Morphological and molecular characterization of Colletotrichum spp. from citrus orchards affected by postbloom fruit drop in Brazil

Brazilian isolates of Colletotrichum spp. from citrus orchards affected by postbloom fruit drop were examined for colony colour, mycelial growth, benomyl-resistance, pathogenicity, and genetic variability by random amplified polymorphic DNA (RAPD) analysis. All isolates were obtained from flowers and persistent calyxes from different citrus hosts from São Paulo, Brazil. DNA polymorphisms detected after amplification with random 10-mer primers were used to classify the isolates into two groups. Group I isolates grew rapidly on potato-dextrose agar (PDA) and were sensitive to benomyl, and group II isolates grew slowly on PDA and were benomyl-resistant. Colletotrichum acutatum was analyzed by RAPD and had high genetic similarity with group II isolates of Colletotrichum from citrus. Probably, the group I is C, gloeosporioides and group II is C. acutatum.

Estimativas de parâmetros genéticos para características de crescimento e produtividade em vacas da raça Canchim, utilizando-se inferência bayesiana

The objective of this study was to estimate genetic parameters for body weights at weaning (PD), 12 months old (P12) and adult age (PAD), culling age (TPR, days in herd), number (ND10) and kilograms (QD10) of calves weaned up to ten years of age, total number (NDT) and total kilograms (QDT) of calves weaned during herd life, and kilograms of calves weaned per year in herd (QTPR) of Canchim (5/8 Charolais + 3/8 Zebu) females from one herd. Data consisted of 3,249, 3.111, 1,138, 1,340, 1,362, 1,362, 1,340, 1,340 and 1,340 records of PD, P12, PAD, TPR, ND10, QD10, NDT, QDT and QTPR. respectively. Variance and covariance components were estimated by bivariate analyses between PD, P12 and PAD and other production traits using Bayesian inference. The models included the additive direct, permanent environmental and residual random effects and the fixed effects year and month of birth or calving, calving age and age of the animal, depending on the trait. QD10, QDT and QTPR of each female were obtained by adjusting the weaning weights of calves for year and month of birth, sex and age of cow. Average of heritability estimates were 0.38 (PD), 0.40 (P12), 0.54 (PAD), 0.22 (TPR), 0.22 (ND10), 0.24 (QD10), 0.23 (NDT), 0.23 (QDT) and 0.32 (QTPR), indicating genetic variability to obtain response by selection. Genetic correlations between TPR (-0.02, 0.26 and -0.12), ND10 (0.04, 0.10 and -0.29), QD10 (0.37, 0.39 and -0.13), NDT (-0.03, 0.14 and -0.25), QDT (0.20, 0.33 and -0.16), QTPR (0.21, 0.28 and -0.19) and body weights (PD, P12 and PAD) suggest that selection of females based on weaning and 12-month body weights will not affect productivity. However, it may be decreased by increasing female adult body weight.

Morphological variation in two genetically distinct groups of the golden-striped salamander, Chioglossa lusitanica (Amphibia : Urodela)

Morphometric and colour pattern variation in the endemic Iberian salamander Chioglosso lusitanica is concordant with the genetic differentiation of two groups of populations separated by the Mondego river ill Portugal. Salamanders from the south have shorter digits than those from the north. Clinal variation with a south to north increase in limb. toe and finger length was found superiniposed on this dichotomy resulting in stepped clines for characters describing appendage size. Genetic variability was paralleled by colour pattern variability in the contact zone and in northern populations. To explain the observed parallels we invoke the neutral processes of vicariant isolation. admixture in a secondary contact zone, genetic drift in addition to selection acting along all environmental gradient. Morphological constraints imposed by a highly specialized ecological niche may explain why the genetic subdivision of C. lusitanica since the early, Pleistocene has remained fairly cryptic.

Mineral requirements for growth of Moxoto goats grazing in the semi-arid region of Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Molecular characterization of Acidithiobacillus ferrooxidans and A-thiooxidans strains isolated from mine wastes in Brazil

Nineteen strains of Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans, including 12 strains isolated from coal, copper, gold and uranium mines in Brazil, strains isolated from similar sources in other countries and the type strains of the two species were characterized together with the type strain of A. caldus by using a combination of molecular systematic methods, namely ribotyping, BOX- and ERIC-PCR and DNA-DNA hybridization assays. Data derived from the molecular fingerprinting analyses showed that the tested strains encompassed a high degree of genetic variability. Two of the Brazilian A. ferrooxidans organisms (strains SSP and PCE) isolated from acid coal mine waste and uranium mine effluent, respectively, and A. thiooxidans strain DAMS, isolated from uranium mine effluent, were the most genetically divergent organisms. The DNA-DNA hybridization data did not support the allocation of Acidithiobacillus strain SSP to the A. ferrooxidans genomic species, as it shared only just over 40% DNA relatedness with the type strain of the species. Acidithiobacillus strain SSP was not clearly related to A. ferrooxidans in the 16S rDNA tree.

