Preparation of bacterial DNA template by boiling and effect of immunoglobulin G as an inhibitor in real-time PCR for serum samples from patients with brucellosis.

Real-time PCR is a widely used tool for the diagnosis of many infectious diseases. However, little information exists about the influences of the different factors involved in PCR on the amplification efficiency. The aim of this study was to analyze the effect of boiling as the DNA preparation method on the efficiency of the amplification process of real-time PCR for the diagnosis of human brucellosis with serum samples. Serum samples from 10 brucellosis patients were analyzed by a SYBR green I LightCycler-based real-time PCR and by using boiling to obtain the DNA. DNA prepared by boiling lysis of the bacteria isolated from serum did not prevent the presence of inhibitors, such as immunoglobulin G (IgG), which were extracted with the template DNA. To identify and confirm the presence of IgG, serum was precipitated to separate and concentrate the IgG and was analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blotting. The use of serum volumes above 0.6 ml completely inhibited the amplification process. The inhibitory effect of IgG in serum samples was not concentration dependent, and it could be eliminated by diluting the samples 1/10 and 1/20 in water. Despite the lack of the complete elimination of the IgG from the template DNA, boiling does not require any special equipment and it provides a rapid, reproducible, and cost-effective method for the preparation of DNA from serum samples for the diagnosis of brucellosis.

Proxies de temperatura i pluviositat per a la reconstrucció climàtica a la Península Ibèrica

Amb la finalitat d’avaluar els lípids alquilats com a proxies de precipitació i temperatura a la Península Ibèrica, s’han analitzat 23 mostres de sòls de diferents punts del territori espanyol. L’estudi d’aquests biomarcadors cuticulars s’ha fet a través de la identificació i quantificació del seu contingut a les mostres, el càlcul de diversos paràmetres com l’índex de preferència de carboni (CPI), la longitud mitjana de cadena (ACL) o la pèrdua de matèria orgànica per ignició (LOI), i la recerca de correlacions estadístiques entre les variables climàtiques dels punts de mostreig i els resultats obtinguts. Aquests conclouen amb el fet de que els lípids alquilats són útils com a biomarcadors cuticulars de plantes superiors i tenen un potencial significatiu com a proxies de precipitació a la Península Ibèrica.

Claudin-19 mutations and clinical phenotype in Spanish patients with familial hypomagnesemia with hypercalciuria and nephrocalcinosis.

Familial hypomagnesemia with hypercalciuria and nephrocalcinosis is an autosomal recessive tubular disorder characterized by excessive renal magnesium and calcium excretion and chronic kidney failure. This rare disease is caused by mutations in the CLDN16 and CLDN19 genes. These genes encode the tight junction proteins claudin-16 and claudin-19, respectively, which regulate the paracellular ion reabsorption in the kidney. Patients with mutations in the CLDN19 gene also present severe visual impairment. Our goals in this study were to examine the clinical characteristics of a large cohort of Spanish patients with this disorder and to identify the disease causing mutations. We included a total of 31 patients belonging to 27 unrelated families and studied renal and ocular manifestations. We then analyzed by direct DNA sequencing the coding regions of CLDN16 and CLDN19 genes in these patients. Bioinformatic tools were used to predict the consequences of mutations. Clinical evaluation showed ocular defects in 87% of patients, including mainly myopia, nystagmus and macular colobomata. Twenty two percent of patients underwent renal transplantation and impaired renal function was observed in another 61% of patients. Results of the genetic analysis revealed CLDN19 mutations in all patients confirming the clinical diagnosis. The majority of patients exhibited the previously described p.G20D mutation. Haplotype analysis using three microsatellite markers showed a founder effect for this recurrent mutation in our cohort. We also identified four new pathogenic mutations in CLDN19, p.G122R, p.I41T, p.G75C and p.G75S. A strategy based on microsequencing was designed to facilitate the genetic diagnosis of this disease. Our data indicate that patients with CLDN19 mutations have a high risk of progression to chronic renal disease.

