 1897. However, notwithstanding the recent developments on algebraic structure of the simplex, more than twenty years after Aitchison’s idea of log-transformations of closed data, scientific literature is again full of statistical treatments of this type of data by using traditional methodologies. This is particularly true in environmental geochemistry where besides the problem of the closure, the spatial structure (dependence) of the data have to be considered. In this work we propose the use of log-contrast values, obtained by asimplicial principal component analysis, as LQGLFDWRUV of given environmental conditions. The investigation of the log-constrast frequency distributions allows pointing out the statistical laws able togenerate the values and to govern their variability. The changes, if compared, for example, with the mean values of the random variables assumed as models, or other reference parameters, allow definingmonitors to be used to assess the extent of possible environmental contamination. Case study on running and ground waters from Chiavenna Valley (Northern Italy) by using Na+, K+, Ca2+, Mg2+, HCO3-, SO4 2- and Cl- concentrations will be illustrated

The chemical variability at the surface of Mars: implications for exogenic processes

The chemical composition of sediments and rocks, as well as their distribution at theMartian surface, represent a long term archive of processes, which have formed theplanetary surface. A survey of chemical compositions by means of Compositional DataAnalysis represents a valuable tool to extract direct evidence for weathering processesand allows to quantify weathering and sedimentation rates. clr-biplot techniques areapplied for visualization of chemical relationships across the surface (“chemical maps”).The variability among individual suites of data is further analyzed by means of clr-PCA,in order to extract chemical alteration vectors between fresh rocks and their crusts andfor an assessment of different source reservoirs accessible to soil formation. Bothtechniques are applied to elucidate the influence of remote weathering by combinedanalysis of several soil forming branches. Vector analysis in the Simplex provides theopportunity to study atmosphere surface interactions, including the role andcomposition of volcanic gases

Quantifying rock fabrics: a test of autocorrelation of the spatial distribution of cristals

A novel test of spatial independence of the distribution of crystals or phases in rocksbased on compositional statistics is introduced. It improves and generalizes the commonjoins-count statistics known from map analysis in geographic information systems.Assigning phases independently to objects in RD is modelled by a single-trial multinomialrandom function Z(x), where the probabilities of phases add to one and areexplicitly modelled as compositions in the K-part simplex SK. Thus, apparent inconsistenciesof the tests based on the conventional joins{count statistics and their possiblycontradictory interpretations are avoided. In practical applications we assume that theprobabilities of phases do not depend on the location but are identical everywhere inthe domain of de nition. Thus, the model involves the sum of r independent identicalmultinomial distributed 1-trial random variables which is an r-trial multinomialdistributed random variable. The probabilities of the distribution of the r counts canbe considered as a composition in the Q-part simplex SQ. They span the so calledHardy-Weinberg manifold H that is proved to be a K-1-affine subspace of SQ. This isa generalisation of the well-known Hardy-Weinberg law of genetics. If the assignmentof phases accounts for some kind of spatial dependence, then the r-trial probabilitiesdo not remain on H. This suggests the use of the Aitchison distance between observedprobabilities to H to test dependence. Moreover, when there is a spatial uctuation ofthe multinomial probabilities, the observed r-trial probabilities move on H. This shiftcan be used as to check for these uctuations. A practical procedure and an algorithmto perform the test have been developed. Some cases applied to simulated and realdata are presented.Key words: Spatial distribution of crystals in rocks, spatial distribution of phases,joins-count statistics, multinomial distribution, Hardy-Weinberg law, Hardy-Weinbergmanifold, Aitchison geometry

The HVEM network: new directions in targeting novel costimulatory/co-inhibitory molecules for cancer therapy.

The regulation of the immune system is controlled by many cell surface receptors. A prominent representative is the 'molecular switch' HVEM (herpes virus entry mediator) that can activate either proinflammatory or inhibitory signaling pathways. HVEM ligands belong to two distinct families: the TNF-related cytokines LIGHT and lymphotoxin-α, and the Ig-related membrane proteins BTLA and CD160. HVEM and its ligands have been involved in the pathogenesis of various autoimmune and inflammatory diseases, but recent reports indicate that this network may also be involved in tumor progression and resistance to immune response. Here we summarize the recent advances made regarding the knowledge on HVEM and its ligands in cancer cells, and their potential roles in tumor progression and escape to immune responses. Blockade or enhancement of these pathways may help improving cancer therapy.

The HVEM network: new directions in targeting novel costimulatory/co-inhibitory molecules for cancer therapy.

