DNA methylation at cytosine position 5

DNA methylation appears to be involved in the regulation of gene expression. Transcriptionally inactive (silenced) genes normally contain a high proportion of 5-methyl-2'-deoxycytosine residues whereas transcriptionally active genes show much reduced levels. There appears good reason to believe that chemical agents capable of methylating 2'-deoxycytosine might affect gene expression and as a result of hypermethylating promoter regions of cytosine-guanine rich oncogenic sequences, cancer related genes may be silenced. This thesis describes the synthesis of a number of `electrophilic' S-methylsulphonium compounds and assesses their ability to act as molecules capable of methylating cytosine at position 5 and also considers their potential as cytotoxic agents. DNA is methylated in vivo by DNA methyltransferase utilising S-adenoxylmethionine as the methyl donor. This thesis addresses the theory that S-adenoxylmethionine may be replaced as the methyl donor for DNA methytransferase by other sulphonium compounds. S-[3H-methyl]methionine sulphonium iodide was synthesised and experiments to assess the ability of this compounds to transfer methyl groups to cytosine in the presence of DNA methyltransferase were unsuccessful. A proline residue adjacent to a cysteine residue has been identified to a highly conserved feature of the active site region of a large number of prokaryotic DNA methyltransferases. The thesis examines the possibility that short peptides containing the Pro-Cys fragment may be able to facilitate the alkylation of cytosine position 5 by sulphonium compounds. Peptides were synthesised up to 9 amino acids in length but none were shown to exhibit significant activity. Molecular modelling techniques, including Chem-X, Quanta, BIPED and protein structure prediction programs were used to assess any structural similarities that may exist between short peptides containing a Pro-Cys fragment and similar sequences present in proteins. A number of similar structural features were observed.

The mammalian phosphatidylinositol 3-phosphate 5-kinase (PIKfyve) regulates endosome-to-TGN retrograde transport

The yeast gene fab1 and its mammalian orthologue Pip5k3 encode the phosphatidylinositol 3-phosphate [PtdIns(3)P] 5-kinases Fab1p and PIKfyve, respectively, enzymes that generates phosphatidylinositol 3,5-bisphosphate [PtdIns(3,5)P(2)]. A shared feature of fab1Delta yeast cells and mammalian cells overexpressing a kinase-dead PIKfyve mutant is the formation of a swollen vacuolar phenotype: a phenotype that is suggestive of a conserved function for these enzymes and their product, PtdIns(3,5)P(2), in the regulation of endomembrane homeostasis. In the current study, fixed and live cell imaging has established that, when overexpressed at low levels in HeLa cells, PIKfyve is predominantly associated with dynamic tubular and vesicular elements of the early endosomal compartment. Moreover, through the use of small interfering RNA, it has been shown that suppression of PIKfyve induces the formation of swollen endosomal structures that maintain their early and late endosomal identity. Although internalisation, recycling and degradative sorting of receptors for epidermal growth factor and transferrin was unperturbed in PIKfyve suppressed cells, a clear defect in endosome to trans-Golgi-network (TGN) retrograde traffic was observed. These data argue that PIKfyve is predominantly associated with the early endosome, from where it regulates retrograde membrane trafficking to the TGN. It follows that the swollen endosomal phenotype observed in PIKfyve-suppressed cells results primarily from a reduction in retrograde membrane fission rather than a defect in multivesicular body biogenesis.

Novel anti-bacterials against MRSA:Synthesis of focussed combinatorial libraries of tri-substituted 2(5H)-furanones

Mucobromic and mucochloric acid were used as building blocks for the construction of a chemical combinatorial library of 3,4,5-trisubstituted 2(5H)-furanones. With these 2 butenolide building blocks, and eight alcohols a sublibrary of 16 dihalogenated 5-alkoxy-2(5H)-furanones was prepared. This sublibrary of 5-alkoxylated furanones was reacted with 16 amines generating a full size focussed combinatorial library of 256 individual compounds. This three dimensional combinatorial library of 3-halogen-4-amino-5-alkoxy-2(5H)-furanones was prepared around the benzimidazolyl furanone lead structure by applying a solution phase combinatorial chemistry concept. Typical representatives of the library were purified and fully characterized and one x-ray structures was recorded, additionally. The 3-bromo-4-benzimizazolyl-5-methoxy-2(5H)furanone, Br-A-l, showed an MIC of 8 μg/ml against the multiresistant Staphylococcus aureus ( MRSA). © 2006 Bentham Science Publishers Ltd.

