Assessment of crop insect damage using unmanned aerial systems: A machine learning approach

Agricultural pests are responsible for millions of dollars in crop losses and management costs every year. In order to implement optimal site-specific treatments and reduce control costs, new methods to accurately monitor and assess pest damage need to be investigated. In this paper we explore the combination of unmanned aerial vehicles (UAV), remote sensing and machine learning techniques as a promising technology to address this challenge. The deployment of UAVs as a sensor platform is a rapidly growing field of study for biosecurity and precision agriculture applications. In this experiment, a data collection campaign is performed over a sorghum crop severely damaged by white grubs (Coleoptera: Scarabaeidae). The larvae of these scarab beetles feed on the roots of plants, which in turn impairs root exploration of the soil profile. In the field, crop health status could be classified according to three levels: bare soil where plants were decimated, transition zones of reduced plant density and healthy canopy areas. In this study, we describe the UAV platform deployed to collect high-resolution RGB imagery as well as the image processing pipeline implemented to create an orthoimage. An unsupervised machine learning approach is formulated in order to create a meaningful partition of the image into each of the crop levels. The aim of the approach is to simplify the image analysis step by minimizing user input requirements and avoiding the manual data labeling necessary in supervised learning approaches. The implemented algorithm is based on the K-means clustering algorithm. In order to control high-frequency components present in the feature space, a neighbourhood-oriented parameter is introduced by applying Gaussian convolution kernels prior to K-means. The outcome of this approach is a soft K-means algorithm similar to the EM algorithm for Gaussian mixture models. The results show the algorithm delivers decision boundaries that consistently classify the field into three clusters, one for each crop health level. The methodology presented in this paper represents a venue for further research towards automated crop damage assessments and biosecurity surveillance.

Jätevesien puhdistuksen kustannuksista

English summary: Costs of purifying domestic sewage.

Characterization and Acceptor Preference of a Soluble Meningococcal Group C Polysialyltransferase

Vaccines against Neisseria meningitidis group C are based on its alpha-2,9-linked polysialic acid capsular polysaccharide. This polysialic acid expressed on the surface of N. meningitidis and in the absence of specific antibody serves to evade host defense mechanisms. The polysialyltransferase (PST) that forms the group C polysialic acid (NmC PST) is located in the cytoplasmic membrane. Until recently, detailed characterization of bacterial polysialyltransferases has been hampered by a lack of availability of soluble enzyme preparations. We have constructed chimeras of the group C polysialyltransferase that catalyzes the formation alpha-2,9-polysialic acid as a soluble enzyme. We used site-directed mutagenesis to determine the region of the enzyme necessary for synthesis of the alpha-2,9 linkage. A chimera of NmB and NmC PSTs containing only amino acids 1 to 107 of the NmB polysialyltransferase catalyzed the synthesis of alpha-2,8-polysialic acid. The NmC polysialyltransferase requires an exogenous acceptor for catalytic activity. While it requires a minimum of a disialylated oligosaccharide to catalyze transfer, it can form high-molecular-weight alpha-2,9-polysialic acid in a nonprocessive fashion when initiated with an alpha-2,8-polysialic acid acceptor. De novo synthesis in vivo requires an endogenous acceptor. We attempted to reconstitute de novo activity of the soluble group C polysialyltransferase with membrane components. We found that an acapsular mutant with a defect in the polysialyltransferase produces outer membrane vesicles containing an acceptor for the alpha-2,9-polysialyltransferase. This acceptor is an amphipathic molecule and can be elongated to produce polysialic acid that is reactive with group C-specific antibody.

Zirconia nanotubes

Hollow nanotubes of zirconia as well as of yttria-stabilized zirconia are successfully prepared by first coating the carbon nanotubes appropriately with the oxidic material and then burning off the carbon of the template.

