Apomixia em Manihot esculenta e em seus híbridos interespecíficos

O objetivo deste trabalho foi estudar a citogenética e a morfologia do saco embrionário dos clones EB1 (Manihot esculenta Crantz) e EB12 (geração F3 de M. esculenta x M. glaziovii Muell), dos híbridos F1 e F2 de M. neusana Nassar x M. esculenta e da espécie silvestre M. neusana, para verificar o fenômeno da apomixia. Os óvulos foram analisados pelo método de clarificação. Foi verificada apomixia, do tipo apospórica, no clone EB12, no híbrido F2, e em M. neusana. Foi demonstrada a estrutura embriônica da mandioca; foram observados dois sacos embrionários no mesmo óvulo do híbrido F2.

Desempenho de clones de seringueira de origem amazônica no planalto do Estado de São Paulo

O objetivo deste trabalho foi avaliar a adaptabilidade e expressão fenotípica de caracteres superiores de dez clones amazônicos de seringueira (Hevea spp.) no planalto do Estado de São Paulo em um período de 10 anos, obedecendo ao delineamento de blocos ao acaso com três repetições e parcelas lineares de seis plantas. O clone IAN 3156 foi o mais produtivo, com média de 65,57 g de borracha seca/árvore/sangria, no período de quatro anos, seguido pelo clone RO 45 com 52,29 g de borracha seca/árvore/sangria, enquanto o clone-testemunha, RRIM 600, produziu 41,04 g/árvore/sangria. Todos os clones apresentaram crescimento vigoroso. O perímetro do caule na abertura do painel variou de 37,01 cm (IAN 3193) a 49,41 cm (IAN 4493). A porcentagem de plantas aptas à sangria variou de 30,0% (IAN 3703) a 93,75% (IAN 6323). Exceto os clones IAN 3156 e IAN 4493 com 7,00 mm e 6,32 mm, respectivamente, todos os outros clones apresentaram espessura de casca virgem inferior ao clone RRIM 600, que apresentou 6,18 mm. O clone IAN 3193 apresentou maior incidência de quebra do ponteiro pelo vento. Todos os clones estudados apresentaram baixa incidência de secamento de painel. O bom desempenho dos clones IAN 3156, RO 45, Fx 3899 e IAN 4493 permite que possam ser experimentados em larga escala, envolvendo diferentes ambientes no Estado de São Paulo.

The Th2 lymphoproliferation developing in LatY136F mutant mice triggers polyclonal B cell activation and systemic autoimmunity.

Lat(Y136F) knock-in mice harbor a point mutation in Tyr(136) of the linker for activation of T cells and show accumulation of Th2 effector cells and IgG1 and IgE hypergammaglobulinemia. B cell activation is not a direct effect of the mutation on B cells since in the absence of T cells, mutant B cells do not show an activated phenotype. After adoptive transfer of linker for activation of T cell mutant T cells into wild-type, T cell-deficient recipients, recipient B cells become activated. We show in vivo and in vitro that the Lat(Y136F) mutation promotes T cell-dependent B cell activation leading to germinal center, memory, and plasma cell formation even in an MHC class II-independent manner. All the plasma and memory B cell populations found in physiological T cell-dependent B cell responses are found. Characterization of the abundant plasmablasts found in secondary lymphoid organs of Lat(Y136F) mice revealed the presence of a previously uncharacterized CD93-expressing subpopulation, whose presence was confirmed in wild-type mice after immunization. In Lat(Y136F) mice, B cell activation was polyclonal and not Ag-driven because the increase in serum IgG1 and IgE concentrations involved Abs and autoantibodies with different specificities equally. Although the noncomplement-fixing IgG1 and IgE are the only isotypes significantly increased in Lat(Y136F) serum, we observed early-onset systemic autoimmunity with nephritis showing IgE autoantibody deposits and severe proteinuria. These results show that Th2 cells developing in Lat(Y136F) mice can trigger polyclonal B cell activation and thereby lead to systemic autoimmune disease.

Final antigenic Melan-A peptides produced directly by the proteasomes are preferentially selected for presentation by HLA-A*0201 in melanoma cells.