Síntesi de nous catecols amb aplicació en materials adhesius bioinspirats

En el nostre grup de recerca i en col·laboració amb el doctor Daniel Ruiz-Molina del Centre d’Investigació en Nanociència i Nanotecnologia (CIN2) d’aquest campus universitari, hem iniciat un projecte que es planteja aconseguir biomimetitzar certes proteïnes adhesives de mol·luscs, l’adherència de les quals es deu a la presència de la funcionalitat catecol. L’objectiu és poder desenvolupar nous materials adhesius basats en aquesta funcionalitat, per tant, és necessari posar a punt protocols sintètics per a l’obtenció de compostos tipus catecol convenientment substituïts. Concretament, en el present treball s’ha aconseguit la síntesi del nou catecol 10, que incorpora en la seva estructura una cadena alquílica acabada en la funcionalitat tiol, amb la finalitat de desenvolupar, més endavant, superfícies o nanopartícules d’or adhesives. En el transcurs d’aquest treball s’ha sintetitzat 4-(6’-mercaptohexil)catecol 10 en una síntesi de tipus convergent l’etapa clau de la qual és una reacció de Wittig entre la sal de fosfoni 11 i l’aldehid 20. La síntesi desenvolupada consta de 9 etapes i s’ha obtingut un rendiment global del 2%.

Selection of Reference Genes for Quantitative Real Time PCR (qPCR) Assays in Tissue from Human Ascending Aorta.

Dilatation of the ascending aorta (AAD) is a prevalent aortopathy that occurs frequently associated with bicuspid aortic valve (BAV), the most common human congenital cardiac malformation. The molecular mechanisms leading to AAD associated with BAV are still poorly understood. The search for differentially expressed genes in diseased tissue by quantitative real-time PCR (qPCR) is an invaluable tool to fill this gap. However, studies dedicated to identify reference genes necessary for normalization of mRNA expression in aortic tissue are scarce. In this report, we evaluate the qPCR expression of six candidate reference genes in tissue from the ascending aorta of 52 patients with a variety of clinical and demographic characteristics, normal and dilated aortas, and different morphologies of the aortic valve (normal aorta and normal valve n = 30; dilated aorta and normal valve n = 10; normal aorta and BAV n = 4; dilated aorta and BAV n = 8). The expression stability of the candidate reference genes was determined with three statistical algorithms, GeNorm, NormFinder and Bestkeeper. The expression analyses showed that the most stable genes for the three algorithms employed were CDKN1β, POLR2A and CASC3, independently of the structure of the aorta and the valve morphology. In conclusion, we propose the use of these three genes as reference genes for mRNA expression analysis in human ascending aorta. However, we suggest searching for specific reference genes when conducting qPCR experiments with new cohort of samples.

Síntesis de nuevos catecoles como precursores de materiales adhesivos bioinspirados

En nuestro grupo de investigación y en colaboración con el Doctor Daniel Ruiz-Molina del Centro de Investigación en Nanociencia y Nanotecnología (CIN2) de este campus universitario, hemos iniciado un proyecto que se plantea lograr biomimetizar ciertas proteínas adhesivas de moluscos, cuya adherencia se debe a la presencia de la funcionalidad catecol. El objetivo es poder desarrollar nuevos materiales adhesivos basados en esa funcionalidad, siendo necesaria por lo tanto el desarrollar protocolos sintéticos para la obtención de compuestos tipo catecol convenientemente sustituidos. Concretamente, en el presente trabajo de Master en Experimentación Química se ha conseguido la síntesis de los nuevos catecoles 1 y 2, que incorporan en su estructura una cadena alquílica acabada con la funcionalidad tiol, con el fin de poder desarrollar más adelante superficies o nanopartículas de oro adhesivas. Para la síntesis del 4-(3’-mercaptopropil)catecol 1 se ha puesto a punto una ruta de obtención partiendo del producto comercial eugenol, consistente en 3 etapas sintéticas y con un rendimiento global cercano al 70%. También se ha desarrollado una ruta sintética para el 4-(7’-mercaptopropil)catecol 2 que parte del 3,4-dimetoxibenzaldehído, y consta de 6 etapas, presentando un rendimiento global del 25%.