Diversidade genética de quatro linhagens de Oreochromis niloticus utilizando o marcador RAPD

The aim of this study was to analyze the genetic diversity of four Nile Tilapia (Oreochromis niloticus) strains using the RAPD marker. Fin samples of GIFT (G), Chitralada (C), Supreme (S) and Bouake (B) juvenile stocks have been collected. The 11 primers used yielded 81 fragments of which 41.98% were polymorphic. The percentage of polymorphic loci (G: 18.52%; C: 19.75%; S: 20.99% and B: 24.79%) showed that there was a genetic differentiation among the strains, showing the G(st) values a high (BxG: 0.231; BxC: 0.224; GxC: 0.194 and SxC: 0.208) and elevated (BxS: 0.315 and GxS: 0.270) differentiation. The highest gene flow (N(m)) was among the GxC (2.082) strains. The distance and genetic identity values (0.044 and 0.957 respectively) and the dendrogram indicate that the GxC is the most genetically similar strains. The genetic similarity was high among of the strains (G: 0,932; C: 0,903; S: 0,891 and B: 0.900). These results will enable a correct reproductive and genetic strains management.

Mother-offspring interactions in Zebu cattle

The knowledge of the interaction between mother and offspring might contribute to enhance the welfare of the offspring and to improve the reproductive efficiency of the cow. However, there is still little information available about such interaction in some cattle breeds. A series of observational studies were set up, addressing the mother-offspring relationships of Nelore, Guzerat and Gyr cattle breeds. Firstly, the behaviour of cows and calves around the time of parturition was described, and then, the underlying factors that affect the calves' survival and development were studied. Special attention was given to the failure or delay in the first suckling. The results together are indicative of genetic variability for some studied variables, indicating the possibility of selection for calf vigour (using latency to stand up and latency to suckle as its indicators) and maternal ability (using percentage of time in contact with the calves), in spite of the estimates of heritability were low and presented high standard deviation for all variables. The individual variability in their suckling behaviour and the efficiency in first suckling cannot be explained by a single isolated underlying factor. By now, there are some results available, although there are many questions without answers. The field is still open for the development of future research.

Esterase patterns in species of the triatome bug Rhodnius

The aim of the present study was to analyse esterase patterns in three triatomine species of Rhodnius genus. Four loci, Est 1, Est 2, Est 3 and Est 4, were found. The corresponding enzymes were characterized as carboxylesterases (E.C. 3.1.1.1) or cholinesterases (E.C. 3.1.1.8) based on inhibitory experiments, using eserine sulphate, malathion, mercury chloride, p-chloromercuribenzoate (pCMB) and iodoacetamide. Low genetic variability was observed: Est 1, Est 2 and Est 3 were monomorphic in Rhodnius domesticus, Rhodnius robustus and Rhodnius neivai, whereas locus Est 4 was polymorphic in the first two species. The UPGMA analysis based on esterase genotypic frequencies indicated greater similarity between R. domesticus and R. robustus when compared with R. neivai. The present study expands our knowledge about genetic variability among triatomines and accords with the hypothesis that R. domesticus is a species derived from R. robustus.

Modelos lineares generalizados mistos na avaliação genética da prenhez precoce na raça Nelore

This study aimed to use the generalized linear models with probit and logit link function to evaluate early pregnancy, and to observe the effects on genetic variability and on sire selection when different ages are adopted in the definition of this trait. Early pregnancy was studied at 15 (EP15), and 21 (EP21) months. The analysis was done in R software. Pearson correlations (PC), between genetic predicted values and percentage of bulls in common considering only 10% of bulls with higher genetic values (TOP 10), between classification by logit and probit models and in each model among EP15 and EP21, were calculated. The heritability for EP15 and EP21 were close between models, except for EP15 using probit link function. PC and TOP10 among models were high. The Akaike and Bayesian criteria reported was similar between models. TOP10, considering the same model, among EP15-EP21 were moderated between EP15-EP21.

