Role of transducer proteins in photoaxis signaling of Halobacterium salinarum

In Halobacterium salinarum phototaxis is mediated by the visual pigment-like photoreceptors sensory rhodopsin I (SRI) and II (SRII). SRI is a receptor for attractant orange and repellent UV-blue light, and SRII is a receptor for repellent blue-green light, and transmit signals through the membrane-bound transducer proteins HtrI and HtrII, respectively. ^ The primary sequences of HtrI and HtrII predict 2 transmembrane helices (TM1 and TM2) followed by a hydrophilic cytoplasmic domain. HtrII shows an additional large periplasmic domain for chemotactic ligand binding. The cytoplasmic regions are homologous to the adaptation and signaling domains of eubacterial chemotaxis receptors and, like their eubacterial homologs, modulate the transfer of phosphate groups from the histidine protein kinase CheA to the response regulator CheY that in turn controls flagellar motor rotation and the cell's swimming behavior. HtrII and Htrl are dimeric proteins which were predicted to contain carboxylmethylation sites in a 4-helix bundle in their cytoplasmic regions, like eubacterial chemotaxis receptors. ^ The phototaxis transducers of H. salinarum have provided a model for studying receptor/tranducer interaction, adaptation in sensory systems, and the role of membrane molecular complexes in signal transduction. ^ Interaction between the transducer HtrI and the photoreceptor SRI was explored by creating six deletion constructs of HtrI, with progressively shorter cytoplasmic domains. This study confirmed a putative chaperone-like function of HtrI, facilitating membrane insertion or stability of the SRI protein, a phenomenon previously observed in the laboratory, and identified the smallest HtrI fragment containing interaction sites for both the chaperone-like function and SRI photocycle control. The active fragment consisted of the N-terminal 147 residues of the 536-residue HtrI protein, a portion of the molecule predicted to contain the two transmembrane helices and the first ∼20% of the cytoplasmic portion of the protein. ^ Phototaxis and chemotaxis sensory systems adapt to stimuli, thereby signaling only in response to changes in environmental conditions. Observations made in our and in other laboratories and homologies between the halobacterial transducers with the chemoreceptors of enteric bacteria anticipated a role for methylation in adaptation to chemo- and photostimuli. By site directed mutagenesis we identified the methylation sites to be the glutamate pairs E265–E266 in HtrI and E513–E514 in HtrII. Cells containing the unmethylatable transducers are still able to perform phototaxis and adapt to light stimuli. By pulse-chase analysis we found that methanol production from carboxylmethyl group hydrolysis occurs upon specific photo stimulation of unmethylatable HtrI and HtrII and is due to turnover of methyl groups on other transducers. We demonstrated that the turnover in wild-type H. salinarum cells that follows a positive stimulus is CheY-dependent. The CheY-feedback pathway does not require the stimulated transducer to be methylatable and operates globally on other transducers present in the cell. ^ Assembly of signaling molecules into architecturally defined complexes is considered essential in transmission of the signals. The spectroscopic characteristics of SRI were exploited to study the stoichiometric composition in the phototaxis complex SRI-HtrI. A molar ratio of 2.1 HtrI: 1 SRI was obtained, suggesting that only 1 SRI binding site is occupied on the HtrI homodimer. We used gold-immunoelectron microscopy and light fluorescence microscopy to investigate the structural organization and the distribution of other halobacterial transducers. We detected clusters of transducers, usually near the cell's poles, providing a ultrastructural basis for the global effects and intertransducer communication we observe. ^