(Table 1) Age determination of sediment core AAS-62/2

Variations in the Indian summer monsoon (ISM) intensity during the last 16.7?ka have been studied using organic carbon (Corg), d15N of sedimentary organic matter, CaCO3, sediment texture, d18OC, and Mg/Ca-derived sea surface temperature, d18O of sea water and sea surface salinity, in a 14C-dated sediment core from the eastern Arabian Sea. The d18O in water and planktonic foraminifera shells off the central west coast of India may be controlled by the ISM intensity as this area receives high precipitation and land runoff. Also, the Corg and CaCO3 contents of sediments and d15N of sedimentary organic matter may be linked to ISM-induced productivity and denitrification. The results of the present study reveal that between 16 and 15.2 ka BP, the ISM was weak with minor fluctuations and started intensifying around 15.2 ka BP, at the onset of the Bølling-Ållerød (B-A) event. The B-A event is characterized by higher water column denitrification rates comparable to the present day. The ISM signatures observed in the d18OC record of B-A event compare well with those from Timta cave of the western Himalayas and also the Asian summer monsoon signatures from the Hulu caves in China and warming signatures in Greenland Ice Sheet Project 2 (GISP2) suggesting atmospheric teleconnections through Intertropical Convergence Zone. The boundary between the Younger Dryas and the Holocene is discernible with small episodes of abrupt events of increased ISM intensity. This decrease in d18OC values at ~11.8 ka BP is contemporary with June solar insolation maximum at 30° north and the increase in methane in the GISP2 ice core supporting episodes of warmer climate and increase in ISM intensity. The ISM seems to have been most stable between 7 and 5.6 ka BP. The core exhibits periodicity of 500 years that is comparable to the Atlantic water formation and the Chinese monsoon.

Description of manganese nodules collected from the Hakuho Maru Cruise KH-71-5, Nov 1971-March 1973, Eastern North and South Pacific ocean

The cores and dredges described in this report were taken on the KH-71-5, Phoenix Expedition in Nov 1971 until March 1972 by the Ocean Research Institute, University of Tokyo from the R/V Hakuho Maru. A total of 13 cores and dredges sites have been recovered.

Evaluación de la involución, salud uterina y retorno de la actividad ovárica con la adición de zeolita 2% en la dieta basal de vacas lecheras

El objetivo de esta investigación fue evaluar el efecto de zeolita (Clinoptilolita) adicionado en la dieta basal de vacas lecheras durante 105 días, 60 días pre-parto (dap) y 45 días post-parto (dpp) y su influencia en la involución (IU) y salud uterina (SU), el retorno de la actividad ovárica (AO) y la condición corporal (CC). El proyecto se realizó en tres ganaderías de la comunidad de Soldados del Cantón Cuenca – Azuay, en 50 vacas secas, con una CC ≥ 3,5, entre 2 a 5 partos, clínicamente sanas y todas en las mismas condiciones sanitarias y de manejo; fueron divididas en un grupo control (n1=25), alimentadas con dieta basal y un experimental (n2=25), con dieta basal + 2% de Zeolita del consumo de materia (CMS). Se evaluó retorno de AO considerando folículos ≥ 10 mm de diámetro a los 15, 22, 35 y 45 dpp por Ultrasonografía transrectal, SU (>10 PMN) a los 35 dpp por cytobrush, IU considerando posición del útero con respecto a la pelvis (PU), simetría de los cuernos (SCU), y diámetro del cérvix (DC), a los 22 y 45 dpp por palpación rectal, y finalmente la CC a los 15 dap, parto y 45 dpp. Se usó un diseño completamente al azar (DCA) y los resultados fueron analizados con el programa estadístico SPSS versión 22.0, posteriormente fueron aplicados los estadísticos de “U de Mann Withney y Kruscall Wallis”. Se obtuvo eficacia en el GE con mayor porcentaje de vacas que retornaron su AO (respectivamente, para GC y GE fueron: 35 dpp 29,6% vs. 70,4%; 45 dpp 44,4% vs. 55,6%; p<0,05). La IU fue a los 45 dpp, los valores obtenido para GC y GE fueron: respectivamente, PU 40,0% vs. 76,0%, SCU 32,0% vs. 76,0% y DC 28,0% vs. 68,0%, (p<0,05). Y en SU también mostró eficacia en el GE obteniendo un 3,4% vs. 22,2% de PMN en comparación con el GC, (p<0,05). Finalmente, se comprobó diferencias significativas (p<0,05) en la CC al parto y 45 dpp con eficacia atribuida al GE. En conclusión, la adición de zeolita al 2% en la dieta basal mostró eficacia en la involución y salud uterina, retorno de la actividad ovárica y la condición corporal en vacas en transición, recomendando su uso en las ganaderías lecheras