The regulation of the immune system is controlled by many cell surface receptors. A prominent representative is the 'molecular switch' HVEM (herpes virus entry mediator) that can activate either proinflammatory or inhibitory signaling pathways. HVEM ligands belong to two distinct families: the TNF-related cytokines LIGHT and lymphotoxin-α, and the Ig-related membrane proteins BTLA and CD160. HVEM and its ligands have been involved in the pathogenesis of various autoimmune and inflammatory diseases, but recent reports indicate that this network may also be involved in tumor progression and resistance to immune response. Here we summarize the recent advances made regarding the knowledge on HVEM and its ligands in cancer cells, and their potential roles in tumor progression and escape to immune responses. Blockade or enhancement of these pathways may help improving cancer therapy.

Intraocular penetration of penciclovir after oral administration of famciclovir: a population pharmacokinetic model.

OBJECTIVES: We developed a population model that describes the ocular penetration and pharmacokinetics of penciclovir in human aqueous humour and plasma after oral administration of famciclovir. METHODS: Fifty-three patients undergoing cataract surgery received a single oral dose of 500 mg of famciclovir prior to surgery. Concentrations of penciclovir in both plasma and aqueous humour were measured by HPLC with fluorescence detection. Concentrations in plasma and aqueous humour were fitted using a two-compartment model (NONMEM software). Inter-individual and intra-individual variabilities were quantified and the influence of demographics and physiopathological and environmental variables on penciclovir pharmacokinetics was explored. RESULTS: Drug concentrations were fitted using a two-compartment, open model with first-order transfer rates between plasma and aqueous humour compartments. Among tested covariates, creatinine clearance, co-intake of angiotensin-converting enzyme inhibitors and body weight significantly influenced penciclovir pharmacokinetics. Plasma clearance was 22.8 ± 9.1 L/h and clearance from the aqueous humour was 8.2 × 10(-5) L/h. AUCs were 25.4 ± 10.2 and 6.6 ± 1.8 μg · h/mL in plasma and aqueous humour, respectively, yielding a penetration ratio of 0.28 ± 0.06. Simulated concentrations in the aqueous humour after administration of 500 mg of famciclovir three times daily were in the range of values required for 50% growth inhibition of non-resistant strains of the herpes zoster virus family. CONCLUSIONS: Plasma and aqueous penciclovir concentrations showed significant variability that could only be partially explained by renal function, body weight and comedication. Concentrations in the aqueous humour were much lower than in plasma, suggesting that factors in the blood-aqueous humour barrier might prevent its ocular penetration or that redistribution occurs in other ocular compartments.

Aitchison Geometry for Probability and Likelihood as a new approach to mathematical statistics

The Aitchison vector space structure for the simplex is generalized to a Hilbert space structure A2(P) for distributions and likelihoods on arbitrary spaces. Centralnotations of statistics, such as Information or Likelihood, can be identified in the algebraical structure of A2(P) and their corresponding notions in compositional data analysis, such as Aitchison distance or centered log ratio transform.In this way very elaborated aspects of mathematical statistics can be understoodeasily in the light of a simple vector space structure and of compositional data analysis. E.g. combination of statistical information such as Bayesian updating,combination of likelihood and robust M-estimation functions are simple additions/perturbations in A2(Pprior). Weighting observations corresponds to a weightedaddition of the corresponding evidence.Likelihood based statistics for general exponential families turns out to have aparticularly easy interpretation in terms of A2(P). Regular exponential families formfinite dimensional linear subspaces of A2(P) and they correspond to finite dimensionalsubspaces formed by their posterior in the dual information space A2(Pprior).The Aitchison norm can identified with mean Fisher information. The closing constant itself is identified with a generalization of the cummulant function and shown to be Kullback Leiblers directed information. Fisher information is the local geometry of the manifold induced by the A2(P) derivative of the Kullback Leibler information and the space A2(P) can therefore be seen as the tangential geometry of statistical inference at the distribution P.The discussion of A2(P) valued random variables, such as estimation functionsor likelihoods, give a further interpretation of Fisher information as the expected squared norm of evidence and a scale free understanding of unbiased reasoning

Revision of the Neotropical Xanthandrus Verral (Diptera, Syrphidae)

The Neotropical genus Xanthandrus Verral, 1901 is revised. Six species are redescribed: X. bucephalus (Wiedemann, 1830), X. cubanus Fluke, 1936, X. mellinoides (Macquart, 1846), X. mexicanus Curran, 1930, X. nitidulus Fluke, 1937, and X. plaumanni Fluke, 1937. Three species are included based on original descriptions: X. flavomaculatus Shannon, 1927, X. palliatus (Fluke, 1945), and X. simplex (Loew, 1861). New synonyms proposed: Argentinomyia longicornis (Walker, 1837) = Xanthandrus biguttatus Hull, 1945 syn. nov., and Xanthandrus bucephalus (Wiedemann, 1830) = Melanostoma quadrinotata Bigot, 1884 syn. nov. Description of terminalia, a key for Neotropical species, and illustrations are also presented.

