Non-destructive genetic sampling in fish. An improved method for DNA extraction from fish fins and scales

DNA-based studies have been one of the major interests in conservation biology of endangered species and in population genetics. As species and population genetic assessment requires a source of biological material, the sampling strategy can be overcome by non-destructive procedures for DNA isolation. An improved method for obtaining DNA from fish fins and scales with the use of an extraction buffer containing urea and further DNA purification with phenol-chloroform is described. The methodology combines the benefits of a non-destructive DNA sampling and its high efficiency. In addition, comparisons with other methodologies for isolating DNA from fish demonstrated that the present procedure also becomes a very attractive alternative to obtain large amounts of high-quality DNA for use in different molecular analyses. The DNA samples, isolated from different fish species, have been successfully used on random amplified polymorphic DNA (RAPD) experiments, as well as on amplification of specific ribosomal and mitochondrial DNA sequences. The present DNA extraction procedure represents an alternative for population approaches and genetic studies on rare or endangered taxa.

Temporal patterns of parasitism in Diatraea saccharalis Fabr. (Lep., Crambidae) populations at different spatial scales in sugarcane fields in Brazil

Biological control of Diatraea saccharalis is regarded as one of the best examples of successful classical biological control in Brazil. Since the introduction of the exotic parasitoid, Cotesia flavipes, from Pakistan at the beginning of the 1970s, decrease in D. saccharalis infestation in sugarcane fields has been attributed to the effectiveness of this agent. Recently, the native Tachinidae fly parasitoids (Lydella minense and Paratheresia claripalpis) have also been implicated in this success. However, quantitative data confirming the actual contribution of these agents to the control of D. saccharalis are rather limited. The purpose of this study was to investigate the dynamics of the interactions between D. saccharalis and its parasitoids, emphasizing the temporal patterns of parasitism. To investigate this question, a large data set comprising information collected from two sugarcane mills located in the state of São Paulo, Brazil (Barra and Sao Joao sugarcane mills), was analysed. Basically, the data set contained monthly information about the number of D. saccharalis larvae and their parasitoids in each sample (man-hour per sample), the sugarcane varieties cultivated, the age of the sugarcane plants (only at the Sao Joao sugarcane mill) as well as the sugarcane cut at sampling time. The data were collected from March 1984 to March 1997 and from May 1982 to December 1996 for the Barra and Sao Joao sugarcane mills, respectively. Temporal inverse density-dependent parasitism was predominant for both parasitoid species with respect to all spatial scales. Although the temporal pattern of parasitism was not directly density dependent, it was evident that the tachinids and C. flavipes presented positive numerical responses according to variations in D. saccharalis densities through time.

Evaluating craniofacial asymmetry with digital cephalometric images and cone-beam computed tomography

Introduction: The aim of this study was to evaluate craniofacial asymmetry by using 2-dimensional (2D) poster-oanterior cephalometric images, 3-dimensional cone-beam computed tomography (CBCT), and physical measurements (gold standard). Methods: Ten dry human skulls were assessed, and radiopaque markers were placed on 17 skeletal landmarks. Twenty linear measurements were taken on each side to compare the right and left sides and to compare these measurements with the physical measurements made with a digital caliper. To acquire the 2D posteroanterior radiographs, an Extraoral Phosphor Storage Plate (Air Techniques, Chicago, Ill) was used as the image receptor with a Eureka x-ray-Duocon Machlett unit (Machlett Laboratores, Chicago, Ill). Three-dimensional imaging data were acquired from a CB MercuRay (Hitachi Medical, Tokyo, Japan). Results: on average, the right side was larger than the left for most of the 20 distances evaluated in the digital 2D and the CBCT images, and there was poor agreement between the digital 2D images and the physical measurements (kappa = 0.0609) and almost perfect agreement (kappa = 0.92) between the CBCT and physical measurements when individual measurements were considered. Conclusions: Human skulls, with no apparent asymmetry, had some differences between the right and left sides, with dominance for the right side but with no clinical significance. CBCT can better evaluate craniofacial morphology when compared with digital 2D images. (Am J Orthod Dentofacial Orthop 2011; 139: e523-e531)

The light-cone gauge without prescriptions

Feynman integrals in the physical light-cone gauge are more difficult to solve than their covariant counterparts. The difficulty is associated with the presence of unphysical singularities due to the inherent residual gauge freedom in the intermediate boson propagators constrained within this gauge choice. In order to circumvent these non-physical singularities, the headlong approach has always been to call for mathematical devices - prescriptions - some successful and others not. A more elegant approach is to consider the propagator from its physical point of view, that is, an object obeying basic principles such as causality. Once this fact is realized and carefully taken into account, the crutch of prescriptions can be avoided altogether. An alternative, third approach, which for practical computations could dispense with prescriptions as well as avoiding the necessity of careful stepwise consideration of causality, would be of great advantage. and this third option is realizable within the context of negative dimensions, or as it has been coined, the negative dimensional integration method (NDIM).