Ceramic-veneered zirconia frameworks in full-arch implant rehabilitations: A 6-month to 5-year retrospective cohort study

Purpose: This was a retrospective cohort study designed to evaluate the clinical performance of ceramicveneered zirconia frameworks. Materials and Methods: Patients were recruited according to defined inclusion criteria. All patients were checked every 4 months from the time of definitive rehabilitation. At the end of 2013, all patients were rescheduled and rechecked for study purposes. The restorative procedures assessment was performed by previously established methods. The primary outcomes were the survival and success rates of the prosthesis. Descriptive statistics were used for the patient's demographics, implant distribution, and occurrence of complications. To study the survival and success of the prostheses, a Cox Regression analysis was used with a model constructed in a forward conditional stepwise mode. Predictive variables were included in the model, and adjusted survival curves were obtained for each outcome. Results: From 2008 to 2013, 75 patients were rehabilitated with 92 implant-supported, screw-retained, full-arch ceramic-veneered zirconia framework rehabilitations. The range of follow-up was between 6 months and 5 years. From the 92 full implant-supported screw-retained full-arch rehabilitations, Cox regression analysis indicated that within a 5-year time frame, the probability of framework fracture, major chipping, minor chipping, or any of the former combined to occur was 17.6%, 46.5%, 69.2%, and 90.5%, respectively. Conclusion: Results suggest zirconia as a suitable material for framework structure in implant-supported, full-arch rehabilitations. However, it experiences a high incidence of technical complications, mainly due to ceramic chipping. Further clinical studies should aim to ascertain the effects of clinical features and manufacturing procedures on the survival rates of these prostheses. © 2016 by Quintessence Publishing Co Inc.

Studio del metodo di preparazione di elettrocatalizzatori 3D Ag/Cu nella riduzione selettiva del 5-idrossimetilfurfurale