Impact of geomagnetic excursions on atmospheric chemistry and dynamics

Geomagnetic excursions, i.e. short periods in time with much weaker geomagnetic fields and substantial changes in the position of the geomagnetic pole, occurred repeatedly in the Earth's history, e.g. the Laschamp event about 41 kyr ago. Although the next such excursion is certain to come, little is known about the timing and possible consequences for the state of the atmosphere and the ecosystems. Here we use the global chemistry climate model SOCOL-MPIOM to simulate the effects of geomagnetic excursions on atmospheric ionization, chemistry and dynamics. Our simulations show significantly increased concentrations of nitrogen oxides (NOx) in the entire stratosphere, especially over Antarctica (+15%), due to enhanced ionization by galactic cosmic rays. Hydrogen oxides (HOx) are also produced in greater amounts (up to +40%) in the tropical and subtropical lower stratosphere, while their destruction by reactions with enhanced NOx prevails over the poles and in high altitudes (by −5%). Stratospheric ozone concentrations decrease globally above 20 km by 1–2% and at the northern hemispheric tropopause by up to 5% owing to the accelerated NOx-induced destruction. A 5% increase is found in the southern lower stratosphere and troposphere. In response to these changes in ozone and the concomitant changes in atmospheric heating rates, the Arctic vortex intensifies in boreal winter, while the Antarctic vortex weakens in austral winter and spring. Surface wind anomalies show significant intensification of the southern westerlies at their poleward edge during austral winter and a pronounced northward shift in spring. Major impacts on the global climate seem unlikely.

Imaging the Heliosphere using neutral Atoms from Solar Wind Energy down to 15 eV

We study the spatial and temporal distribution of hydrogen energetic neutral atoms (ENAs) from the heliosheath observed with the IBEX-Lo sensor of the Interstellar Boundary EXplorer (IBEX) from solar wind energies down to the lowest available energy (15 eV). All available IBEX-Lo data from 2009 January until 2013 June were included. The sky regions imaged when the spacecraft was outside of Earth's magnetosphere and when the Earth was moving toward the direction of observation offer a sufficient signal-to-noise ratio even at very low energies. We find that the ENA ribbon—a 20° wide region of high ENA intensities—is most prominent at solar wind energies whereas it fades at lower energies. The maximum emission in the ribbon is located near the poles for 2 keV and closer to the ecliptic plane for energies below 1 keV. This shift is an evidence that the ENA ribbon originates from the solar wind. Below 0.1 keV, the ribbon can no longer be identified against the globally distributed ENA signal. The ENA measurements in the downwind direction are affected by magnetospheric contamination below 0.5 keV, but a region of very low ENA intensities can be identified from 0.1 keV to 2 keV. The energy spectra of heliospheric ENAs follow a uniform power law down to 0.1 keV. Below this energy, they seem to become flatter, which is consistent with predictions. Due to the subtraction of local background, the ENA intensities measured with IBEX agree with the upper limit derived from Lyα observations.

Sich erlaufen. Pilgern als Identitätsstärkung

Against the background of an unexpected upswing in pilgrimages, this article states the thesis that pilgrimage enables a strengthening of one’s identity. In addition, the problem of a fragmented and indefinite identity is sketched, with reference to Zygmunt Bauman. In contrast stands a model of identity (connected with Albrecht Grçzinger) in which one contributes to a tradition in which one already is situated. In its main part, the article investigates the various factors of pilgrimage that contribute to this process of gaining one’s identity. Thus, a route frequented as much as theWay of St. James forms an already patterned space that offers the pilgrim traditioned roles to adopt. Walking, as a characteristic element of pilgrimage, is interpreted as physically generating and distinctively opening the space in which pilgrims understand themselves in the world. It also can be shown how walking as a form of physical being that leads from an instrumental relationship to one’s body to an immediate being in living one’s life, conveys certainty about one’s self and the world, activates one’s potential to overcome challenges, and provides self-empowerment. The author makes a strong case for a definition of pilgrimage oriented to an understanding of the hardship of crossing a foreign land, which is an image of a goal-oriented understanding of existence. The resulting poles of self-assurance and self-estrangement in pilgrimage are, in connection with Wilhelm Gräb, interpreted as an expression of a truly known but at the same time distanced self-understanding. Pilgrimage is therefore a form of physical self-interpretation in which people learn to view and be aware of their self-familiarity. Finally, against the background of this representation, criteria are elaborated for organizing a pilgrimage journey that is conducive to identity.