La Institucionalización de las Conferencias Intergubernamentales en la Unión Europea

Des de mitjans dels anys vuitanta, la UE ha dut a terme sis CIGS amb l'objectiu de revisar els Tractats comunitaris. Com podem explicar els resultats producte d'aquesta cadena de negociacions? En aquest paper mantenim que la manera com es porten les negociacions influeix els resultats de les CIG. En particular, hi ha una sèrie de procediments i pràctiques que faciliten l'abast d'acords. Partint de la literatura del neoinstitucionalismo, derivem tres funcions dels procediments i pràctiques existents a les CIG: estructurar les negociacions, distribuir la informació i definir el rol de mediador en els processos de negociació. Aquest argument es mostra a través d'alguns exemples de les CIG celebrades a partir dels anys noranta.

Energía del siglo XXI: Perspectivas europeas y tendencias globales

Fins ara, el desenvolupament del mercat interior ha patit les limitacions derivades de la manca d'una política energètica comú i, en el pla internacional, la UE, fortament dependent dels aprovisionaments externs, no ha estat capaç de parlar amb una sola veu a l'hora de negociar acords de subministrament amb els seus principals proveïdors de petroli i gas, i amb els països de trànsit. Sens dubte, la visió intergubernamentalista de la integració europea és la més indicada per explicar les mancances assenyalades en la mesura que la política energètica, especialment, en les vessants de la seguretat dels aprovisionaments i la independència energètica, forma part del nucli dur de la sobirania estatal. Només cal comprovar que, fins ara, tot i els continus avenços del mercat interior, els tractats han mantingut el vot per unanimitat del Consell pel que fa a les decisions relacionades amb l'energia, excloent, és clar, al Parlament Europeu (PE).. El Tractat de Lisboa introdueix un canvi de tendència en vincular la política energètica, alhora, al medi ambient i al "esperit de solidaritat entre els Estats membres "amb l'objectiu de garantir el funcionament del mercat de l'energia i la seguretat de l'abastament energètic en la Unió, i fomentar l'eficiència energètica i l'estalvi energètic i el desenvolupament d'energies noves i renovables i la interconnexió de les xarxes energètiques. Per primera vegada, el Parlament Europeu i el Consell establiran conjuntament (codecisió), les mesures necessàries per assolir els esmentats objectius. aquesta formulació reflecteix els canvis que està experimentant la política energètica a la Unió i que constitueixen l'objecte central d'aquest llibre: la seguretat de energètica i seva connexió amb el canvi climàtic.

Spatial analysis of the relationship between mortality from cardiovascular and cerebrovascular disease and drinking water hardness.

Previously published scientific papers have reported a negative correlation between drinking water hardness and cardiovascular mortality. Some ecologic and case-control studies suggest the protective effect of calcium and magnesium concentration in drinking water. In this article we present an analysis of this protective relationship in 538 municipalities of Comunidad Valenciana (Spain) from 1991-1998. We used the Spanish version of the Rapid Inquiry Facility (RIF) developed under the European Environment and Health Information System (EUROHEIS) research project. The strategy of analysis used in our study conforms to the exploratory nature of the RIF that is used as a tool to obtain quick and flexible insight into epidemiologic surveillance problems. This article describes the use of the RIF to explore possible associations between disease indicators and environmental factors. We used exposure analysis to assess the effect of both protective factors--calcium and magnesium--on mortality from cerebrovascular (ICD-9 430-438) and ischemic heart (ICD-9 410-414) diseases. This study provides statistical evidence of the relationship between mortality from cardiovascular diseases and hardness of drinking water. This relationship is stronger in cerebrovascular disease than in ischemic heart disease, is more pronounced for women than for men, and is more apparent with magnesium than with calcium concentration levels. Nevertheless, the protective nature of these two factors is not clearly established. Our results suggest the possibility of protectiveness but cannot be claimed as conclusive. The weak effects of these covariates make it difficult to separate them from the influence of socioeconomic and environmental factors. We have also performed disease mapping of standardized mortality ratios to detect clusters of municipalities with high risk. Further standardization by levels of calcium and magnesium in drinking water shows changes in the maps when we remove the effect of these covariates.

