Primary structure and expression studies of the dihydrofolate reductase gene (DFRI) of Saccharomyces cerevisiae

The nucleotide sequence of a genomic DNA fragment thought previously to contain the dihydrofolate reductase gene (DFR1) of Saccharomyces cerevisiae by genetic criteria was determined. This DNA fragment of 1784' basepairs contains a large open reading frame from position 800 to 1432, which encodes a enzyme with a predicted molecular weight of 24,229.8 Daltons. Analysis of the amino acid sequence of this protein revealed that the yeast polypep·tide contained 211 amino acids, compared to the 186 residues commonly found in the polypeptides of other eukaryotes. The difference in size of the gene product can be attributed mainly to an insert in the yeast gene. Within this region, several consensus sequences required for processing of yeast nuclear and class II mitochondrial introns were identified, but appear not sufficient for the RNA splicing. The primary structure of the yeast DHFR protein has considerable sequence homology with analogous polypeptides from other organisms, especially in the consensus residues involved in cofactor and/or inhibitor binding. Analysis of the nucleotide sequence also revealed the presence of a number of canonical sequences identified in yeast as having some function in the regulation of gene expression. These include UAS elements (TGACTC) required for tIle amino acid general control response, and "TATA H boxes as well as several consensus sequences thought to be required for transcriptional termination and polyadenylation. Analysis of the codon usage of the yeast DFRl coding region revealed a codon bias index of 0.0083. this valve very close to zero suggestes 3 that the gene is expressed at a relatively low level under normal physiological conditions. The information concerning the organization of the DFRl were used to construct a variety of fusions of its 5' regulatory region with the coding region of the lacZ gene of E. coli. Some of such fused genes encoded a fusion product that expressed in E.coli and/or in yeast under the control of the 5' regulatory elements of the DFR1. Further studies with these fusion constructions revealed that the beta-galactosidase activity encoded on multicopy plasmids was stimulated transiently by prior exposure of yeast host cells to UV light. This suggests that the yeast PFRl gene is indu.ced by UV light and nlay in1ply a novel function of DHFR protein in the cellular responses to DNA damage. Another novel f~ature of yeast DHFR was revealed during preliminary studies of a diploid strain containing a heterozygous DFRl null allele. The strain was constructed by insertion of a URA3 gene within the coding region of DFR1. Sporulation of this diploid revealed that meiotic products segregated 2:0 for uracil prototrophy when spore clones were germinated on medium supplemented with 5-formyltetrahydrofolate (folinic acid). This finding suggests that, in addition to its catalytic activity, the DFRl gene product nlay play some role in the anabolisln of folinic acid. Alternatively, this result may indicate that Ura+ haploid segregants were inviable and suggest that the enzyme has an essential cellular function in this species.

Quantum Monte Carlo : some theoretical and numerical studies

In Part I, theoretical derivations for Variational Monte Carlo calculations are compared with results from a numerical calculation of He; both indicate that minimization of the ratio estimate of Evar , denoted EMC ' provides different optimal variational parameters than does minimization of the variance of E MC • Similar derivations for Diffusion Monte Carlo calculations provide a theoretical justification for empirical observations made by other workers. In Part II, Importance sampling in prolate spheroidal coordinates allows Monte Carlo calculations to be made of E for the vdW molecule var He2' using a simplifying partitioning of the Hamiltonian and both an HF-SCF and an explicitly correlated wavefunction. Improvements are suggested which would permit the extension of the computational precision to the point where an estimate of the interaction energy could be made~