Preliminary X-ray crystallographic studies on acetate kinase (AckA) from Salmonella typhimurium in two crystal forms

Acetate kinase (AckA) catalyzes the reversible transfer of a phosphate group from acetyl phosphate to ADP, generating acetate and ATP, and plays a central role in carbon metabolism. In the present work, the gene corresponding to AckA from Salmonella typhimurium (StAckA) was cloned in the IPTG-inducible pRSET C vector, resulting in the attachment of a hexahistidine tag to the N-terminus of the expressed enzyme. The recombinant protein was overexpressed, purified and crystallized in two different crystal forms using the microbatch-under-oil method. Form I crystals diffracted to 2.70 angstrom resolution when examined using X-rays from a rotating-anode X-ray generator and belonged to the monoclinic space group C2, with unit-cell parameters a = 283.16, b = 62.17, c = 91.69 angstrom, beta = 93.57 degrees. Form II crystals, which diffracted to a higher resolution of 2.35 angstrom on the rotating-anode X-ray generator and to 1.90 angstrom on beamline BM14 of the ESRF, Grenoble, also belonged to space group C2 but with smaller unit-cell parameters (a = 151.01, b = 78.50, c = 97.48 angstrom, beta = 116.37 degrees). Calculation of Matthews coefficients for the two crystal forms suggested the presence of four and two protomers of StAckA in the asymmetric units of forms I and II, respectively. Initial phases for the form I diffraction data were obtained by molecular replacement using the coordinates of Thermotoga maritima AckA (TmAckA) as the search model. The form II structure was phased using a monomer of form I as the phasing model. Inspection of the initial electron-density maps suggests dramatic conformational differences between residues 230 and 300 of the two crystal forms and warrants further investigation.

Unusual dependence of raman mode frequency on excitation wavelength in graphite and single walled carbon nanotubes

In this paper we report resonance Raman scattering from graphite covering excitation energies in the range 2.4 eV to 6 eV. The Raman excitation profile shows a maximum at 4.94 eV (lambda = 251nm) for the G - band (1582 cm(-1)). The D-band at similar to 1350 cm(-1), attributed to disorder activated Raman scattering, does not show up in Raman spectra recorded with excitation wavelengths smaller than 257.3 nm, revealing that the resonance enhancements of the G and D-modes are widely different. Earlier Raman measurements in carbon materials have also revealed a very large and unusual dependence of the D - mode frequency on excitation laser wavelength. This phenomenon is also observed in carbon nanotubes. In this paper we show for the first time that the above unusual dependence arises from the disorder - induced double resonance mechanism.

Structural and kinetic studies on adenylosuccinate lyase from Mycobacterium smegmatis and Mycobacterium tuberculosis provide new insights on the catalytic residues of the enzyme

Adenylosuccinate lyase (ASL), an enzyme involved in purine biosynthesis, has been recognized as a drug target against microbial infections. In the present study, ASL from Mycobacteriumsmegmatis (MsASL) and Mycobacteriumtuberculosis (MtbASL) were cloned, purified and crystallized. The X-ray crystal structure of MsASL was determined at a resolution of 2.16 angstrom. It is the first report of an apo-ASL structure with a partially ordered active site C3 loop. Diffracting crystals of MtbASL could not be obtained and a model for its structure was derived using MsASL as a template. These structures suggest that His149 and either Lys285 or Ser279 of MsASL are the residues most likely to function as the catalytic acid and base, respectively. Most of the active site residues were found to be conserved, with the exception of Ser148 and Gly319 of MsASL. Ser148 is structurally equivalent to a threonine in most other ASLs. Gly319 is replaced by an arginine residue in most ASLs. The two enzymes were catalytically much less active compared to ASLs from other organisms. Arg319Gly substitution and reduced flexibility of the C3 loop might account for the low catalytic activity of mycobacterial ASLs. The low activity is consistent with the slow growth rate of Mycobacteria and their high GC containing genomes, as well as their dependence on other salvage pathways for the supply of purine nucleotides. Structured digital abstract andby()

An assessment of terrestrial water storage, rainfall and river discharge over Northern India from satellite data

Terrestrial water storage (TWS) plays a key role in the global water cycle and is highly influenced by climate variability and human activities. In this study, monthly TWS, rainfall and Ganga-Brahmaputra river discharge (GBRD) are analysed over India for the period of 2003-12 using remote sensing satellite data. The spatial pattern of mean TWS shows a decrease over a large and populous region of Northern India comprising the foothills of the Himalayas, the Indo-Gangetic Plains and North East India. Over this region, the mean monthly TWS exhibits a pronounced seasonal cycle and a large interannual variability, highly correlated with rainfall and GBRD variations (r > 0.8) with a lag time of 2 months and 1 month respectively. The time series of monthly TWS shows a consistent and statistically significant decrease of about 1 cm year(-1) over Northern India, which is not associated with changes in rainfall and GBRD. This recent change in TWS suggests a possible impact of rapid industrialization, urbanization and increase in population on land water resources. Our analysis highlights the potential of the Earth-observation satellite data for hydrological applications.

