Opening Basement Membrane Gaps During C. elegans Uterine-Vulval Attachment

The basement membrane (BM) is a highly conserved form of extracellular matrix that underlies or surrounds and supports most animal tissues. BMs are crossed by cells during various remodeling events in development, immune surveillance, or during cancer metastasis. Because BMs are dense and not easily penetrable, most of these cells must open a gap in order to facilitate their migration. The mechanisms by which cells execute these changes are poorly understood. A developmental event that requires the opening of a BM gap is C. elegans uterine-vulval connection. The anchor cell (AC), a specialized uterine cell, creates a de novo BM gap. Subsequent widening of the BM gap involves the underlying vulval precursor cells (VPCs) and the π cells, uterine neighbors of the AC through non-proteolytic BM sliding. Using forward and reverse genetic screening, transcriptome profiling, and live-cell imaging, I investigated how the cells in these tissues accomplish BM gap formation. In Chapter 2, I identify two potentially novel regulators of BM breaching, isolated through a large-scale forward genetic screen and characterize the invasion defect in these mutants. In Chapter 3, I describe single-cell transcriptome sequencing of the invasive AC. In Chapter 4, I describe the role of the π cells in opening the nascent BM gap. A complete developmental pathway for this process has been elucidated: the AC induces the π fate through Notch signaling, after which the π cells upregulate the Sec14 family protein CTG-1, which in turn restricts the trafficking of DGN-1 (dystroglycan), a laminin receptor, allowing the BM to slide. Chapter 5 outlines the implications of these discoveries.

The roles of EFN-1 and seam cell V2 in the transmission of a stop cue for the posterior lateral microtubule in Caenorhabditis elegans

A functional nervous system requires the precise arrangement of all nerve cells and their neurites. To achieve this correct assembly, a myriad of molecular guidance cues works together to direct the outgrowth of neurites to their correct positions. The small nematode C. elegans provides the ideal model system to study the complex mechanisms of neurite guidance due to its relatively simple nervous system, composed of 302 neurons. I used two mechanosensory neurons, called the posterior lateral microtubule (PLM), to investigate the role of the ephrin and Eph receptor protein family in neurite termination in C. elegans. Activation of the C. elegans Eph receptor VAB-1 on the PLM growth cone is sufficient to cause PLM termination, but the identity and location of the activating ligand has not been established. In my thesis I investigated the ability of the ephrin ligand EFN-1 to activate VAB-1 to cause PLM termination when expressed on the same cell (in cis) and on opposing cells (in trans) to the receptor. I showed that EFN-1 is able to activate VAB-1 in cis and in trans to cause PLM termination. I also assessed the hypodermal seam cells as the source of the ephrin stop cue using fluorescently labelled and seam cell mutant transgenic worms. I found that although the PLM shows consistent termination on the seam cell V2 in wild type worms independent of PLM length, this process is not significantly disrupted in seam cell mutants. With this information I have created a new hypothesis that the PLM neurite is able the provide a positional cue for the developing seam cells, and have created a new transgenic strain which can be used to assess the impact of PLM and ALM cell ablation on seam cell position. My research is the first to demonstrate the ability of an ephrin ligand to activate its ephrin receptor in cis, and further research can investigate if this finding has in vivo applications.

Molecular Mechanism of the Response to Hydrogen Sulfide in C. elegans

Thesis (Ph.D.)--University of Washington, 2016-08

Identification of Genes Modulating Mitochondrial Biogenesis in Caenorhabditis elegans

Since Altmann recognized ubiquitously distributed "bioblasts" in 1890, understanding of mitochondria has evolved from "elementary organisms" living inside cells and carrying out vital functions, over the Harman's "free radical theory" in 1956, to one of the driving forces of aging and cause of multiple associated diseases impacting society today. While a tremendous amount of work has contributed to the understanding of mitochondrial biology in different model organisms, the precise molecular mechanisms of basic mitochondrial function have yet to be deciphered. By employing an RNA interference mediated screen in Caenorhabditis elegans, we identified two transcription factors: SPTF-3, a member of Sp1 family, and an uncharacterized, nematode specific W04D2.4. We propose that both proteins modulate expression of many genes with regard to mitochondrial function including mitochondrial single-stranded binding protein encoded by mtss-1, whose promoter was used as transcriptional reporter in the screen. Further, RNA sequencing data indicate that W04D2.4 indirectly regulates expression of mitochondrial DNA via control of genes functionally related to mitochondrial replication and translation machineries. We also demonstrate that from all interventions targeting cytosolic translation, MTSS-1 levels are elevated only upon knockdown of genes encoding cytosolic ribosomal proteins. Reduction of ribosomes leads to increased sptf-3 translation, most likely in an internal ribosome entry side (IRES) mediated manner, eventually inducing mtss-1 expression. Moreover, we identify a novel role for SPTF-3 in the regulation of mitochondrial unfolded stress response (UPRmt) activation, but not endoplasmatic reticulum or oxidative stress responses. Taken together, this study identifies two transcription factors previously not associated with mitochondrial biogenesis and UPRmt in C. elegans, establishing a basis for further investigation of mito-nuclear interactions.