Electron cryomicroscopy of E. coli reveals filament bundles involved in plasmid DNA segregation.

Bipolar elongation of filaments of the bacterial actin homolog ParM drives movement of newly replicated plasmid DNA to opposite poles of a bacterial cell. We used a combination of vitreous sectioning and electron cryotomography to study this DNA partitioning system directly in native, frozen cells. The diffraction patterns from overexpressed ParM bundles in electron cryotomographic reconstructions were used to unambiguously identify ParM filaments in Escherichia coli cells. Using a low-copy number plasmid encoding components required for partitioning, we observed small bundles of three to five intracellular ParM filaments that were situated close to the edge of the nucleoid. We propose that this may indicate the capture of plasmid DNA within the periphery of this loosely defined, chromosome-containing region.

One-stage (Warsaw) and two-stage (Oslo) repair of unilateral cleft lip and palate: Craniofacial outcomes

The aim of this study was to compare facial development in subjects with complete unilateral cleft lip and palate (CUCLP) treated with two different surgical protocols. Lateral cephalometric radiographs of 61 patients (42 boys, 19 girls; mean age, 10.9 years; SD, 1) treated consecutively in Warsaw with one-stage repair and 61 age-matched and sex-matched patients treated in Oslo with two-stage surgery were selected to evaluate craniofacial morphology. On each radiograph 13 angular and two ratio variables were measured in order to describe hard and soft tissues of the facial region. The analysis showed that differences between the groups were limited to hard tissues – the maxillary prominence in subjects from the Warsaw group was decreased by almost 4° in comparison with the Oslo group (sella-nasion-A-point (SNA) = 75.3° and 79.1°, respectively) and maxillo-mandibular morphology was less favorable in the Warsaw group than the Oslo group (ANB angle = 0.8° and 2.8°, respectively). The soft tissue contour was comparable in both groups. In conclusion, inter-group differences suggest a more favorable outcome in the Oslo group. However, the distinctiveness of facial morphology in background populations (ie, in Poles and Norwegians) could have contributed to the observed results.

A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis

The Chromatin Accessibility Complex (CHRAC) consists of the ATPase ISWI, the large ACF1 subunit and a pair of small histone-like proteins, CHRAC-14/16. CHRAC is a prototypical nucleosome sliding factor that mobilizes nucleosomes to improve the regularity and integrity of the chromatin fiber. This may facilitate the formation of repressive chromatin. Expression of the signature subunit ACF1 is restricted during embryonic development, but remains high in primordial germ cells. Therefore, we explored roles for ACF1 during Drosophila oogenesis. ACF1 is expressed in somatic and germline cells, with notable enrichment in germline stem cells and oocytes. The asymmetrical localization of ACF1 to these cells depends on the transport of the Acf1 mRNA by the Bicaudal-D/Egalitarian complex. Loss of ACF1 function in the novel Acf1(7) allele leads to defective egg chambers and their elimination through apoptosis. In addition, we find a variety of unusual 16-cell cyst packaging phenotypes in the previously known Acf1(1) allele, with a striking prevalence of egg chambers with two functional oocytes at opposite poles. Surprisingly, we found that the Acf1(1) deletion - despite disruption of the Acf1 reading frame - expresses low levels of a PHD-bromodomain module from the C-terminus of ACF1 that becomes enriched in oocytes. Expression of this module from the Acf1 genomic locus leads to packaging defects in the absence of functional ACF1, suggesting competitive interactions with unknown target molecules. Remarkably, a two-fold overexpression of CHRAC (ACF1 and CHRAC-16) leads to increased apoptosis and packaging defects. Evidently, finely tuned CHRAC levels are required for proper oogenesis.