Synthesis and spectral studies of methyl heterocylic systems

2-Carboxy-2?-methyldiphenyl sulfide was prepared by the Ullmann reaction and cyclodehydrated by sulfuric acid to afford 4-methylthioxanthone. 1-Methylthioxanthone was separated from the reaction mixture obtained upon cyclodehydration of 2-carboxy-3f-methyldiphenyl sulfide. In addition, 1-, 2-, 3- and 4-methylthioxanthone 10,10-dioxides were synthesized by oxidation of the corresponding thioxanthones. o-, m- and p-N-Tolylanthranilic acids were prepared by the Ullmann reaction and used as precursors for the preparation of 1-, 2- and 4- methyl-9-chloroacridine and finally 1-, 2-, 3- and 4-methylacridone. High resolution, 60 MHz PMR spectra were obtained on the four monomethyl isomers of xanthone, thioxanthone, thioxanthone 10,10-dioxide and acridone, and on 1-, 2- and 4-methyl-9-chloroacridine. For some compounds, coupling of all three different aromatic protons to the methyl was observed, two of the couplings typically being smaller than the third. With the large (ortho) coupling being on the order of 0.5 to 1.0 Hz, it was necessary to decouple the aromatic part of the spectrum. The magnitude of the ortho benzylic constant may be related to an incomplete Tr-bond delocalization in the molecules.

Kinetic and product studies for the oxidtion of organic sulfides and sulfoxides in the presence of transition metal complexes

Rates and products of the oxidation of diphenyl sulfide, phenyl methyl sulfide, p-chlorophenyl methyl sulfide and diphenyl sulfoxide have been determined. Oxidants included t-Bu02H alone, t-Bu02H plus molybdenum or vanadium catalysts and the molybdenum peroxo complex Mo0(02)2*HMPT. Reactions were chiefly carried out in ethanol at temperatures ranging from 20° to 65°C. Oxidation of diphenyl sulfide by t-Bu02H in absolute ethanol at 65°C followed second-order kinetics with k2 = 5.61 x 10 G M~1s"1, and yielded only diphenyl sulfoxide. The Mo(C0)g-catalyzed reaction gave both the sulfoxide and the sulfone with consecutive third-order kinetics. Rate = k3[Mo][t-Bu02H][Ph2S] + k^[Mo][t-Bu02H][Ph2S0], where log k3 = 12.62 - 18500/RT, and log k^ = 10.73 - 17400/RT. In the absence of diphenyl sulfide, diphenyl sulfoxide did not react with t-Bu02H plus molybdenum catalysts, but was oxidized by t-Bu02H-V0(acac)2. The uncatalyzed oxidation of phenyl methyl sulfide by t-Bu02H in absolute ethanol at 65°C gave a second-order rate constant, k = 3.48 x 10~"5 M^s""1. With added Mo(C0)g, the product was mainly phenyl methyl sulfoxide; Rate = k3[Mo][t-Bu02H][PhSCH3] where log k3 = 22.0 - 44500/RT. Both diphenyl sulfide and diphenyl sulfoxide react readily with the molybdenum peroxy complex, Mo0(02)2'HMPT in absolute ethanol at 35°C, yielding diphenyl sulfone. The observed features are mainly in agreement with the literature on metal ion-catalyzed oxidations of organic compounds by hydroperoxides. These indicate the formation of an active catalyst and the complexation of t-Bu02H with the catalyst. However, the relatively large difference between the activation energies for diphenyl sulfide and phenyl methyl sulfide, and the non-reactivity of diphenyl sulfoxide suggest the involvement of sulfide in the production of an active species.

Iridium(I) complexes of phenanthroline-derived benzimidazolylidenes : synthetic, structural and catalytic studies

N-heterocyclic carbenes (NHCs) have undergone rapid development in recent years. Due to their strong a-electron donation and structural variability properties, NHCs are becoming a major class of ligands in organometallic chemistry. Compared with the other two types of NHCs (imidazolylidenes and imidazolinylidenes), benzimidazolylidenes have not been well represented. Limited synthetic approaches may impede the development ofbenzimidazolylidenes. This thesis is focused on the synthesis of phenanthroline-derived benzimidazolylidene ligands and their metal complexes. A series of benzimidazolylidene-iridium complexes were synthesized and characterized spectroscopically and crystallographic ally. All of the new complexes showed varying degrees of catalytic activity and enantioselectivity toward transfer hydrogenation and asymmetric hydrogenation. The best results were achieved in hydrogenation of methyl-2-acetamidoacrylate, which afforded (-)-(R)-methyl-2-acetamidopropanoate in 97% yield and 81 % ee.