The melanoma-associated protein Melan-A contains the immunodominant CTL epitope Melan-A(26/27-35)/HLA-A*0201 against which a high frequency of T lymphocytes has been detected in many melanoma patients. In this study we show that the in vitro degradation of a polypeptide encompassing Melan-A(26/27-35) by proteasomes produces both the final antigenic peptide and N-terminally extended intermediates. When human melanoma cells expressing the corresponding fragments were exposed to specific CTL, those expressing the minimal antigenic sequence were recognized more efficiently than those expressing the N-terminally extended intermediates. Using a tumor-reactive CTL clone, we confirmed that the recognition of melanoma cells expressing an N-terminally extended intermediate of Melan-A is inefficient. We demonstrated that the inefficient cytosolic trimming of N-terminally extended intermediates could offer a selective advantage for the preferred presentation of Melan-A peptides directly produced by the proteasomes. These results imply that both the proteasomes and postproteasomal peptidases limit the availability of antigenic peptides and that the efficiency of presentation may be affected by conditions that alter the ratio between fully and partially processed proteasomal products.

Analyse des modifications de la chromatine impliquées dans l'effet barrière de CTF1 aux télomères humains

Eukaryotic genomes are compartmentalized in different structural domains that can affect positively or negatively gene expression. These regions of euchromatin and heterochromatin are characterized by distinct histones marks which can facilitate or repress gene transcription. The chromatin environment represents thus one of the main problems to control gene expression in biotechnological applications or gene therapy, since its expression is affected by the chromatin neighboring its locus of insertion. Some chromatin regions like telomeres are composed of constitutive heterochromatin which leads to the telomeric position effect (TPE) that silences genes adjacent to the telomere. TPE is known to spread by the selfrecruitment of the SIR histone deacetylase complex from the telomere in S.cerevisiae, but the histone marks that are associated to telomeric chromatin in mammalian cells remain mostly unknown. The transcription factor CTF1 has shown antisilencing properties in mammalian cells and also a boundary activity against TPE in yeast cells when fused to the yeast Gal4 DNA binding domain. In the work presented here, we describe a dual-reporter system to assess the boundary activity of proteins such as CTF1 at human telomeres. When located between the two reporter genes, CTF1 shields the telomere distal gene from TPE, while the telomereproximal gene remains silenced by telomeric heterochromatin. The boundary activity of CTF1 is shown to act regardless its function of transcriptional activator, by opposition to the transcriptional activator VP16 which activates indifferently both transgenes. Moreover, this study shows that CTF1 boundary activity is linked to its H3 binding function, as expected from a chromatin remodeler. ChIP experiments showed that histone deacetylation is the main histone modification involved in gene silencing at mammalian cell telomeres. Distinctly to yeast cells, the histone deacetylation signal in human cells extented over a short range along the chromosome. CTF1 may help to block this propagation and therefore to restore histones acetylation level on telomere protected locus. Surprisingly, other histone marks such as trimethyl-H3K9 or trimethyl-H4K20 were found on telomere protected locus, while in another clone, unsilencing of telomere distal transgene was associated with recruitment of the histone variant H2A.Z. Thus, I conclude that CTF1 displays a chromatin boundary function which is independent of its transcriptional activity and therefore exhibit features required for use as chromatin insulator in biotechnological applications. RESUME Les génomes eucaryotes sont compartementalisés en domaines structurels qui peuvent affecter positivement ou négativement l'expression des gènes avoisinants. Ces régions dites d'euchromatine ou d'hétérochromatine sont caractérisées par des modifications posttraductionnelles des histones qui peuvent faciliter ou au contraire inhiber la transcription des gènes qui s'y trouvent. Ainsi, isoler un gène de son environnement chromatinien est problème fréquent lorsqu'il s'agit de contrôler son expression dans le cadre d'applications en biotechnologie ou encore en thérapie génique. Certaines régions de chromatine telles que les télomères sont composées d'hétérochromatine constitutive qui mène au silençage des gènes avoisinants. Cet effet de position télomérique (TPE) est connu dans la levure S.cerevisiae comme se propageant par auto-recrutement du complexe de déacétylation d'histone SIR, alors que peu de modifications de chromatine ont pu être associées à ce phénomène dans les cellules de mammifères. Le facteur de transcription CTF1 a montré des propriétés d'anti-silençage dans les cellules de mammifères, ainsi qu'une activité barrière contre le silençage télomérique dans les cellules de levures lorsqu'il est fusionné au domaine de liaison à l'ADN de la protéine de levure Gal4. Dans le travail présenté ci-après est décrit un système à deux gènes rapporteurs permettant de mesurer l'activité barrière de protéines telles que CTF1 aux télomères humains, et les modifications de chromatine qui y sont associées. Lorsque CTF1 est placé entre les deux gènes rapporteurs, le gène distant du télomère est protégé du silençage qui lui est associé, alors que le gène proche du télomère reste soumis à ce silençage induit par l'hétérochromatine télomérique. L'activité barrière de CTF1 est montrée ici comme agissant indépendamment de son activité transcriptionnelle, par opposition à l'activateur transcriptionnel VP16 qui active indifféremment les deux transgènes. En outre, cette étude appuie l'hypothèse stipulant que CTF1 agisse comme remodeleur chromatinien puisqu'elle démontre que son activité barrière est directement dépendante de son activité de liaison avec l'histone H3. De plus, des expériences d'immuno-précipitation de la chromatine démontrent que la déacétylation des histones est le majeur phénomène intervenant dans le silençage télomérique. Par opposition à la levure, ce signal de déacétylation ne se propage dans les cellules humaines que sur une courte distance le long du chromosome. CTF1 agit ainsi en bloquant cette propagation et en restaurant le niveau d'acétylation des histones sur le locus protégé du télomère. De manière surprenante et inattendue, d'autres modifications d'histones telles que 4 les H3K9 et H4K20 triméthylées sont aussi observées à ce locus, tandis le recrutement du variant H2A.Z peut aussi être suffisant à restaurer l'expression du gène distant du télomère. En terme de cette analyse, CTF1 exhibe ainsi une fonction de barrière chromatinienne qui exclue une activité transcriptionnelle non désirée - propriété qui est requise dans l'établissement des isolateurs visant à permettre le contrôle d'un transgène dans le cadre d'applications en biotechnologies.