The role of polymerase chain reaction of high-risk human papilloma virus in the screening of high-grade squamous intraepithelial lesions in the anal mucosa of human immunodeficiency virus-positive males having sex with males.

OBJECTIVES To evaluate the advantages of cytology and PCR of high-risk human papilloma virus (PCR HR-HPV) infection in biopsy-derived diagnosis of high-grade squamous intraepithelial lesions (HSIL = AIN2/AIN3) in HIV-positive men having sex with men (MSM). METHODS This is a single-centered study conducted between May 2010 and May 2014 in patients (n = 201, mean age 37 years) recruited from our outpatient clinic. Samples of anal canal mucosa were taken into liquid medium for PCR HPV analysis and for cytology. Anoscopy was performed for histology evaluation. RESULTS Anoscopy showed 33.8% were normal, 47.8% low-grade squamous intraepithelial lesions (LSIL), and 18.4% HSIL; 80.2% had HR-HPV. PCR of HR-HPV had greater sensitivity than did cytology (88.8% vs. 75.7%) in HSIL screening, with similar positive (PPV) and negative predictive value (NPV) of 20.3 vs. 22.9 and 89.7 vs. 88.1, respectively. Combining both tests increased the sensitivity and NPV of HSIL diagnosis to 100%. Correlation of cytology vs. histology was, generally, very low and PCR of HR-HPV vs. histology was non-existent (<0.2) or low (<0.4). Area under the receiver operating characteristics (AUROC) curve analysis of cytology and PCR HR-HPV for the diagnosis of HSIL was poor (<0.6). Multivariate regression analysis showed protective factors against HSIL were: viral suppression (OR: 0.312; 95%CI: 0.099-0.984), and/or syphilis infection (OR: 0.193; 95%CI: 0.045-0.827). HSIL risk was associated with HPV-68 genotype (OR: 20.1; 95%CI: 2.04-197.82). CONCLUSIONS When cytology and PCR HR-HPV findings are normal, the diagnosis of pre-malignant HSIL can be reliably ruled-out in HIV-positive patients. HPV suppression with treatment protects against the appearance of HSIL.

Influence of the LILRA3 Deletion on Multiple Sclerosis Risk: Original Data and Meta-Analysis.

BACKGROUND Multiple sclerosis (MS) is a neurodegenerative, autoimmune disease of the central nervous system. Genome-wide association studies (GWAS) have identified over hundred polymorphisms with modest individual effects in MS susceptibility and they have confirmed the main individual effect of the Major Histocompatibility Complex. Additional risk loci with immunologically relevant genes were found significantly overrepresented. Nonetheless, it is accepted that most of the genetic architecture underlying susceptibility to the disease remains to be defined. Candidate association studies of the leukocyte immunoglobulin-like receptor LILRA3 gene in MS have been repeatedly reported with inconsistent results. OBJECTIVES In an attempt to shed some light on these controversial findings, a combined analysis was performed including the previously published datasets and three newly genotyped cohorts. Both wild-type and deleted LILRA3 alleles were discriminated in a single-tube PCR amplification and the resulting products were visualized by their different electrophoretic mobilities. RESULTS AND CONCLUSION Overall, this meta-analysis involved 3200 MS patients and 3069 matched healthy controls and it did not evidence significant association of the LILRA3 deletion [carriers of LILRA3 deletion: p = 0.25, OR (95% CI) = 1.07 (0.95-1.19)], even after stratification by gender and the HLA-DRB1*15:01 risk allele.