Experimental and Computational Studies on Copper and Hydrobenzoin Derivatives in Catalytic Asymmetric Reactions

The use of theory to understand and facilitate catalytic enantioselective organic transformations involving copper and hydrobenzoin derivatives is reported. Section A details the use of theory to predict, facilitate, and understand a copper promoted amino oxygenation reaction reported by Chemler et al. Using Density Functional Theory (DFT), employing the hybrid B3LYP functional and a LanL2DZ/6-31G(d) basis set, the mechanistic details were studied on a N-tosyl-o-allylaniline and a [alpha]-methyl-[gamma]-alkenyl sulfonamide substrate. The results suggest the N-C bond formation proceeds via a cisaminocupration, and not through a radical-type mechanism. Additionally, the origin of diastereoselection observed with [alpha]-methyl-[gamma]-alkenyl sulfonamide arises from avoidance of unfavourable steric interactions between the methyl substituent and the N -protecting group. Section B details the computationally guided, experimental investigation of two hydrobenzoin derivatives as ligands/ catalysts, as well as the attempted synthesis of a third hydrobenzoin derivative. The bis-boronic acid derived from hydrobenzoin was successful as a Lewis acid catalyst in the Bignielli reaction and the Conia ene reaction, but provided only racemic products. The chiral diol derived from hydrobenzoin successfully increased the rate of the addition of diethyl zinc to benzaldehyde in the presence of titanium tetraisopropoxide, however poor enantioinduction was obseverved. Notably, the observed reactivity was successfully predicted by theoretical calculations.

Oral French Communication in French Immersion Canadian and World Studies Classrooms: A Primer for Educators

This project presents a primer for secondary French Immersion teachers that facilitates the use of French oral communicative activities in secondary Canadian and World Studies courses. The primer supports collaborative and inclusive teaching strategies that invite students to speak and develop their oral French communication skills. The primer is divided into 2 main components: (a) Rationale for the Primer, and (b) the Strategies themselves, comprising succinct descriptions as well as potential uses and suggestions. A critical content analysis of various Ontario Ministry of Education documents was undertaken in order to explore the importance of oral communication in second-language learning in Ontario secondary schools. Furthermore, holistic and invitational education perspectives were examined in order to define the advantages of collaborative learning. Moreover, research in the stream of French Immersion studies was also referenced to frame the relevance of second-language learning and the significant role the French Immersion teacher plays. The aforementioned research contributes to the advancement of theory and practice regarding the importance of opportunities for oral French communication in secondary Canadian and World Studies courses.

Structural, Magnetic and Thermal Studies of Ce1-xEuxCrO3 Nano-Powders

A new series of nano-sized Ce1-xEuxCrO3 (x = 0.0 to 1.0) with an average particle size of 50 - 80 nm were synthesized using a solution combustion method. Nano-powders Ce1-xEuxCrO3 with the canted antiferromagnetic property exhibited interesting magnetic behaviours including the reversal magnetization and the exchange bias effect. The effect of europium doping as the ion with the smaller radius size and different electron con figuration on structural, magnetic and thermal properties of Ce1-xEuxCrO3 were investigated using various experimental techniques, i.e. DC/AC magnetic susceptibility, heat capacity, thermal expansion, Raman scattering, X-ray photoemission spectroscopy, transmission/scanning electron microscopy, X-ray powder diffraction and neutron scattering. An exchange bias effect, magnetization irreversibility and AC susceptibility dispersion in these samples confirmed the existence of the spin disorder magnetic phase in Ce1-xEuxCrO3 compounds. The exchange bias phenomenon, which is assigned to the exchange coupling between glassy-like shell and canted antiferromagnetic core, showed the opposite sign in CeCrO3 and EuCrO3 at low temperatures, suggesting different exchange interactions at the interfaces in these compounds. The energy level excitation of samples were examined by an inelastic neutron scattering which was in good agreement with the heat capacity data. Neutron scattering analysis of EuCrO3 was challenging due to the large neutron absorption cross-section of europium. All diffraction patterns of Ce1-xEuxCrO3 showed the magnetic peak attributed to the antiferromagnetic Cr3+ spins while none of the diffraction patterns could detect the magnetic ordering of the rare-earth ions in these samples.