Proteasomal cleavage does not determine immunogenicity of gp100-derived peptides gp100 209-217 and gp100 209-217T210M.

Immune responses against tumor-associated antigens rely on efficient epitope presentation. The melanoma-associated antigen (Ag) gp100 contains HLA-A*0201 ligands that are characterized by low to medium binding affinity, among which gp100(209-217) is the most prominent (Kawakami et al., J Immunol 154:3961-3968, 1995). While this epitope is a natural T-cell target, it primes with low-efficiency T-cell responses during immunization. A modified gp100 epitope, gp100(209-217T210M), that contains a Thr to Met substitution at position 2 of the antigenic nonamer is characterized by high binding affinity for HLA-A*0201 and elicits strong and clinically effective T-cell responses. This higher affinity is believed to represent the sole reason for enhanced immunogenicity. Contrasting with this observation is the unpredictable relationship between affinity and immunogenicity observed in other antigen systems. In addition, we noted a striking difference between the capability of endogenously processed gp100(209-217) and gp100(209-217T210M) to induce T-cell responses in an in vitro model. Therefore, we questioned whether factors other than HLA-affinity might play a role in determining the immunogenicity of these epitopes. In the present study, we evaluated the in vitro proteasomal cleavages of 23meric precursor peptides encompassing the native sequence (gp100(201-223)) or the modified sequence (gp100(201-223T210M)). Here we show that the standard proteasome liberates the C-termini of both antigenic peptides but not the N-termini. Quantitative analysis of the digestion products revealed that more of the fragments displaying the final C-termini were produced from the wild-type precursor. However, a stronger TCR engagement was observed when fractions of digested gp100(201-223T210M) were used to activate an HLA-A*0201-expressing target T-cell clone. This difference was also found using separately produced, synthetic nonamers. In conclusion, the high binding affinity of gp100(209-217T210M) seems to compensate for possible differences in proteasomal cleavage at the biological level. Since the final antigenic nonamer is not directly produced by the proteasome, additional further factors may influence the antigenic peptide availability, such as post-proteasomal processing and intracellular peptide transport.