In questo lavoro di tesi sono stati preparati elettrocatalizzatori metallici 3D di argento supportato su schiume di rame a cella aperta, impiegandoli nella riduzione selettiva del 5-idrossimetilfurfurale (HMF) a 2,5-bisidrossimetilfurano (BHMF). L’utilizzo di questi supporti consente di incrementare l’area superficiale a disposizione, rispetto ai supporti 2D. La preparazione delle schiume è stata effettuata utilizzando due metodi di deposizione: spostamento galvanico ed elettrodeposizione. Lo scopo del lavoro è valutare l’influenza del metodo di deposizione sull’attività catalitica, per questo motivo le schiume bimetalliche ottenute sono state confrontate a quelle monometalliche di rame e argento. Inoltre è stato studiato l’effetto della concentrazione di HMF sulle prestazioni dei catalizzatori, con l’obiettivo finale di ottenere un sistema attivo a concentrazioni industriali. Le schiume sono state sottoposte a cicli di prove catalitiche a concentrazione di HMF crescente 0,02 M, 0,05 M e 0,10 M e caratterizzate prima e dopo la sequenza di prove con analisi SEM-EDS, XRD, spettroscopia raman. Le soluzioni sono state analizzate mediante ICP, GC-MS, ESI-MS. Con lo spostamento galvanico si ha la crescita di dendriti, formate prevalentemente sui bordi, e agglomerati di particelle nelle zone interne, mentre per elettrodeposizione si ottiene minore formazione di dendriti e particelle mediamente più piccole. La presenza di argento come fase attiva non migliora la conversione rispetto alle schiume monometalliche, ma causa un aumento di selettività ed efficienza faradica. Incrementando la concentrazione di HMF tutti i campioni presentano un aumento di conversione e un decremento di selettività ed efficienza faradica. Il catalizzatore ottenuto per spostamento galvanico, mostra prestazioni migliori a concentrazioni elevate e nelle prove di stabilità non dà segni di disattivazione, al contrario della schiuma preparata per elettrodeposizione che risulta leggermente disattivata.

Elettroriduzione selettiva del 5-idrossimetilfurfurale: studio dei parametri di reazione

I processi di riduzione del 5-idrossimetilfurfurale (HMF) sono generalmente condotti mediante processi che utilizzano calore e alte pressioni di H2. Una via alternativa prevede l’applicazione di processi elettrochimici, i quali richiedono condizioni più blande e non necessitano di H2. Il lavoro di tesi qui presentato si concentra sullo studio della elettoriduzione del 5-idrossimetilfurfurale a 2,5-bis(idrossimetil)furano, tramite l’utilizzo di catalizzatori basati su schiume 3D a cella aperta di Cu, sopra le quali viene depositato Ag tramite elettrodeposizione. La caratterizzazione elettrochimica è stata condotta tramite voltammetrie a scansione lineare fatte in tampone borato 0,5M e in HMF, seguite da cronoamperometrie (CA) e cronopotenziometrie (CP); inoltre sono stati valutati l’effetto dei parametri di reazione, quali concentrazione iniziale di reagente, potenziale applicato e densità di corrente applicata sulla conversione, selettività ed efficienza faradica. Le prove effettuate a due diverse concentrazioni di HMF (0,02M e 0,05M), con potenziale di -1,3V vs SCE, mostrano che all’aumentare della concentrazione di reagente si ha un calo della selettività in BHMF. Mantenendo la concentrazione a 0,05M e variando il potenziale applicato, si è osservato un aumento importante della selettività in BHMF a potenziali meno catodici e un calo della conversione a potenziali più catodici; la prova a -1,25V vs SCE fornisce i migliori risultati, tuttavia il tempo di reazione a questo potenziale è molto elevato, portando ad un netto calo della produttività. All’aumentare della densità di corrente si osserva un aumento della selettività in BHMF e una riduzione della conversione, mentre la FE è stabile.

The Crosslinking Degree Controls The Mechanical, Rheological, And Swelling Properties Of Hyaluronic Acid Microparticles.

Viscosupplements, used for treating joint and cartilage diseases, restore the rheological properties of synovial fluid, regulate joint homeostasis and act as scaffolds for cell growth and tissue regeneration. Most viscosupplements are hydrogels composed of hyaluronic acid (HA) microparticles suspended in fluid HA. These microparticles are crosslinked with chemicals to assure their stability against enzyme degradation and to prolong the action of the viscosupplement. However, the crosslinking also modifies the mechanical, swelling and rheological properties of the HA microparticle hydrogels, with consequences on the effectiveness of the application. The aim of this study is to correlate the crosslinking degree (CD) with these properties to achieve modulation of HA/DVS microparticles through CD control. Because divinyl sulfone (DVS) is the usual crosslinker of HA in viscosupplements, we examined the effects of CD by preparing HA microparticles at 1:1, 2:1, 3:1, and 5:1 HA/DVS mass ratios. The CD was calculated from inductively coupled plasma spectrometry data. HA microparticles were previously sized to a mean diameter of 87.5 µm. Higher CD increased the viscoelasticity and the extrusion force and reduced the swelling of the HA microparticle hydrogels, which also showed Newtonian pseudoplastic behavior and were classified as covalent weak. The hydrogels were not cytotoxic to fibroblasts according to an MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) assay. © 2014 Wiley Periodicals, Inc. J Biomed Mater Res Part A, 2014.