Genome-wide location analysis and expression studies reveal a role for p110 CUX1 in the activation of DNA replication genes.

Proteolytic processing of the CUX1 transcription factor generates an isoform, p110 that accelerates entry into S phase. To identify targets of p110 CUX1 that are involved in cell cycle progression, we performed genome-wide location analysis using a promoter microarray. Since there are no antibodies that specifically recognize p110, but not the full-length protein, we expressed physiological levels of a p110 isoform with two tags and purified chromatin by tandem affinity purification (ChAP). Conventional ChIP performed on synchronized populations of cells confirmed that p110 CUX1 is recruited to the promoter of cell cycle-related targets preferentially during S phase. Multiple approaches including silencing RNA (siRNA), transient infection with retroviral vectors, constitutive expression and reporter assays demonstrated that most cell cycle targets are activated whereas a few are repressed or not affected by p110 CUX1. Functional classes that were over-represented among targets included DNA replication initiation. Consistent with this finding, constitutive expression of p110 CUX1 led to a premature and more robust induction of replication genes during cell cycle progression, and stimulated the long-term replication of a plasmid bearing the oriP replicator of Epstein Barr virus (EBV).

L’intégration du milieu naturel dans l’aménagement de quartiers de banlieue : le cas du Faubourg de la Pointe-aux-Prairies, Montréal

Les nombreux exemples réussis où l’aménagement du territoire intègre des milieux naturels nous ont amenée à nous questionner sur les techniques d’intégration des milieux naturels et les outils de planification disponibles au Québec. La présente recherche porte sur le volet environnemental du projet résidentiel le Faubourg de la Pointe-aux-Prairies à Montréal (FPP) situé dans l’Arrondissement Pointe-aux-Trembles/Rivière-des-Prairies/Montréal est. Un premier objectif relié aux résultats nous a permis d’analyser le taux de succès du quartier FPP à intégrer efficacement des préoccupations environnementales concernant la mise en valeur des milieux naturels. En nous basant sur le taux de conservation, l’intégrité écologique et les témoignages des intervenants de la Ville de Montréal, nous avons déterminé que le plan d’aménagement du projet présente un bilan environnemental mitigé. Un second objectif relié aux processus nous a permis de déterminer si les outils sollicités pendant la conception et la mise en œuvre du projet ont facilité l’intégration des milieux naturels. En nous basant sur les outils d’encadrement et proactifs utilisés tout au long de la mise en oeuvre, nous avons déterminé que ceux-ci sont inadaptés à certaines situations. La non intégration des milieux protégés dans les outils de planification, la destruction des milieux aquatiques avec l’accord du Ministère de l’environnement (MDDEP), le manque de vérification des ententes lors de l’attribution des certificats d’autorisation, l'absence de protection des milieux naturels terrestres et la difficulté d’évaluer les bénéfices économiques de l’intégration de la nature ont été les défis majeurs observés.

Réintroduire la multifonctionnalité des paysages en zone d’intensification agricole : contribution des approches intégrées en écologie du paysage

Depuis l’avènement de l’agriculture productiviste, les paysages des zones d’intensification agricole des pays industrialisés ont été marqués par la perte sévère de leur diversité et la dégradation de leurs fonctions environnementales, récréatives, esthétiques et sociales. Au moment où la qualité des paysages constitue un facteur clé du dynamisme des collectivités rurales, il devient urgent de développer des stratégies d’aménagement aptes à réintroduire le caractère multifonctionnel de ces paysages. Dans ce contexte, cette thèse propose un éclairage sur les enjeux d’aménagement de ces paysages sous l’angle des approches dialectiques en paysage issues de la Holistic Landscape Ecology. En développant un modèle conceptuel des trajectoires des paysages s’inscrivant dans les approches intégrées en paysage, elle établit une double lecture des dynamiques physico-spatiale et socioculturelle des paysages des zones d’intensification agricole afin d’en arriver à qualifier les écarts entre celles-ci. Pour y parvenir, elle prend appui sur une étude de cas d’un bassin versant agricole du sud du Québec. En puisant tantôt dans l’écologie du paysage, tantôt dans la sociologie du paysage, les résultats de cette thèse soulignent d’une part le poids des forces politiques et économiques dans le façonnement de ces paysages. Mais ils révèlent également le rôle des valorisations paysagères des agriculteurs dans la modulation de ces forces. Plus encore, l’étude des dynamiques socioculturelles révèle une diversité au sein des populations locales au plan des valorisations de ces paysages et des pratiques qui les façonnent qui vient renouveler l’image d’uniformité de ces territoires. Le maintien et l’accentuation de cette diversité apparaissent susceptibles de contribuer significativement à la réintroduction du caractère multifonctionnel des paysages au sein des zones d’intensification agricole. Des pistes concrètes pour l’aménagement concluent cette thèse.