VIS-NIR reflectance of water ice/regolith analogue mixtures and implications for the detectability of ice mixed within planetary regoliths

Permanently shadowed regions at the poles of the Moon and Mercury have been pointed out as candidates for hosting water ice at their surface. We have measured in the laboratory the visible and near infrared spectral range (VIS-NIR) bidirectional reflectance of intimate mixtures of water ice and the JSC-1AF lunar simulant for different ice concentrations, particle sizes, and measurement geometries. The nonlinearity between the measured reflectance and the amount of ice in the mixture can be reproduced to some extent by the mixing formulas of standard reflectance models, in particular, those of Hapke and Hiroi, which are tested here. Estimating ice concentrations from reflectance data without knowledge of the mixing coefficientsstrongly dependent on the size/shape of the grainscan result in large errors. According to our results, it is possible that considerable amounts of water ice might be intimately mixed in the regolith of the Moon and Mercury without producing noticeable photometric signatures.

(Table 1) Summary of general lithology in IODP Exp302 cores

The Cenozoic ice-rafted debris (IRD) history of the central Arctic is reconstructed utilizing the terrigenous coarse sand fraction in IODP 302 cores from 0 to 273 meters composite depth. This Holocene - middle Eocene quantitative record of terrigenous sand accumulation on the Lomonosov Ridge, along with qualitative information on grain texture and composition, confirms the interpretation that ice initiation (sea ice and glacial ice) occurred ~46 Ma in the Arctic, and provides a long-term pattern of Arctic ice expansion and decay since the middle Eocene. IRD mass accumulation rates range from 0 to 0.13 g/cm2/ka in the middle Eocene and from 0 to 0.36 g/cm2/ka in the Neogene. IRD mass accumulation rate (MAR) maxima in the Miocene and Pliocene cooccur with either glacial initiation or intensification in the sub-Arctic. The 46.25 Ma IRD onset in the central Arctic slightly precedes the earliest evidence of ice in the Antarctic, and compares in timing with a >1000 ppm decrease in atmospheric concentrations of CO2. The decline of pCO2 in the middle Eocene may have driven both poles across the temperature threshold that enabled the nucleation of glaciers on land and partial freezing of the surface Arctic Ocean, especially during times of low insolation.

(Table 1) Remanence properties of samples from ODP Core 126-792A-7H

A combination of high sedimentation rates and high concentrations of magnetic grains in cores from Ocean Drilling Program Leg 126 resulted in the recovery of detailed direction and intensity records of the Brunhes/Matuyama geomagnetic polarity reversal. Virtual geomagnetic poles (VGPs) computed from azimuthally oriented samples taken from the cores of Hole 792A in the western Izu-Bonin forearc basin reveal that the geomagnetic pole persisted at moderate to high southern latitudes for several thousand years before a rapid migration to northern latitudes. Alternating-field demagnetization behavior, as well as NRM, NRM/ARM, and NRM/IRM intensities for samples from this same interval, and the NRM/IRM intensities derived from unoriented core samples from Holes 790C and 791B, drilled in the ~100-km distant Sumisu Rift, all suggest that the dipole field oscillated widely in intensity before the reversal. The fast polarity change occurred at the low point of an ~1100-yr field intensity cycle. This "reversal cycle" immediately followed earlier intensity cycles whose peaks rivaled or surpassed the normalized intensities of discrete samples from well above and below the reversal interval; furthermore, the troughs indicate a much diminished dipole field at their nadir.

(Table 1) Bulk geochemistry of some lavas at DSDP Hole 55-433C

According to Wilson's (1963a, b) hypothesis, the volcanoes of the Hawaiian-Emperor Chain are formed as the Pacific lithospheric plate moves over a source of magma in the mantle. Morgan (1971, 1972) proposed that these "hot spots" resulted from "mantle plumes" that rise vertically from the core/mantle boundary and that are fixed about the deep mantle and rotating globe poles. The age of volcanoes increases with distance away from the recent "hot spot" beneath Kilauea volcano. The Hawaiian-Emperor bend indicates that the direction of motion of the Pacific plate changed about 40 m.y. ago.