Light-cone gauge integrals: prescriptionlessness at two loops

The only calculations performed beyond one-loop level in the light-cone gauge make use of the Mandelstam-Leibbrandt (ML) prescription in order to circumvent the notorious gauge dependent poles. Recently we have shown that in the context of negative dimensional integration method (NDIM) such prescription can be altogether abandoned, at least in one-loop order calculations. We extend our approach, now studying two-loop integrals pertaining to two-point functions. While previous works on the subject present only divergent parts for the integrals, we show that our prescriptionless method gives the same results for them, besides finite parts for arbitrary exponents of propagators. (C) 2000 Elsevier B.V. B.V. All rights reserved.

A possible way to relate the covariantization and the negative dimensional integration method in the light-cone gauge

Here we present a possible way to relate the method of covariantizing the gauge-dependent pole and the negative dimensional integration method for computing Feynman integrals pertinent to the light-cone gauge fields. Both techniques are applicable to the algebraic light-cone gauge and dispense with prescriptions to treat the characteristic poles.

Aspects of classical and quantum motion on a flux cone

Motion of a nonrelativistic particle on a cone with a magnetic flux running through the cone axis (a flux cone) is studied. It is expressed as the motion of a particle moving on the Euclidean plane under the action of a velocity-dependent force. The probability fluid (quantum flow) associated with a particular stationary state is studied close to the singularity, demonstrating nontrivial Aharonov-Bohm effects. For example, it is shown that, near the singularity, quantum flow departs from classical flow. In the context of the hydrodynamical approach to quantum mechanics, quantum potential due to the conical singularity is determined, and the way it affects quantum flow is analyzed. It is shown that the winding number of classical orbits plays a role in the description of the quantum Bow. The connectivity of the configuration space is also discussed.

The few scales of nuclei and nuclear matter

The well-known correlations of low-energy three and four-nucleon observables with a typical three-nucleon scale (e.g., the Tjon line) is extended to light nuclei and nuclear matter. Evidence for the scaling between light nuclei binding energies and the triton one are pointed out. We argue that the saturation energy and density of nuclear matter are correlated to the triton binding energy. The available systematic nuclear matter calculations indicate a possible band structure representing these correlations. (c) 2006 Elsevier B.V. All rights reserved.

Path integrals on a flux cone

This paper considers the Schrodinger propagator on a cone with the conical singularity carrying magnetic flux (flux cone). Starting from the operator formalism, and then combining techniques of path integration in polar coordinates and in spaces with constraints, the propagator and its path integral representation are derived. The approach shows that effective Lagrangian contains a quantum correction term and that configuration space presents features of nontrivial connectivity.

PP-wave light-cone free string field theory at finite temperature

In this paper, a real-time formulation of light-cone pp-wave string field theory at finite temperature is presented. This is achieved by developing the thermo field dynamics (TFD) formalism in a second quantized string scenario. The equilibrium thermodynamic quantities for a pp-wave ideal string gas are derived directly from expectation values on the second quantized string thermal vacuum. Also, we derive the real-time thermal pp-wave closed string propagator. In the flat space limit it is shown that this propagator can be written in terms of Theta functions, exactly as the zero temperature one. At the end, we show how superstrings interactions can be introduced, making this approach suitable to study the BMN dictionary at finite temperature.

Functional Analysis for Gauge Fields on the Front-Form and the Light-Cone Gauge

Constrained systems in quantum field theories call for a careful study of diverse classes of constraints and consistency checks over their temporal evolution. Here we study the functional structure of the free electromagnetic and pure Yang-Mills fields on the front-form coordinates with the null-plane gauge condition. It is seen that in this framework, we can deal with strictu sensu physical fields.

Estudo experimental do momento de inércia de um cone

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

CAUSAL PRESCRIPTION FOR THE LIGHT-CONE GAUGE

We present a prescription for light-cone gauge singularities which embeds in it causality and show that it results in simpler and less demanding integrals to be performed.

Coexisting spatio-temporal scales in neuroscience

In this study I propose an epistemological discussion of multiple spatio-temporal scales in neuroscience. Are such scales merely convenient levels of description of structure and function, or do they correspond to irreducible levels of brain organization? What criteria should we employ in order to reduce one level to another, or to identify levels that are not reducible to others? Should we think of these criteria as based on empirical and/or theoretical reasons? Beginning with an empirical criterion - the necessity of different experimental methodologies for the measurement of different phenomena in the same system - I summarize spatial and temporal scales currently used in neuroscience and discuss the possibility of a more general theoretical criterion. I conclude that multiscaling should be recognized as a central concept in the epistemology of neuroscience.

EVALUATING ONE-LOOP LIGHT-CONE INTEGRALS BY COVARIANTIZING THE GAUGE-DEPENDENT POLE

Making sure that causality be preserved by means of ''covariantizing'' the gauge-dependent singularity in the propagator of the vector potential A(mu)(x), we show that the evaluation of some basic one-loop light-cone integrals reproduce those results obtained through the Mandelstam-Leibbrandt prescription. Moreover, such a covariantization has the advantage of leading to simpler integrals to be performed in the cone variables (the bonus), although, of course, it introduces an additional alpha-parameter integral to be performed (the price to pay).