Les effets du débat public dans la nouvelle ville de Montréal : regard sur le plan d'urbanisme et sa mise en oeuvre

Débat public, participation, délibération, autant de termes utilisés pour parler de normes et de dispositifs qui participeraient au nouvel « impératif délibératif » (Blondiaux et Sintomer 2002). Ce mémoire présente une analyse du débat public sur le plan d'urbanisme de Montréal avec un schéma d'analyse inspiré de celui de Simard et Fourniau (2007). Notre discussion du processus de débat porte non seulement sur la phase formelle des audiences publiques, mais aussi sur les étapes de concertation en amont et sur divers processus plus ou moins publicisés en aval. Ceci permet une réflexion d'ordre procédural plus riche qui considère la diversité des dispositifs dans une perspective de complémentarité. Pour chercher des effets du débat public sur le plan d'urbanisme, nous adoptons le parti de la congruence (Offner 1993), ce qui nous amène à une analyse de l'interaction entre des dynamiques contextuelles et des mobilisations des participants au débat. Certaines de ces congruences concordent avec des modifications au plan d'urbanisme. Notre étude propose aussi des implications du contexte particulier de la nouvelle ville de Montréal (avec la création des arrondissements) sur le contenu du débat public, sur certaines de ses manifestations procédurales ainsi que sur sa portée. Notre dernier chapitre montre que la dynamique du débat public en aval, dans la phase de mise en oeuvre du plan d'urbanisme, se déploie beaucoup plus dans les débats sur les grands projets que sur les mécanismes prévus à cette fin, qui comportent des embûches de par leur faible publicité et le caractère technique du processus réglementaire. Dans l'ensemble, notre étude met en lumière l'importance du contexte : autant le processus de débat que ses effets s'inscrivent dans des dynamiques contextuelles.

Tables de concertation et préservation du patrimoine, solution porteuse ou chimère ? : deux cas d’étude, le Vieux-Montréal et le mont Royal

La concertation est un phénomène récent, de plus en plus répandu. Elle s’applique à de nombreux domaines notamment en urbanisme et plus récemment à la protection du patrimoine. Elle semble être un outil approprié pour les autorités municipales afin de faire face aux conflits autour des projets d’aménagement particulièrement ceux liés à la protection du patrimoine. Notre questionnement porte sur l’apport de la concertation dans le domaine de la préservation du patrimoine et sur la pertinence des moyens mis en place pour atteindre un tel objectif. Les tables de concertation, en tant que processus de concertation, sont-elles appropriées pour la gestion des sites patrimoniaux ? À la lumière d’une discussion théorique sur le concept de la concertation en aménagement, nous faisons l’analyse comparative de deux Tables de concertation, celle du Vieux-Montréal et celle du Mont-Royal. Notre analyse porte sur l’évaluation du processus de concertation et sur la construction d’une vision globale pour le devenir des secteurs patrimoniaux concernés. L’objectif est de caractériser le processus de concertation utilisé à Montréal et d’en apprécier l’apport dans le domaine de la protection du patrimoine. L’analyse de nos deux cas d’étude révèle l’existence d’un processus de concertation propre à Montréal, avec ses caractéristiques spécifiques, mais qui reste à parfaire pour son optimisation. Notre recherche se conclut sur la nécessité d’améliorer le processus de concertation, tel qu’étudié, à travers un certain nombre de pistes à explorer.