Evaluation and application of microsatellites for population identification of Fraser River chinook salmon (Oncorhynchus tshawytscha)

Variation at 13 microsatellite loci was previously surveyed in approximately 7400 chinook salmon (Oncorhynchus tshawytscha) sampled from 50 localities in the Fraser River drainage in southern British Columbia. Evaluation of the utility of the microsatellite variation for population-specific stock identification applications indicated that the accuracy of the stock composition estimates generally improved with an increasing number of loci used in the estimation procedure, but an increase in accuracy was generally marginal after eight loci were used. With 10–14 populations in a simulated fishery sample, the mean error in population-specific estimated stock composition with a 50-popula-tion baseline was <1.4%. Identification of individuals to specific populations was highest for lower Fraser River and lower and North Thompson River populations; an average of 70% of the individual fish were correctly assigned to specific populations. The average error of the estimated percentage for the seven populations present in a coded-wire tag sample was 2% per population. Estimation of stock composition in the lower river commercial net fishery prior to June is of key local fishery management interest. Chinook salmon from the Chilcotin River and Nicola River drainages were important contributors to the early commercial fishery in the lower river because they comprised approximately 50% of the samples from the net fishery prior to mid April.

Modeling the effect of striped bass (Morone saxatilis) on the population viability of Sacramento River winter-run chinook salmon (Onchorhynchus tshawytscha)

We estimated the impact of striped bass (Morone saxatilis) predation on winter-run chinook salmon (Oncorhynchus tshawytscha) with a Bayesian population dynamics model using striped bass and winter-run chinook salmon population abundance data. Winter-run chinook salmon extinction and recovery probabilities under different future striped bass abundance levels were estimated by simulating from the posterior distribution of model parameters. The model predicts that if the striped bass population declines to 512,000 adults as expected in the absence of stocking, winter-run chinook salmon will have about a 28% chance of quasi-extinction (defined as three consecutive spawning runs of fewer than 200 adults) within 50 years. If stocking stabilizes the striped bass population at 700,000 adults, the predicted quasi-extinction probability is 30%. A more ambitious stocking program that maintains a population of 3 million adult striped bass would increase the predicted quasi-extinction probability to 55%. Extinction probability, but not recovery probability, was fairly insensitive to assumptions about density dependence. We conclude that winter-run chinook salmon face a serious extinction risk without augmentation of the striped bass population and that substantial increases in striped bass abundance could significantly increase the threat to winter-run chi-nook salmon if not mitigated by increasing winter chinook salmon survival in some other way.

Larval development of the southern sea garfish (Hyporhamphus melanochir) and the river garfish (H. regularis) (Beloniformes: Hemiramphidae) from South Australian waters

Larval development of the southern sea garfish (Hyporhamphus melanochir) and the river garfish (H. regularis) is described from specimens from South Australian waters. Larvae of H. melanochir and H. regularis have completed notochord flexion at hatching and are characterized by an elongate body with distinct rows of melanophores along the dorsal, lateral, and ventral surfaces; a small to moderate head; a heavily pigmented and long straight gut; a persistent pre-anal finfold; and an extended lower jaw. Fin formation occurs in the following sequence: caudal, dorsal and anal (almost simultaneously), pectoral, and pelvic. Despite the similarities between both species and among hemiramphid larvae in general, H. melanochir larvae are distinguishable from H. regularis by 1) having 58–61 vertebrae (vs. 51–54 for H. regularis); 2) having 12–15 melanophore pairs in longitudinal rows along the dorsal margin between the head and origin of the dorsal fin (vs. 19–22 for H. regularis); and 3) the absence of a large ventral pigment blotch anteriorly on the gut and isthmus (present in H. regularis). Both species can be distinguished from similar larvae of southern Australia (other hemiramphids and a scomberosocid) by differences in meristic counts and pigmentation.

Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish

Little is known about the ocean distributions of wild juvenile coho salmon off the Oregon-Washington coast. In this study we report tag recoveries and genetic mixed-stock estimates of juvenile fish caught in coastal waters near the Columbia River plume. To support the genetic estimates, we report an allozyme-frequency baseline for 89 wild and hatchery-reared coho salmon spawning populations, extending from northern California to southern British Columbia. The products of 59 allozyme-encoding loci were examined with starch-gel electrophoresis. Of these, 56 loci were polymorphic, and 29 loci had P0.95 levels of polymorphism. Average heterozygosities within populations ranged from 0.021 to 0.046 and averaged 0.033. Multidimensional scaling of chord genetic distances between samples resolved nine regional groups that were sufficiently distinct for genetic mixed-stock analysis. About 2.9% of the total gene diversity was due to differences among populations within these regions, and 2.6% was due to differences among the nine regions. This allele-frequency data base was used to estimate the stock proportions of 730 juvenile coho salmon in offshore samples collected from central Oregon to northern Washington in June and September-October 1998−2000. Genetic mixed-stock analysis, together with recoveries of tagged or fin-clipped fish, indicates that about one half of the juveniles came from Columbia River hatcheries. Only 22% of the ocean-caught juveniles were wild fish, originating largely from coastal Oregon and Washington rivers (about 20%). Unlike previous studies of tagged juveniles, both tag recoveries and genetic estimates indicate the presence of fish from British Columbia and Puget Sound in southern waters. The most salient feature of genetic mixed stock estimates was the paucity of wild juveniles from natural populations in the Columbia River Basin. This result reflects the large decrease in the abundances of these populations in the last few decades.

The phytoplankton species composition and abundance of Ogun River, Abeokuta, southwestern Nigeria

The phytoplankton species composition and abundance in Ogun River, Ogun state, Southwest Nigeria was studied for a period of seven months (December, 2011 - June, 2012), a total of forty-one genera belonging to five taxonomic groups were recorded from Ogun River. The phytoplankton species composition was surpassed by Chrysophyta with 15 species consisting of 36.6% followed by Chlorophyta with 14 consisting of 34.1%. This was followed by Cyanophyta (7 species) consisting of 17.1%, Euglenophyta with 3 species consisting of 7.3% and Pyrrophyta with 2 species consisting 4.92%. Cyanophyta was the highest in abundance consisting of 41% while the lowest in abundance was Pyrrophyta consisting of 1.5%. The low nature of phytoplankton abundance and diversity observed in this study must have been caused by the polluted nature of the water due to the anthropogenic activities carried out around its shores The dominance of Cyanophyta in this river is similar to findings from Lake Victoria, Lake Bishoftu, Lake Chaohu and the temple pond of Thirupour.

The zooplankton species composition and abundance in Ogun River, Abeokuta, Ogun State, southwestern Nigeria

Investigation on the species composition and abundance of zooplankton in Ogun River, Abeokuta, Ogun state, Southwestern Nigeria was carried out for a period of seven months (December, 2011-June, 2012), Using hand trawling method, 55 µm mesh size plankton net was trawled horizontally ten times to capture zooplankton. The zooplankton samples were put into properly labeled plastic containers and preserved in 4% formalin solution. A total of sixteen genera from five taxonomic groups were recorded from Ogun River. Cladocera predominated both in terms of species composition and abundance. Five species of Cladocera was recorded consisting of 31.25%. Protozoa and Rotifera recorded four species each consisting of 25%. Copepoda recorded two species consisting of 12.5%, and Ostracoda with one species consisting of 6.25%. The low nature of zooplankton abundance and species composition observed in this study must have been caused by the polluted nature of the water due to the anthropogenic activities carried out around its shores The dominance of Cladocera in this river is similar to findings from River Echara and River Imo, Southeastern Nigeria.

Assessment of some physico-chemical parameters of River Ogun (Abeokuta, Ogun State, southwestern Nigeria) in comparison with national and international standards

This study assessed the physico-chemical quality of River Ogun, Abeokuta, Ogun state, Southwestern Nigeria. Four locations were chosen spatially along the water course to reflect a consideration of all possible human activities that are capable of changing the quality of river water. The water samples were collected monthly for seven consecutive months (December 2011 – June 2012) at the four sampling stations. pH, air temperature (℃), water temperature (℃), conductivity (µs/cm) and total dissolved solids (mg/L) were conducted in-situ with the use of HANNA Combo pH and EC multi meter Hi 98129 and Mercury-in-glass thermometer while dissolved oxygen (mg/L), nitrate (mg/L), phosphate (mg/L), alkalinity (mg/L) and hardness (mg/L) were determined ex-situ using standard methods. Results showed that dissolved oxygen, hydrogen ion concentration, total hardness and nitrate were above the maximum permissible limit of National Administration for Food, Drugs and Control (NAFDAC), Standard Organization of Nigeria (SON), Federal Environmental Protection Agency (FEPA), United States Environmental Protection Agency (USEPA), European Union (EU) and World Health Organization (WHO) for drinking water during certain months of the study period. Results also showed that water temperature and conductivity were within the permissible limits of all the standards excluding FEPA. However, total dissolved solids and alkalinity were within the permissible limits of all the standards. Adejuwon and Adelakun, (2012) also reported similar findings on Rivers Lala, Yobo and Agodo in Ewekoro local government area of Ogun state, Nigeria. Since most of the parameters measured were above the maximum permissible limits of the national and international standards, it can be concluded that the water is unfit for domestic uses, drinking and aquacultural purposes and therefore needs to be treated if it is to be used at all. The low dissolved oxygen values for the first four months was too low i.e. < 5 mg/L. This is most likely as a result of the amount of effluents discharged into the river. To prevent mass extinction of aquatic organisms due to anoxic conditions, proper regulations should be implemented to reduce the organic load the river receives.