Selection of alfalfa cultivars adapted for tropical environments with repeated measures using PROC MIXED of SAS (R) System

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Cytogenetic and molecular characterization of Speothos venaticus specimens.

The bush dog (Speothos venaticus) is a South American canid, included in the IBAMA (Brazilian Institute of Environment and Renewable Natural Resources) official list of animals threatened with extinction, in the vulnerable category. As a preservation and conservation strategy, specimens kept in captivity by Brazilian Institutions are monitored by a management plan. In order to characterize and analyze the genetic variability of bush dog specimens, a cytogenetic analysts was carried out, and microsatellite data were also obtained through the use of 15 primers, originally developed for the domestic dog (Canis familiaris). All tested primers showed transferability and amplified fragment sizes similar to those described for the canine genome. From the total number of primers, eight were tested, and presented two polymorphic regions. Regarding cytogenetic analysis, one of the animals had chromosomal mosaicism,-disqualifying it as a reproducer to form stocks. Thus, we concluded that the genetic evaluation of wild animals kept in captivity provides data that can help with the practice of exchange between different institutions, avoiding problems in the reproductive capacity of the breeding stock.

Paracoccidioides brasiliensis antigen batches from the same isolate show immunological and biochemical differences

We investigated the occurrence of antigenic and biochemical variability among Paracoccidioides brasiliensis antigen batches prepared according to the same protocol. Initially (experiment 1), we analyzed two antigen lots of two human isolates (Bt1 and Bt2), cultured in two media (PYG: bactopeptone, yeast extract, glucose; MMM: McVeigh and Morton medium) in SDS-PAGE and in two immunological tests (immunodiffusion-ID and footpad swelling test-FPT). Afterwards (experiment 2), we compared the antigenic profile of three antigen hatches from three human isolates (Bt1, Bt2 and Bt3) by two-dimensional immunoelectrophoresis (2 D-IEP) against a reference system for P. brasiliensis antigens. In experiment 1, there were important intra- and inter-strain antigenic differences between batches of the fungal isolates cultured on both media. The block titration of the antigen batches for the immunological tests revealed correlation between protein concentration and biological activity in ID and no correlation in FPT. In experiment 2, the reference system for P brasiliensis showed 26 antigen peaks. There were important differences between batches prepared from the same isolate and between batches from different isolates. Our data suggested the occurrence of instability in the synthesis of antigenic components by a same P. brasiliensis isolate, under controlled incubation conditions.

Variation in mandible shape in Thrichomys apereoides (Mammalia: Rodentia): Geometric analysis of a complex morphological structure

The model of development and evolution of complex morphological structures conceived by Atchley and Hall in 1991 (Biol. Rev. 66:101-157), which establishes that changes at the macroscopic, morphogenetic level can be statistically detected as variation in skeletal units at distinct scales, was applied in combination with the formalism of geometric morphometrics to study variation in mandible shape among populations of the rodent species Thrichomys apereoides. The thin-plate spline technique produced geometric descriptors of shape derived from anatomical landmarks in the mandible, which we used with graphical and inferential approaches to partition the contribution of global and localized components to the observed differentiation in mandible shape. A major pattern of morphological differentiation in T. apereoides is attributable to localized components of shape at smaller geometric scales associated with specific morphogenetic units of the mandible. On the other hand, a clinal trend of variation is associated primarily with localized components of shape at larger geometric scales. Morphogenetic mechanisms assumed to be operating to produce the observed differentiation in the specific units of the mandible include mesenchymal condensation differentiation, muscle hypertrophy, and tooth growth. Perspectives for the application of models of morphological evolution and geometric morphometrics to morphologically based systematic biology are considered.

Determinação de parâmetros genéticos em população de gonçalo-alves (Astronium fraxinifolium) através das características fisiológicas da semente

Seeds of Astronium fraxinifolium (Anarcadiaceae) were collected in two years, and submitted to tests of seed germination and vigour (first count, aging and electric conductivity), in order to verify the potencial of conservation and if variations in the seed quality presented on association with genetic parameters. Coefficient of heritability in average (ĥm 2) were 0.91 and 0.97 to germination; 0.90 and 0.96 to first count; 0.93 and 0.97 to aging and 0.95 and 0.99 to electric conductivity, for seeds collected in 1997 and 1998, respectively, evidencing a great heritability to all studied characteristics. Genetic variability was influenced more by environmental conditions of blooming and harvest of seeds than storage time.