Desenvolupament d'un agent intel·ligent dins el marc de la competició TAC SCM

Aquest projecte està emmarcat dins el grup eXiT d’Intel•lig`encia Artificial del Departament d’Electrònica i Automàtica (EIA) de la Universitat de Girona. Pertany a l’àmbit de la Intel•ligència Artificial i, concretament, en l’apartat d’agents intel•ligents. En el nostre cas, tractarem el desenvolupament d’un agent intel•ligent en un entorn determinat, el de la gestió d’una cadena de producció. Amb l’objectiu de proporcionar un marc experimental on provar diferents tecnologies de suport a la gestió de la cadena de producció, la comunitat d’investigadors va proposar una competició internacional: la Trading Agent Competiton (TAC). En aquesta competició existeixen diferents modalitats. En particular, la Swedish Institution of Computer Science (SICS), juntament amb la Carnegie Mellon University de Pittsburg, Minnesotta, van proposar al 2003 un escenari de muntatge de PC’s basat en el proveïment de recursos, l’embalatge de PC’s i les ventes a clients. Aquesta modalitat és coneguda com aTAC-SCM (Supply Chain Management)

Estudi i implementació d'un cas pràctic (e-commerce) segons etapes del disseny centrat en l'usuari

La idea bàsica d'aquest disseny centrat en l'usuari és obtenir informació sobre els usuaris, les seves tasques i objectius, i fer servir tota aquesta informació per orientar el disseny i el desenvolupament de productes. Per a la realització d'aquest treball s'han establert quatre fases: (1) Investigació, (2) Disseny d'escenaris i flux d'interacció, (3) Prototipat, i (4) Avaluació. El cas pràctic que es tractarà és una cadena de supermercats ecològics que vol promocionar la compra responsable d'aliments.

Rapid diagnosis of human brucellosis by peripheral-blood PCR assay.

A single-step PCR assay with genus-specific primers for the amplification of a 223-bp region of the sequence encoding a 31-kDa immunogenetic Brucella abortus protein (BCSP31) was used for the rapid diagnosis of human brucellosis. We examined peripheral blood from 47 patients, with a total of 50 cases of brucellosis, and a group of 60 control subjects, composed of patients with febrile syndromes of several etiologies other than brucellosis, asymptomatic subjects seropositive for Brucella antibodies, and healthy subjects. Diagnosis of brucellosis was established in 35 cases (70%) by isolation of Brucella in blood culture and in the other 15 cases (30%) by clinical and serological means. The sensitivity of our PCR assay was 100%, since it correctly identified all 50 cases of brucellosis, regardless of the duration of the disease, the positivity of the blood culture, or the presence of focal forms. The specificity of the test was 98.3%, and the only false-positive result was for a patient who had had brucellosis 2 months before and possibly had a self-limited relapse. In those patients who relapsed, the results of our PCR assay were positive for both the initial infection and the relapse, becoming negative once the relapse treatment was completed and remaining negative in the follow-up tests at 2, 4, and 6 months. In conclusion, these results suggest that the PCR assay is rapid and easy to perform and highly sensitive and specific, and it may therefore be considered a useful tool for diagnosis of human brucellosis.

Diagnostic yield of a PCR assay in focal complications of brucellosis.

In order to evaluate the diagnostic yield of a PCR assay for patients with focal complications of brucellosis, we studied by PCR and by conventional microbiological techniques 34 nonblood samples from 32 patients with different focal forms of brucellosis. The samples from patients with brucellosis were paired to an equal number of control samples from the same locations of patients whose illnesses had different etiologies. Thirty-three of the 34 nonblood samples (97%) from the brucellosis patients were positive by PCR, whereas Brucella spp. were isolated from only 29.4% of the conventional cultures. For 11.4% of the patients, the confirmatory serological tests were either negative or showed titers below the diagnostic range. Two patients (6.2%) from the control group, both with tuberculous vertebral osteomyelitis, had a positive PCR result. The brucella PCR of blood from these two patients was also positive, and the two strains of Mycobacterium tuberculosis isolated were analyzed by the brucella PCR, with no evidence of amplification. These results show that the PCR assay is far more sensitive than conventional cultures, and this, coupled with its speed and reduction in risk to laboratory workers, makes this technique a very useful tool for the diagnosis of focal complications of brucellosis.