Monthly spatial occurrence of phytoplankton and zooplankton in River Ogun, Abeokuta, Ogun State, southwest Nigeria

The aim of this study was to investigate the monthly spatial occurrence of phytoplankton and zooplankton in River Ogun, Abeokuta, Southwest Nigeria. This was carried out for seven months between December, 2011 and June, 2012 in 4 stations. A total of 41 species of phytoplankton and 16 zooplankton species from 5 classes respectively were recorded. Zooplankton was dominated by Cladocera throughout the study period while phytoplankton was dominated by blue green algae (Cyanophyta or Cyanobacteria). The dominance of Cyanophyta in this river is similar to findings by Sekadende and co-workers, Ogato, Deng and co-worker, and Shakila and co-worker. The dominance of Cladocera in this river is similar to findings by Ude and co-workers, and Ogbuagu and co-worker.

Water quality studies of the Delaware River with reference to shad migration

For some time pollution of the waters of the Delaware River by municipal and industrial wastes has been suspected of playing a major role in the decline of the shad fishery. Accordingly, studies were planned to ascertain whether any conditions of water quality caused by stream pollution and harmful or lethal to shad were existant in the waters of the Delaware River during the migration periods of the shad.

Satellite passive microwave observations of the upper Colorado River snowpack

Seasonal snow cover in the mountains of the Upper Colorado River Basin is a major source of water for a large portion of the southwestern United States. The extent and amount of this snowpack not only reflects changes in weather patterns and climate but also influences the general circulation through modification of the energy exchange between land and atmosphere. ... Satellite observations and remote sensing techniques can enhance the standard snowpack observations to provide the temporal and spatial measurements required for understanding the role of snow in the surface energy balance and improving the management of water resources.

Modeling the effect of snow on seasonal runoff within the Truckee River drainage basin

EXTRACT (SEE PDF FOR FULL ABSTRACT): We estimate monthly runoff for a 2-dimensional solution domain containing those areas tributary to Pyramid Lake, Nevada (the Truckee River drainage basin) at a 1-kilometer grid cell spacing. ... To calculate the effect of snow on the hydrologic system, we perform two experiments. In the first we assume that all precipitation falls as rain; in the second we assume that some precipitation falls as snow, thus available water is a combination of rain and snowmelt. We find that considering the effect of snow results in a more accurate representation of mean monthly flow rates, in particular the peak flow during the melt season in the Sierra Nevada. These preliminary results indicate that a relatively simple snow model can improve the representation of Truckee River basin hydrology, significantly reducing errors in modeled seasonal runoff.

River salinity variations in response to discharge: examples from the western United States during the early 1900s

Major controls on river salinity (total dissolved solids) in the western United States are climate, geology, and human activity. Climate, in general, influences soil-river salinity via salt-balance variations. When climate becomes wetter, river discharge increases and soil-river salinity decreases; when climate becomes drier river discharge decreases and soil-river salinity increases. This study characterizes the river salinity response to discharge using statistical-dynamic methods. An exploratory analysis of river salinity, using early 1900s water quality surveys in the western United States, shows much river salinity variability is in response to storm and annual discharge. Presumably this is because river discharge is largely supported by surface flow.

Disturbance climate in the Columbia River Basin [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): Climatological events that disturb a landscape are important components in ecosystem processes. Modern ecosystem management plans now hope to incorporate knowledge of the spatial distribution and frequency of disturbance climate. The following describes a few analytic tools developed to help managers include disturbance climate in an ecosystem management plan for areas in the Columbia River Basin of the northwestern United States.

Monte Carlo simulation of streamflow of the Salt River, Arizona

EXTRACT (SEE PDF FOR FULL ABSTRACT): Evaluations of the impact of climate change (such as a greenhouse effect) upon water resources should represent both the expected change and the uncertainty in that expectation. Since water resources such as streamflow and reservoir levels depend on a variety of factors, each of which is subject to significant uncertainty, it is desirable to formulate methods of representing that uncertainty in the forcing factors and from this determine the uncertainty in the response variables of interest. We report here progress in the representation of the uncertainty in climate upon the uncertainty in the estimated hydrologic response.