Avaliação do estado nutricional de seringais implantados na região da Zona da Mata de Minas Gerais

O objetivo deste trabalho foi avaliar o estado nutricional de seringais implantados na Zona da Mata, em Minas Gerais, visando contribuir com um programa racional de adubações. Em seringais do clone IAN 873 foram determinadas a classe do solo, fertilidade, nutrição e produção de borracha seca. Grande parte dos seringais encontra-se em Latossolos extremamente ácidos com Al alto e N, P, K, soma de bases trocáveis e capacidade de troca de cátions baixos. Os teores de Ca e Mg variaram de médios a altos nos Latossolos e foram muito altos nos Nitossolos, correlacionando-se negativamente com a produção de borracha seca. A análise foliar detectou desequilíbrios nutricionais no que se refere aos baixos teores de N e K evidenciados pela correlação positiva significativa com a produção de borracha seca. A correlação significativa negativa entre a produção de borracha seca e os teores de Ca foliares, associados aos altos teores de Mg, sugerem a redução desses nutrientes nas adubações. Dos micronutrientes, apenas o Cu apresentou correlação positiva e significativa com a produção de borracha seca.

Influência da irrigação e do genótipo na produção de castanha em cajueiro-anão-precoce

Avaliou-se a influência da irrigação e do genótipo na produção de castanha em cajueiro-anão-precoce (Anacardium occidentale L.) durante três anos. Foram estudados três clones (CP 09, CP 76 e CP 1001) e quatro regimes hídricos (testemunha sem irrigação e intervalos de irrigação de um, três e cinco dias). O delineamento experimental foi em blocos ao acaso, em parcelas subsubdivididas, com quatro repetições, com os regimes hídricos nas parcelas, os clones nas subparcelas, cada uma com quatro plantas, e os anos de produção nas subsubparcelas. A quantidade de água aplicada nos três tratamentos irrigados baseou-se na evaporação do tanque classe A. Em relação à produção de castanha, os clones de cajueiro-anão-precoce não apresentaram comportamento diferencial em resposta à irrigação; os clones CP 09 e CP 76 mostraram-se superiores ao CP 1001 quanto à estabilidade de safra; independentemente do regime hídrico estudado, o clone CP 76 mostrou-se menos produtivo do que os clones CP 09 e CP 1001.

Correlações inter e intragerações e herdabilidade de cor de chips, matéria seca e produção em batata

Os objetivos deste trabalho foram determinar correlações inter e intragerações clonais, estimar herdabilidade quanto à cor de chips, teor de matéria seca e produção de batata, e suas implicações na seleção. Duzentos e cinqüenta clones de dez famílias foram escolhidos aleatoriamente de uma população de primeira geração clonal, destinada ao processamento de batatas chips, do programa de melhoramento genético de batata da Embrapa-Centro de Pesquisa Agropecuária de Clima Temperado. Os clones foram avaliados em segunda (G2), terceira (G3) e quarta (G4) gerações, respectivamente, no outono e primavera de 1999, e outono de 2000, em Pelotas, RS. Os coeficientes de correlação entre gerações e as estimativas de herdabilidade dentro das gerações clonais foram baixas em relação à cor de chips, baixas a moderadas quanto à matéria seca e incrementais com as gerações nos componentes de produção. Os coeficientes de correlação entre as características de qualidade e os componentes de produção dentro de cada geração foram baixos e, na maioria, não-significativos. As estimativas de herdabilidade dos dados conjuntos da G3 e G4 foram moderada, moderadamente alta e alta, respectivamente, em relação à cor de chips, teor de matéria seca e produção.