Novas espécies e nota sobre Lamiinae (Coleoptera, Cerambycidae) neotropicais da coleção Arriagada, Santiago, Chile

New species described: Acanthoderini - Acanthoderes (Psapharochrus) piraiuba sp. nov.from Argentina (San Luis); Acanthoderes (Acanthoderes) uyapensis sp. nov. from Bolivia (La Paz); Dufauxia simplex sp. nov. from Paraguay (Caazapá); Aerenicini - Antodice quadrimaculata sp. nov. from Paraguay (Caazapá); Calliini - Drycothaea maculata sp. nov. from Bolivia (La Paz); Falsamblesthiini - Obereoides antennatus sp. nov. from Bolívia (La Paz). Color variation of Phoebe spegazzinii Bruch, 1908 is discussed.

O gênero Apenesia (Hymenoptera, Bethylidae) na Mata Atlântica: notas e descrição de sete espécies novas

Foram estudadas as espécies de Apenesia Westwood, coletadas em 29 localidades ao longo de um gradiente latitudinal na Mata Atlântica. Foram descritas e ilustradas as sete espécies novas seguintes: Apenesia pectinata sp. nov., A. atlantica sp. nov., A. perlonga sp. nov., A. exigua sp. nov., A. patens sp. nov., A. simplex sp. nov., A. hepatica sp. nov.. Foi descoberta e descrita a fêmea de Apenesia elongata Evans, 1963. Foram adicionados registros novos de distribuição geográfica de quatorze espécies previamente descritas: A. apicilata Azevedo & Batista, A. aurita Waichert & Azevedo, A. clypeata Leal & Azevedo, A. concavata Corrêa & Azevedo, A. crenutala (Kieffer), A. distincta Corrêa & Azevedo, A. elongata Evans, A. inca Evans, A. neotropica (Kieffer), A. photophila (Ogloblin), A. quadrata Evans, A. spinipes Evans, A. stricta Corrêa & Azevedo e A. transversa Evans. Apenesia é registrada pela primeira vez para os estados de Paraíba, Pernambuco, Alagoas, Sergipe e Bahia.

Revisão das espécies de Ceroplastinae Atkinson (Hemiptera, Coccoidea, Coccidae) do Estado de São Paulo, Brasil