Genetic Suppressors of mrp-5 Lethality in C. elegans

Heme is an essential cofactor in numerous proteins, but is also cytotoxic. Thus, directed pathways must exist for regulating heme homeostasis. C. elegans is a powerful genetic animal model for elucidating these pathways because it is a heme auxotroph. Worms acquire dietary heme though HRG-1-related importers, and intestinal export was demonstrated to be mediated by the ABC transporter MRP-5. Loss of mrp-5 results in embryonic lethality. Although heme transporters have been identified, there are significant gaps in our understanding for the heme trafficking beyond HRG-1 and MRP-5. To identify additional components, we conducted a forward genetic screen utilizing the null allele mrp-5(ok2067). Screening of 160,000 haploid genomes yielded thirty-two mrp-5(ok2067) suppressor mutants. Deep-sequencing variant analysis revealed three of the suppressors subunits of adapter protein complex 3 (AP-3). We now seek to identify mechanisms for how adaptor protein deficiencies bypass a defect in MRP-5-mediated heme export.

Composição química e atividade antioxidante de maracujá-roxo (Passiflora edulis Sims edulis)em diferentes graus de maturação

O maracujá-roxo é um fruto tropical que tem ganho destaque devido ao seu valor nutricional, organolético e às emergentes descobertas acerca das suas propriedades farmacêuticas e antioxidantes. Durante o processo de maturação decorrem várias reações de ordem física e química, e no intuito de enriquecer o conhecimento acerca de como a composição química e as propriedades do maracujá-roxo evoluem ao longo da maturação, este trabalho consistiu na caracterização física do fruto inteiro e na caracterização química geral das sementes, casca e polpa em frutos separados em cinco graus de maturação diferentes (G1 a G5). Foi também avaliada a atividade antioxidante (atividade antiradicalar e poder redutor), e o teor em compostos fenólicos (fenóis totais, derivados do ácido hidroxicinâmico e flavonóis) das diferentes matrizes que compõem o fruto ao longo da maturação. A partir dos resultados obtidos verificou-se na casca que o teor em cinza bruta aumenta essencialmente entre G1 e G2 enquanto se verificou uma diminuição da proteína. Em relação à semente, o teor em cinza bruta aumenta gradualmente, e o teor em proteína aumenta de G1 para G2, estabilizando posteriormente nos 8% (base seca). O teor em gordura aumenta gradualmente ao longo da maturação, verificando-se um maior acumulo entre G1 e G2 (9,9 e 19,1% respetivamente). No que respeita à polpa, há uma diminuição nos teores de cinza e proteína e aumento dos sólidos solúveis totais.Verificou-se um aumento ligeiro do pH ao longo da maturação (entre 2,8 a 3,1) e uma diminuição da acidez (entre 12,1 e 6,7 g de ácido cítrico 100 mL-1). Constatou-se que os açúcares predominantes na polpa foram a sacarose, frutose e glucose. Quanto aos ácidos orgánicos, o ácido cítrico foi o maioritário em todos os graus de maturação e teores mais baixos foram quantificados para os ácidos málico e ascórbico. Entre as diferentes partes do fruto estudadas, as cascas foram a matriz mais antioxidante, aumentando o seu potencial bioativo durante a maturação. As sementes apresentaram valores mais elevados de fenóis totais, derivados do ácido hidroxicinâmico e flavonóis. Foi verificado que a atividade antioxidante esteve correlacionada com os valores de fenóis totais presentes nas diferentes partes do fruto ao longo da maturação. De acordo com o conhecimento dos autores, este é o primeiro estudo que toma em consideração as alterações sofridas pelas diferentes partes do maracujá-roxo produzido em Portugal, ao longo da maturação.

Estudio de la patogenicidad de Candida y de la actividad de los fármacos antifúngicos en un modelo animal en Caenorhabditis elegans

171 p.

Cyanogenic compounds from mesocarp and epicarp flours of passion fruit (passiflora edulis flavicarpa).

2016

Produção de mudas do maracujazeiro silvestre: Passiflora cincinnata Mast. BRS Sertão Forte (BRS SF).

Cultivar de maracujazeiro silvestre BRS Sertão Forte foi obtida por pesquisas desenvolvidas na Embrapa Semiárido (Petrolina, PE) em parceria com a Embrapa Cerrados (Planaltina, DF), resultante de um processo de seleção massal de uma população de acessos silvestres da espécie Passiflora cincinnata Mast. de diferentes origens, visando, principalmente, ao aumento da produtividade e do tamanho do fruto.

Cultivar de maracujazeiro silvestre (Passiflora cincinnata Mast.) para a Caatinga e para o Cerrado BRS SF.

A cultivar de maracujazeiro silvestre BRS Sertão Forte (BRS SF) foi obtida por pesquisas desenvolvidas na Embrapa Semiárido (Petrolina, PE) em parceria com a Embrapa Cerrados (Planaltina, DF), resultante de um processo de seleção massal de uma população de acessos silvestres da espécie Passiflora cincinnata Mast. provenientes de diferentes origens, visando, principalmente, ao aumento da produtividade e do tamanho do fruto.

Caracterização agronômica e fisíco-química de progênies de maracujazeiro azedo (Passiflora edulis Sims) no Distrito Federal

Dissertação (mestrado)—Universidade de Brasília, Faculdade de Agronomia e Medicina Veterinária, Programa de Pós-Graduação em Agronomia, 2016.