Value chain analysis for sea cucumber in the Philippines

This study examined the sea cucumber industry in the Philippines through the value chain lens. The intent was to identify effective pathways for the successful introduction of sandfish culture as livelihood support for coastal communities. Value chain analysis is a high-resolution analytical tool that enables industry examination at a detailed level. Previous industry assessments have provided a general picture of the sea cucumber industry in the country. The present study builds on the earlier work and supplies additional details for a better understanding of the industry's status and problems, especially their implications for the Australian Center for International Agricultural Research (ACIAR) funded sandfish project "Culture of sandfish (Holothuria scabra) in Asia- Pacific" (FIS/2003/059). (PDF contains 54 pages)

Assembly of viral genomes from metagenomes

Viral infections remain a serious global health issue. Metagenomic approaches are increasingly used in the detection of novel viral pathogens but also to generate complete genomes of uncultivated viruses. In silico identification of complete viral genomes from sequence data would allow rapid phylogenetic characterization of these new viruses. Often, however, complete viral genomes are not recovered, but rather several distinct contigs derived from a single entity are, some of which have no sequence homology to any known proteins. De novo assembly of single viruses from a metagenome is challenging, not only because of the lack of a reference genome, but also because of intrapopulation variation and uneven or insufficient coverage. Here we explored different assembly algorithms, remote homology searches, genome-specific sequence motifs, k-mer frequency ranking, and coverage profile binning to detect and obtain viral target genomes from metagenomes. All methods were tested on 454-generated sequencing datasets containing three recently described RNA viruses with a relatively large genome which were divergent to previously known viruses from the viral families Rhabdoviridae and Coronaviridae. Depending on specific characteristics of the target virus and the metagenomic community, different assembly and in silico gap closure strategies were successful in obtaining near complete viral genomes.

Self-assembly of metallated TPP porphyrin by external dipyridyl ligands

Póster presentado en: XXII International Congress and General Assembly of the International Union of Crystallography (UICr), 22–30 Agosto 2011. Madrid, España

Self-assembly of metalloporphyrins: first TPP-bipy coordination polymer with CoII (TPP=meso-tetraphenylporphyrin and bipy=4,4´-bipyridine)

Póster presentado en: 11th International Symposium on Applied Bioinorganic Chemistry. 2-5 Diciembre 2011. Barcelona, España (ISABC 2011)

Cartéis partidários e informação assimétrica em legislativos estaduais : os procedimentos de urgência no caso do Rio Grande do Sul (1999-2006)

O presente trabalho examina as razões dos procedimentos de urgência nos projetos do Executivo junto à Assembléia Legislativa do Estado do Rio Grande do Sul entre 1999-2006. Para tal, o texto discute os fundamentos e algumas implicações de teorias sobre a organização legislativa, especialmente as vertentes partidária e informacional, situando, primeiramente, o debate sobre a política regional gaúcha e as relações Executivo-Legislativo no âmbito subnacional brasileiro. O objetivo do estudo é analisar a rationale dos procedimentos de urgência utilizados pelo Governador, unilateralmente, e pelo próprio Legislativo, através de seu Colégio de Líderes, para acelerar a tramitação dos projetos do Executivo, retirando a matéria das Comissões permanentes antes da aprovação de parecer. Empiricamente, a pesquisa investiga se a presença de cartéis legislativos e a distância das preferências do Governo em relação às do mediano do Plenário da Assembléia têm efeitos sobre as chances de utilização de tais procedimentos. Assim, avalia a possibilidade de conjugação da teoria partidária com problemas informacionais para a análise do processo decisório legislativo no âmbito subnacional. O exame conclui que tanto a urgência governamental quanto o acordo de lideranças possuem padrões distintos apresentando resultados diversos que dependem do tamanho das forças políticas e da distribuição de preferências, figurando as instituições como fatores intervenientes, de modo que tais procedimentos obedecem a uma lógica partidária, mas colocada diante de problemas informacionais

Self-assembly of iron TCPP (meso-tetra(4-carboxyphenyl)porphyrin) into a chiral 2D coordination polymer

Artículo Polyhedron 2011

Economic assessment of shrimp (Penaeus monodon) hatchery industry in Panay Island, Philippines

Results of the economic assessment of shrimp hatchery industry in Panay Island, Philippines are presented. In order to ensure continuous viability of hatcheries, the critical areas of concern are: financing of operating capital and improvement of facilities; collective marketing efforts through cooperatives; updating of technology especially in disease prevention and control; and diversification strategies.

Growth of spiny lobster (Panulirus penicillatus) caught off San Vicente, Cagayan, Philippines

Estimates of growth parameters for male and female Panulirus penicillatus caught in coral reef areas off San Vicente, Cagayan, Philippines are presented. Length-weight relationship parameters are also given. The results indicate that the slope (b) is significantly below 3.0 and does not differ significantly between males and females.

Population parameters of small pelagic fishes caught off Tawi-Tawi, Philippines

Growth and mortality parameters, exploitation rates and annual recruitment patterns were estimated from monthly length-frequency samples for Sardinella longiceps, S. fimbriata, S. Albella, Decapterus macrosoma, Dipterygonatus balteatus, Rastrelliger faughni and Encrasicolina heteroloba. These results provide the first sets of stock parameter estimates for these species off Tawi-Tawi, Philippines. The growth parameters derived were found comparable with previous estimates available for the same species from other localities. Recruitment was noted to be year-round and bimodal. Estimates of fishing mortality and exploitation rate were found to be presently above appropriate levels.

Collaborative training program in coastal management in the Philippines: a local initiative with a global perspective

A collaborative project in developing a broad-based coastal management training program in the Philippines is being undertaken by a group of government and nongovernment agencies. It addresses the lack of expertise in planning an implementation for coastal management in the country. The process will be documented to serve as a guide in starting and maintaining the process of collaborative training in coastal management in the region. Other training initiatives are outlined including regional and global efforts.

Management of mangrove areas in Calauag Bay, Quezon Province, Philippines

The findings are presented of a study conducted in Calauag Bay, Quezon Province, Philippines in order to estimate resource rent of mangrove areas converted to fishpond production. The rents were calculated based on the technology practised by the farmers and the prices of inputs and outputs that prevailed during the study period. The major causes of mangrove depletion are cutting of mangroves for fuelwood and charcoal and clearing for fishpond development. It was concluded that there is justification for the government to increase the feed which could be used to rehabilitate the inland-coastal fisheries to improve productivity and ensure sustainability of the ecosystem for future generations.

Pig-duck-fish-azolla integration in La Union, Philippines

Three studies on pig-duck-fish-azolla integration were conducted simultaneously in La Union, Philippines. Growth performance of pigs and ducks as affected by different levels of azolla meal in their feed, and that of tilapia (Oreochromis niloticus) under varying stocking rates are presented and discussed.

Length-weight relationship of five serranids from Palawan Island, Philippines

The parameters a and b of the length-weight relationship (LWR) of the form W=aLb are presented for five species of serranids belonging to the genus Cephalopolis. The fish samples used for the study were caught by hook and line, fish corrals, and spearguns during August 1995 to December 1998 from the waters around Palawan Island, Philippines. Information on the LWR of six fishes from other studies conducted in Palawan is also provided.