As espécies de Ceroplastinae (Hemiptera, Coccoidea, Coccidae) que ocorrem no Estado de São Paulo são revisadas. São estudadas 36 espécies de Ceroplastinae, das quais 9 são sinonimizadas, 8 espécies novas são descritas e 19 são redescritas. Ceroplastes campinensis Hempel, 1901, C. bicolor Hempel, 1901, C. excaericae Hempel, 1912 e C. farmairii (Signoret, 1866), mencionadas para o Estado de São Paulo, não foram examinadas, devido a não localização do material tipo ou de outros exemplares. Nossos estudos indicaram que C. albolineatus Cockerell, 1894 e C. confluens Cockerell & Tinsley, 1898 foram erroneamente citadas por Hempel, 1900 para o estado de São Paulo. Coccus stellifer Westwood, 1871, atualmente Vinsonia stellifera (Westwood, 1871), é transferida para gênero Ceroplastes como Ceroplastes stellifer (Westwood, 1871) n. comb. C. flosculoides Matile-Ferrero, 1993 é registrada pela primeira vez para o país e C. cassiae (Chavannes, 1848), C. deodorensis Hempel, 1937, C. formosus Hempel, 1900 e C. quadratus Green, 1935 são registradas pela primeira vez no Estado de São Paulo. Ceroplastinae é agora representada por 31 espécies no Estado de São Paulo, todas incluídas no gênero Ceroplastes. Ilustrações e uma chave para espécies são incluídas. Novos sinônimos: C. formicarius Hempel = Ceroplastes communis Hempel, 1900 n. sin.; C. janeirensis Gray, 1828 = Ceroplastes psidii (Chavannes, 1848) n. sin. = C. simplex Hempel, 1900 n. sin.; C. cirripediformis Comstock, 1881 = C. cultus Hempel, 1900 n. sin. = C. cuneatus Hempel, 1900 n. sin. = C. rarus Hempel, 1900 n. sin e C. rotundus Hempel, 1900 n. sin.; C. lucidus Hempel, 1900 = C. novaesi Hempel, 1900 n. sin.; C. grandis Hempel, 1900 = C. rhizophorae Hempel, 1918 n. sin. Novas espécies descritas: C. acutus sp. nov.; C. bragai sp. nov.; C. coronatus sp. nov; C. glomeratus sp. nov; C. jordanensis sp. nov.; C. minimus sp. nov.; C. solanaceus sp. nov.; C. willinkae sp. nov. Espécies redescritas: C. agrestis Hempel, 1932; C. cassiae (Chavannes, 1848); C. cirripediformis; C. deodorensis Hempel, 1900; C. diospyros Hempel, 1928; C. floridensis Comstock, 1881; C. flosculoides Matile-Ferrero, 1993; C. formicarius Hempel, 1900; C. formosus Hempel, 1900; C. grandis Hempel, 1900; C. gregarius Hempel, 1932; C. iheringi Cockerell, 1895; C. janeirensis; C. lucidus; C. purpureus Hempel, 1900; C. quadratus Green, 1935; C. speciosus Hempel, 1900; C. stellifer e C. variegatus Hempel, 1900. São designados lectótipos e paralectótipos para C. agrestis, C. deodorensis, C. diospyros, C. formosus, C. purpureus, C. speciosus e C. variegatus e um neótipo para C. cassiae.

Relatório Preliminar sobre a Biodiversidade - Complexo de Árias protegidas do Leste da Ilha da Boa Vista

O Complexo de Áreas Protegidas do Leste da Ilha da Boa Vista (CAPLBV) inclui áreas terrestres, costeiras e marinhas bem como algumas colinas de baixa altitude em suas zonas terrestres (como a Ponta de Chã de Tarafe e o Monumento Natural de Monte Estância) na parte oriental da ilha da Boa Vista e estende-se por uma vasta área desde a Ponta de Ajudante a sul até a Ponta de Chã de Tarafe a norte. A biodiversidade da ilha da Boa Vista é caracterizada pela existência de várias comunidades de fauna e flora representativas dos ecossistemas costeiros e marinhos de Cabo Verde, da qual se destaca a tartaruga marinha Caretta caretta que aqui tem a sua principal área de desova em Cabo Verde. A vegetação costeira inclui Sporobolus spicatus, Cakile maritima, Sesuvium sesuvioides, Zygophylum fontanesii e Zygophylum simplex, sendo que as espécies mais representativas nas áreas lagunares são Arthrocnemum glaucum, Zygophylum waterlotii, Zygophylum fontanesii, Sporobolus minutus, Sporobolus spicatus e Cyperus bulbosus. A avifauna associada inclui Charadrius alexandrinus, Himantopus himantopus, Arenaria interpres, Pluvialis squatarola, Tringa nebularia, Ardea cinerea, Egretta garcetta, Ibis bulbucus, Platalea leucorodia, Pandion haliaetus, Fregata magnificens, Calonectris edwardsii, Sula leucogaster, Phaethon aethereus, Pelagodroma marina e Oceanodroma castro. As comunidades de corais ao longo da costa da ilha da Boa Vista, nomeadamente no ilhéu de Sal Rei e na baía das Gatas são das mais diversificadas e abundantes de todo o território de Cabo Verde (Cabo Verde 2000, 2001). As espécies do género Conus apresentam uma elevada diversidade e um elevado grau de endemismo. Várias espécies de tubarões e peixes pelágicos bem como mamíferos marinhos se reproduzem nas águas costeiras da Boa Vista. O presente relatório tem como objectivo caracterizar o ambiente terrestre, costeiro e marinho em geral, identificar e avaliar a situação da biodiversidade na área proposta para fazer parte do CAPLBV e nas áreas circundantes, através do levantamento, com recurso à pesquisa bibliográfica e saídas de campo, da diversidade e abundância da flora e fauna, em especial das espécies em vias de extinção e as endémicas, das espécies com importância ecológica no contexto internacional decorrente da posição biogeográfica do arquipélago e das espécies com importância ecológica e económica para a ilha da Boa Vista bem como para o arquipélago de Cabo Verde.