Cytolytic T lymphocyte recognition of the murine cytomegalovirus nonstructural immediate-early protein pp89 expressed by recombinant vaccinia virus.

The murine immediate-early (IE) protein pp89 is a nonstructural virus-encoded phosphoprotein residing in the nucleus of infected cells, where it acts as transcriptional activator. Frequency analysis has shown that in BALB/c mice the majority of virus-specific CTL recognize IE antigens. The present study was performed to assess whether pp89 causes membrane antigen expression detected by IE-specific CTL. Site-directed mutagenesis has been used to delete the introns from gene ieI, encoding pp89, for subsequent integration of the continuous coding sequence into the vaccinia virus genome. After infection with the vaccinia recombinant, the authentic pp89 was expressed in cells that became susceptible to lysis by an IE-specific CTL clone. Priming of mice with the vaccinia recombinant sensitized polyclonal CTL that recognized MCMV-infected cells and transfected cells expressing pp89. Thus, a herpesviral IE polypeptide with essential function in viral transcriptional regulation can also serve as a dominant antigen for the specific CTL response of the host.

Fluorescence-activated cell sorting and cloning of bona fide CD8+ CTL with reversible MHC-peptide and antibody Fab' conjugates.

The isolation of subsets of Ag-specific T cells for in vitro and in vivo studies by FACS is compromised by the fact that the soluble MHC-peptide complexes and Abs used for staining, especially when combined, induce unwanted T cell activation and eventually apoptosis. This is especially a problem for CD8+ CTL, which are susceptible to activation-dependent cell death. In this study, we show that reversible MHC-peptide complexes (tetramers) can be prepared by conjugating MHC-peptide monomers with desthiobiotin (DTB; also called dethiobiotin) and multimerization by reaction with fluorescent streptavidin. While in the cold these reagents are stable and allow good staining, they rapidly dissociate in monomers at elevated temperatures, especially in the presence of free biotin. FACS cloning of Melan-A (MART-1)-specific CTL from a melanoma-infiltrated lymph node with reversible HLA-A2 Melan-A26-35 multimers yielded over two times more clones than when using the conventional biotin-containing multimers. CTL clones obtained by means of reversible multimers killed Melan-A-positive tumor cells more efficiently as compared with clones obtained with the stable multimers. Among the CTL obtained with the reversible multimers, but much less among those obtained with the stable multimers, a high proportion of clones exhibited high functional and physical avidity and died upon incubation with soluble MHC-peptide complexes. Finally, we show that Fab' of an anti-CD8 Ab can be converted in reversible DTB streptavidin conjugates the same way. These DTB reagents efficiently and reversibly stained murine and human CTL without affecting their viability.

Rescue of a non-viable accession and rapd analysis of recovered plants of Arachis retusa

In vitro regeneration of Arachis retusa was examined for the purpose of germplasm renewal and conservation. Random amplified polymorphic DNA (RAPD) fingerprinting was used to evaluate the genetic stability of plants derived from embryo axes and apical segments. Ten arbitrary decamer primers were screened and five of them were selected. Ninety genomic regions were evaluated, with an average of 18 loci per clone. All amplified segments were monomorphic. The results indicate that recovered plants are genetically stable at the assessed genomic regions and that both regeneration processes are suitable for in vitro germplasm preservation of Arachis species.

Repetibilidade de características agroindustriais em cana-de-açúcar

Os objetivos deste trabalho foram estabelecer estimativas de repetibilidade de características agroindustriais em 20 genótipos de cana-de-açúcar, determinar a previsibilidade de cada caráter e indicar a predição do valor verdadeiro de cada clone. O delineamento utilizado foi blocos casualizados, com cinco repetições. Utilizaram-se a análise de variância com dois fatores de variação (cortes e genótipos) e a análise dos componentes principais para estimar o coeficiente de repetibilidade der=0 width=19 height=21 id="_x0000_i1026" src="../../../../img/revistas/pab/v39n4/20437s1.gif" align=absmiddle>, a partir de três cortes. Foram obtidas estimativas de repetibilidade acima de 0,5 para fibra e toneladas de cana por hectare, em ambos os métodos, com confiabilidade maior que 84% pelo método dos componentes principais. As características que ficaram abaixo de 0,5, com previsibilidade inferior a 74%, necessitam de um maior número de avaliações. Os métodos dos componentes principais e análise de variância indicaram, em cinco cortes, uma previsibilidade maior que 80% para fibra, porcentagem de pol (sacarose) no caldo da cana, toneladas de cana por hectare e toneladas de pol no caldo da cana por hectare, embora o primeiro tenha sido mais eficiente. Considerando toneladas de cana por hectare e toneladas de pol no caldo da cana por hectare, os clones RB9371, RB9350 e RB9364 são os melhores.