El trabajo de derribar antinomias : los intentos de Helmut Plessner y Talcott Parsons

La relación entre comunidad y sociedad puede rastrearse de los orígenes de la sociología hasta la actualidad. Fue un punto central en el pensamiento de la segunda generación de padres fundadores -Durkheim, Tönnies, Weber-, lo fue luego en la sociología de Talcott Parsons, y es aún un fuerte centro de debate entre las diversas corrientes contemporáneas, tanto dentro de la sociología como en las ciencias políticas y la filosofía. En este sentido, la relación comunidad-sociedad continúa hasta el día de hoy suscitando polémicas e inspirando numerosos y sugerentes trabajos. No obstante, si bien en sus diferentes tratamientos presenta incontables diferencias, un elemento común es analizar la relación como dos polos excluyentes y antitéticos. Este trabajo se propone describir cómo dos pensadores provenientes de corrientes diferentes como Talcott Parsons y Helmut Plessner buscaron pensar ambos conceptos -comunidad y sociedad- no cómo elementos excluyentes, sino como dimensiones necesarias y presentes en todo nivel de la vida humana. Así, la intención es demostrar cómo dichos autores lograron integrar ambas dimensiones, a la vez que advertir sobre las consecuencias y dificultades de los intentos de superación o eliminación de esta relación.

El pensamiento binario y sus salidas : hibridez, pluricultura, paridad y mestizaje

Tal como lo han analizado autores contemporáneos como E. Grüner, E. Lander y A. Mbembe, la forma que adopta el pensamiento occidental es binaria, es decir que se encuentra constituida por dos categorías exclusivas y excluyentes, por pares antagónicos, por polos opuestos. Binaria asimismo es la construcción de las identidades en Occidente, sean éstas identidades de género, de clase, étnicas o políticas. En el presente trabajo nos concentraremos en las teorizaciones de algunos autores del pensamiento poscolonial que, al cruzar las dimensiones ontológica, epistemológica y política de las cosmovisiones y de las identidades, aportaron elementos para la deconstrucción de este binarismo. H. Bhabha, R. Segato, R. Paiva y G. Anzaldúa delinearon, a nuestro entender, posibles salidas a esta cosmovisión identitaria, muy especialmente a través de sus conceptos clave de 'hibridez', pluricultura', 'paridad' y 'mestizaje'.

