Next-generation sequencing reveals large connected networks of intra-host HCV variants

Background: Next-generation sequencing (NGS) allows for sampling numerous viral variants from infected patients. This provides a novel opportunity to represent and study the mutational landscape of Hepatitis C Virus (HCV) within a single host.Results: Intra-host variants of the HCV E1/E2 region were extensively sampled from 58 chronically infected patients. After NGS error correction, the average number of reads and variants obtained from each sample were 3202 and 464, respectively. The distance between each pair of variants was calculated and networks were created for each patient, where each node is a variant and two nodes are connected by a link if the nucleotide distance between them is 1. The work focused on large components having > 5% of all reads, which in average account for 93.7% of all reads found in a patient. The distance between any two variants calculated over the component correlated strongly with nucleotide distances (r = 0.9499; p = 0.0001), a better correlation than the one obtained with Neighbour-Joining trees (r = 0.7624; p = 0.0001). In each patient, components were well separated, with the average distance between (6.53%) being 10 times greater than within each component (0.68%). The ratio of nonsynonymous to synonymous changes was calculated and some patients (6.9%) showed a mixture of networks under strong negative and positive selection. All components were robust to in silico stochastic sampling; even after randomly removing 85% of all reads, the largest connected component in the new subsample still involved 82.4% of remaining nodes. In vitro sampling showed that 93.02% of components present in the original sample were also found in experimental replicas, with 81.6% of reads found in both. When syringe-sharing transmission events were simulated, 91.2% of all simulated transmission events seeded all components present in the source.Conclusions: Most intra-host variants are organized into distinct single-mutation components that are: well separated from each other, represent genetic distances between viral variants, robust to sampling, reproducible and likely seeded during transmission events. Facilitated by NGS, large components offer a novel evolutionary framework for genetic analysis of intra-host viral populations and understanding transmission, immune escape and drug resistance.

A NS-2 simulation model for DNP3 protocol over IEEE 802.15.4 wireless protocol toward low cost simulation of Smart Grid applications

Faced with an imminent restructuring of the electric power system, over the past few years many countries have invested in a new paradigm known as Smart Grid. This paradigm targets optimization and automation of electric power network, using advanced information and communication technologies. Among the main communication protocols for Smart Grids we have the DNP3 protocol, which provides secure data transmission with moderate rates. The IEEE 802.15.4 is another communication protocol also widely used in Smart Grid, especially in the so-called Home Area Network (HAN). Thus, many applications of Smart Grid depends on the interaction of these two protocols. This paper proposes modeling, in the traditional network simulator NS-2, the integration of DNP3 protocol and the IEEE 802.15.4 wireless standard for low cost simulations of Smart Grid applications.

Sistema fotovoltaico interligado á rede eletrica no Campus da UNESP-FEG Guaratinguetá

Solar energy can be considered the largest source of energy available on earth and has attracted in recent decades, attention and interest for its rational use. The use of energy sources in a sustainable manner is essential to the survival of future generations, due to the scarcity of natural resources and their exploitation in a disorderly way. Studies related to the applications of renewable sources becomes then relevant, given its great importance as regards the conscious use of resources provided by nature, with the least possible impact on it. The present study presents an evaluation of generation potential and feasibility of implementing a solar photovoltaic connected to the grid and connected to the roofs of some buildings of the Faculty of Engineering of Guaratinguetá - FEG, to supply the demand of electric energy consumption on campus and attempting to inject a possible surplus power generation in local power grid, increasing network capacity and reducing peak loads

Smart Grid e Carros Elétricos - Influência da Carga de Carros Elétricos Sobre o Sistema Elétrico

The technologies are advancing at a pace so expressive that allow the increase of the power quality from generation until the distribution to end customers. This improvement has been made possible through the automation of the energy that follows to a better quality of the energy provided, a lower energy supply disruptions and a very short recovery time. The trend of today and the near future is the distributed energy generation. To keep the automated control of the chain, the presence of Smart Grids is needed and that will be the most efficient and economical way to manage the entire system. Within this theme, is going to be necessary analyze the electric cars that promise to promote a more sustainable transport because it doesn’t uses fossil fuels, and more healthy because it does not emit pollutants into the atmosphere. The popularization of this type of vehicle is estimated to happen in a few decades and the case study analyzing its influence on the demand of the electrical system is something that will be very important in the near future. This paper presents a study of the influence of the inclusion of charges refering to electric cars

Biblioteca de escalonamento de tarefas em grid computacional - LIBTS

The use of computational grid simulators is particularly important for studying the algorithms of task scheduling. Through the simulators it’s possible to assess and compare the performance of different algorithms in various scenarios. Despite the simulation tools provide basic features for simulation in distributed environments, they don’t offer internal policies of task scheduling, so that the implementation of the algorithms must be realized by the user himself. Therefore, this study aims to present the library of task scheduling LIBTS (LIBrary Tasks Scheduling) which is developed and adapted to the SimGrid simulator to provide the users with a tool to analyze the algorithms of task scheduling in the computational grid.

Desenvolvimento de um sistema de gerenciamento de energia (EMS - Energy Management System) para a rede elétrica inteligente (Smart Grid)

Pós-graduação em Engenharia Elétrica - FEIS

Análise do impacto de sistemas fotovoltaicos conectados à rede de distribuição na qualidade da energia de uma smart city: Análise do impacto de sistemas fotovoltaicos conectados à rede de distribuição na qualidade da energia de uma smart city

Pós-graduação em Engenharia Elétrica - FEIS

Modelo de simulação NS-2 para o protocolo DNP3 sobre o protocolo de rede sem fio IEEE 802.15.4 para simulação de baixo custo de aplicação smart grid

Pós-graduação em Engenharia Elétrica - FEIS

Multi-task control strategy for grid-tied inverters based on conservative power theory

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Análise de desempenho de redes de comunicação wireless em aplicações de Smart Grid

Pós-graduação em Engenharia Elétrica - FEIS

Multifunctional current reference generation strategy for grid-tied power electronic converter

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Proposta de equipamento de conexão à rede para a utilização da geração de energia solar em consumidores de pequeno e médio porte

Pós-graduação em Engenharia Mecânica - FEG

Limnology of a lateral lagoon system connected to a Neotropical reservoir (Rosana reservoir, São Paulo/Paraná, Brazil)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Utilização de painéis solares fotovoltaicos no segmento residencial

In order to diversify the global and national energy matrix and reduce harmful impacts on the environment caused by the emission of polluting gases into the atmosphere, the use of clean and renewable energy sources is presented as a good alternative. This work discusses the use of photovoltaic solar energy, a source that presents such characteristics. The photovoltaic system under study is the type distributed connected to the grid, in the residential segment. It is informed of its use in the global and national levels. They are also present their characteristics, electrical and electronic circuits that make up the equipment required for its operation and the design of a system to be installed in a residence

Geração distribuída de energia elétrica e panorama fotovoltaico brasileiro e português

This work presents a study on the design of a photovoltaic system connected to the grid.It discussed the main characteristics of the solar cell which is the basic component for the manufacture of solar modulethe main components of the photovoltaic system and the steps of the photovoltaic and electrical design of the system, ranging from the choice of the photovoltaic module to the dimensioning of the components of the electrical installation.In addition to the technical design, this work contains a complete comparative analysis of the current situation of photovoltaic generation distributed in Brazil and Portugal, through incentive programs to energy use as well as current legislation in both countries