Seleção de matrizes e clones de mangabeira para o cultivo in vitro

Altas taxas de mortalidade em viveiro de mudas de mangabeira (Hancornia speciosa) impedem seu uso na reversão do processo de degradação das terras e na manutenção da produtividade e integridade ambiental do Cerrado. O objetivo deste trabalho foi selecionar matrizes e clones, provenientes de propagação sexuada e assexuada, com potencial de propagação in vitro, para produção de mudas de mangabeira. Foram coletados frutos de 11 matrizes e de cada matriz selecionaram-se 24 sementes em bom estado fitossanitário. Após a desinfecção, as sementes foram inoculadas em meio MS, sem reguladores de crescimento, obtendo-se uma média de germinação de 92,4%, e as matrizes não apresentaram diferença significativa entre si. Na fase de multiplicação, em meio MS, com os reguladores de crescimento BAP (6-benzilaminopurina) e AIB (ácido indol-3-butírico), ambos na concentração de 1,28 mg L-1, a melhor matriz foi a C1 e o melhor clone foi o C1 15. Em todas as fases foi observada alta variabilidade, em menor porcentagem na matriz e maior porcentagem no clone dentro da matriz. A seleção deve ser realizada principalmente nos clones dentro da matriz.

Hospital outbreak of methicillin-resistant Staphylococcus aureus caused by a new, possibly hyperepidemic variant from a previously sporadic strain.

Objective: To describe an ongoing outbreak that tripled the annual detection of methicillin-resistant Staphylococcus aureus (MRSA) carriage in a tertiary care hospital. Methods: Active surveillance of MRSA is performed since 20 years in our hospital. Our protocol includes screening of patients transferred from high-incidence health-care institutions or countries, roommates of new MRSA cases, and wards where _2 patients acquired MRSA during the same week. Contact precautions are used for known carriers. PFGE was used for molecular typing until 2004, and was then replaced by Double-Locus Sequence Typing (DLST). Results: A median yearly incidence of 173 new carriers of MRSA was observed from 2002 to 2007. Since September 2008, an increasing number of new cases were observed, mainly as successive clusters limited to distinct wards, reaching a total of 398 until October 2009. The yearly incidence of new cases rose to 275 in 2008 and 613 in 2009. 60% of the cases were due to one strain: DLST 4−4, ST 228, SCCmecI. The incidence of new cases due to the previously predominant strains remained unchanged. The epidemic strain corresponded to a new variant of a clone responsible for a previous outbreak in 2001, and only sporadically isolated (mean of 20 cases/year) since then. A case- control study documented a significant association between acquisition of the epidemic strain and a stay in intensive and intermediary care units, a highest number of internal transfers, but did not identify a point source of transmission. Infection control practices and antibiotic policy had remained unchanged for several years. Compliance with handhygiene as monitored yearly was on the rise. Screening of 313 healthcare workers only found one carrier of the epidemic strain lately in the outbreak. Additional infection control measures were enforced, including screening at ICU admission and discharge with PCR-based rapid test, routine screening for all patients leaving epidemic wards, introduction of PCR-based rapid test for contact tracing, additional working forces for environmental disinfection, and hospital-wide education of healthcare workers. However, the outbreak was still ongoing after 5 months. Conclusions: Factors linked to the dissemination of this new variant in our institution remain undetermined. This unresolved outbreak suggests that this new variant acquired hyperepidemic properties, which calls for further investigations.