Ecología y praxis ambiental : Una revisión de presupuestos

Esta tesis problematiza los vínculos entre las sociedades y sus entornos. "Ecología" y "Praxis Ambiental" constituyen dos polos en tensión. Son palabras que remiten a sistemas de entidades Ecología y Praxis Ambiental, lejos de constituirse desde una red semántica y simbólica afín, aparecen en las prácticas como términos muchas veces antagónicos. Vivimos en un mundo afectado por una crisis ambiental sin parangones producto de las intervenciones humanas en el contexto de las prácticas productivas capitalistas globalizadas. Esta tesis busca contrastar ciertas conceptualizaciones abstractas con los fenómenos concretos cuya contundencia se nos impone. Sigo un camino que parte de la revisión de la ecología como disciplina científica, su articulación (o no) con los movimientos ambientalista para, desde estos sitios de acción, investigación y movilización, avanzar sobre los temas que permanecen como problemas. Tomé como guía la problemática dualidad sobre la que se edificó el pensamiento y la praxis moderna: la escisión antagónica y excluyente entre sociedad y naturaleza, asociada a la idea del hombre como ser de máximo desarrollo, cuya cercanía a la razón permitía justificar su dominio sobre todo lo no-humano, fundamento de la evaluación de lo diferente en términos peyorativos. Exploro el modo en que "lo natural" se consideró como menos desarrollado, con potencialidades que sólo lograría en caso de estar dominado por un ser efectivamente desarrollado y adopto las revisiones en torno a conceptos claves como género, etnia y clase para discutir la noción de naturaleza que subyace en esa presunción de dominio. La metodología de estudio siguió algunas premisas. La primera de ellas es que la edificación de las ideas es un proceso eminentemente histórico. La segunda es que los conceptos, lejos de edificarse desde ejercicios abstractos, se constituyen en permanente vínculo con el plano de las prácticas. La tercera es que en el fondo de la red simbólica antes mencionada se encuentra el paternalismo como diferenciación fundamental. A modo de esquema general, las herramientas adoptadas para analizar escenarios y elaborar reflexiones pueden resumirse en los siguientes puntos:La indagación en las formas hegemónicas de discurso-dominio en la ecología científica. La apropiación de la perspectiva feminista como discurso contrahegemónico.La revisión de las formas específicas de dominio como clave reconstructiva.El análisis de las prácticas instituidas, en las prácticas científicas y las esferas de gobierno, a la luz de modos alternativos que implican el reconocimiento de prácticas sociales y saberes edificados desde la experiencia.A partir de remover la idea de naturaleza que subyace en las reflexiones problematizadas, impugno que la única organización social posible sea jerárquica. Desde aquí argumento en contra de uno de los principales argumentos totalitarios, la visión de los intereses de la naturaleza como opuestos a los humanos, destacando la necesidad de abandonar la dualidad para no llegar al consecuente incremento de formas opresivas. En el cierre desmonto el carácter construido de lo normal, desnaturalizo lo natural para repensarnos como seres humanos capaces de cambiar aquello que consideramos injusto.

Cambios en la estructura económica social y conflictos sociales en el noroeste del Chubut 1990-2005

Buscamos avanzar en el conocimiento sobre cómo se desarrolla el movimiento de la sociedad argentina en su conjunto, analizado desde un caso particular que es el noreste del Chubut en el período que va desde la imposición de la hegemonía del capital financiero en 1989-1990 hasta el año 2005. Se pretende en esta tesis entender y conceptualizar en términos científicos cómo se mueve esa sociedad, de qué son expresión cada uno de sus conflictos, qué expresan los distintos sectores que se movilizan, qué expresan los cambios estructurales que se desarrollan, etc. Desde esta perspectiva nos interesa específicamente poder aportar al debate sobre cuáles son las opciones de plantear un proyecto alternativo de desarrollo para la provincia, la región y el país. Dentro del tema general de buscar comprender el movimiento de la sociedad, realizamos un abordaje de la realidad desde la utilización de un conocimiento acumulado y desde un recorte de esa realidad. Ese recorte lo realizamos a dos niveles. En primer lugar en términos espaciales: tomamos como base una región que denominamos el noreste de Chubut. Recortamos de la provincia del Chubut al área que tuvo el mayor crecimiento vinculado a los programas de polos de desarrollo durante las décadas del '60, '70 y parte del '80. La misma está delimitada por los actuales departamentos de Rawson y Biedma, de acuerdo a la división administrativa que toma la provincia desde 1957. En segundo lugar realizamos un recorte en términos temporales: abordamos como objeto de estudio al movimiento de la sociedad en esa región durante el período que va de 1989-1990 hasta el 2005. Consideramos que tomar este período nos permite observar el proceso de cambios que se generan con la realización de la hegemonía del capital financiero y el proceso de protestas, luchas y conflictos sociales que en el marco de estos cambios se desarrollan en la sociedad. La decisión de estudiar hasta el 2005 parte de considerar relevante comprender cómo continua el proceso después del 2001-2002. En esos años se produce la recuperación de la economía nacional, con un gran impulso para la región, lo cual genera el interés de poder precisar de qué se trata esta 'recuperación' y si estamos ante un movimiento orgánico o coyuntural de la economía. El período también nos permitió profundizar en el debate de las relaciones de fuerzas políticas, al hacer observable el período en que la burguesía logra recuperar la representación institucional como expresión legítima de la sociedad y consigue frenar la protesta social