Assessment Of Robustness On Analysis Using Headspace Solid-phase Microextraction And Comprehensive Two-dimensional Gas Chromatography Through Experimental Designs.

Plackett-Burman experimental design was applied for the robustness assessment of GC×GC-qMS (Comprehensive Two-Dimensional Gas Chromatography with Fast Quadrupolar Mass Spectrometric Detection) in quantitative and qualitative analysis of volatiles compounds from chocolate samples isolated by headspace solid-phase microextraction (HS-SPME). The influence of small changes around the nominal level of six factors deemed as important on peak areas (carrier gas flow rate, modulation period, temperature of ionic source, MS photomultiplier power, injector temperature and interface temperature) and of four factors considered as potentially influential on spectral quality (minimum and maximum limits of the scanned mass ranges, ions source temperature and photomultiplier power). The analytes selected for the study were 2,3,5-trimethylpyrazine, 2-octanone, octanal, 2-pentyl-furan, 2,3,5,6-tetramethylpyrazine, and 2-nonanone e nonanal. The factors pointed out as important on the robustness of the system were photomultiplier power for quantitative analysis and lower limit of mass scanning range for qualitative analysis.

Cervical Injuries Scored According To The Subaxial Injury Classification System: An Analysis Of The Literature.

The Subaxial Injury Classification (SLIC) system and severity score has been developed to help surgeons in the decision-making process of treatment of subaxial cervical spine injuries. A detailed description of all potential scored injures of the SLIC is lacking. We performed a systematic review in the PubMed database from 2007 to 2014 to describe the relationship between the scored injuries in the SLIC and their eventual treatment according to the system score. Patients with an SLIC of 1-3 points (conservative treatment) are neurologically intact with the spinous process, laminar or small facet fractures. Patients with compression and burst fractures who are neurologically intact are also treated nonsurgically. Patients with an SLIC of 4 points may have an incomplete spinal cord injury such as a central cord syndrome, compression injuries with incomplete neurologic deficits and burst fractures with complete neurologic deficits. SLIC of 5-10 points includes distraction and rotational injuries, traumatic disc herniation in the setting of a neurological deficit and burst fractures with an incomplete neurologic deficit. The SLIC injury severity score can help surgeons guide fracture treatment. Knowledge of the potential scored injures and their relationships with the SLIC are of paramount importance for spine surgeons who treated subaxial cervical spine injuries.

Basilar Invagination: Surgical Results.

Basilar invagination (BI) is a congenital craniocervical junction (CCJ) anomaly represented by a prolapsed spine into the skull-base that can result in severe neurological impairment. In this paper, we retrospective evaluate the surgical treatment of 26 patients surgically treated for symptomatic BI. BI was classified according to instability and neural abnormalities findings. Clinical outcome was evaluated using the Nürick grade system. A total of 26 patients were included in this paper. Their age ranged from 15 to 67 years old (mean 38). Of which, 10 patients were male (38%) and 16 (62%) were female. All patients had some degree of tonsillar herniation, with 25 patients treated with foramen magnum decompression. Nine patients required a craniocervical fixation. Six patients had undergone prior surgery and required a new surgical procedure for progression of neurological symptoms associated with new compression or instability. Most of patients with neurological symptoms secondary to brainstem compression had some improvement during the follow-up. There was mortality in this series, 1 month after surgery, associated with a late removal of the tracheal cannula. Management of BI requires can provide improvements in neurological outcomes, but requires analysis of the neural and bony anatomy of the CCJ, as well as occult instability. The complexity and heterogeneous presentation requires attention to occult instability on examination and attention to airway problems secondary to concomitant facial malformations.