尾缘吹气式火焰稳定器时均流场

为了对尾缘吹气式火焰稳定器的流场进行研究，在低速风洞中利用二维在线式互相关PIV系统，对新型稳定器及V型稳定器的近尾迹流动进行了测量，考察了可控横向射流气动参数及射流方向对新型稳定器流场的影响。结果表明，尾缘吹气式火焰稳定器与V型火焰稳定器的流场特性基本相似，但吹气射流扩大了回流区，增加了回流率和湍流脉动速度；同时发现，射流与来流动量比是影响新型稳定器后流场的主要气动参数。

Electrical and optical spectroscopy for quantitative screening of hepatic steatosis in donor livers.

Macro-steatosis in deceased donor livers is increasingly prevalent and is associated with poor or non-function of the liver upon reperfusion. Current assessment of the extent of steatosis depends upon the macroscopic assessment of the liver by the surgeon and histological examination, if available. In this paper we demonstrate electrical and optical spectroscopy techniques which quantitatively characterize fatty infiltration in liver tissue. Optical spectroscopy showed a correlation coefficient of 0.85 in humans when referenced to clinical hematoxylin and eosin (H&E) sections in 20 human samples. With further development, an optical probe may provide a comprehensive measure of steatosis across the liver at the time of procurement.

高水分煤在流化床中燃烧时NOx的排放特性

通过数值计算，研究了高水分煤在流化床中燃烧时ＮＯ的排放特性及其形成的主要影响因素。结果表明煤中的水分，床内的ＣＯ浓度和空－燃比等都对于ＮＯ转换率有较大影响。

Comportamiento de doce procedencias de Gliricidia sepium (Jacq), bajo el sistema de cultivos en callejones en condiciones de "El Recreo", bosque tropical húmedo

El objetivo del estudio consistió en comprobar si existe variación entre procedencias de Gliricidia sepium (Jacq), tanto en crecimiento como en rendimiento, en cultivo callejones, bajo las condiciones agroclimáticas de " El Recreo ". Las evaluaciones al respecto se efectuaron en 12 procedencias de Gliricida Sepium (Jacq) recolectadas por el Oxford Forestry Institute en su área de distribución natural, establecidas posteriormente en la Estación Experimental "El Recreo" , dichas evaluaciones se Iniciaron en Julio de 1988 y concluyeron en Abril de 1990. Se utilizó el diseño estadístico de bloques completos al azar (BCA) con 6 repeticiones, estableciéndose 12 plantas en parcelas lineales de 8 m. de longitud con separación entre plantas de 0.5 m. Y 4.0 entre calle. Se evaluó el porcentaje de sobrevivencia, el crecimiento (altura, diámetro y número de ejes), el rendimiento (biomasa y materia seca), longitud del rebrote mayor y la capacidad de rebrotes. La densidad poblacional para Gliricidia Sepium, fue de 5,000 plantas/Ha. Entre los callejones de Gliricida se estableció el cultivo agrícola maíz, para simular condiciones reales, el crecimiento y rendimientos del maíz no se evaluó.

La participación de la mujer y los niños en el manejo integrado de plagas en las regiones I y II de Nicaragua

El presente trabajo es el resultado de un diagnostico realizado en las regiones I y II de Nicaragua. El objetivo del estudio fue conocer el rol que juegan las mujeres y los niños en las prácticas de control de plagas y en particular en el manejo de los plaguicidas. Para obtener la información del estudio se realizó una encuesta dirigida a mujeres y niños en 18 comunidades de los departamentos de Estelí, Nueva Segovia, León y Chinandega. En el estudio resultó que la participación de la mujer y los menores es alta, los resultados muestran que el 96% de la mujer y el 85% de los niños tienen participación en todas las fases agrícolas. Las prácticas de manejo integrado de plagas implementadas por las productoras son mayoritariamente recuentos de plagas, rotación de cultivos, cultivos en asocio y variedades mejoradas. Generalmente la aplicación de plaguicidas, lavado de la ropa contaminada, preparación de la mezcla y acarreo del plaguicida al lugar de aplicación. En el manejo y exposición al riesgo de los plaguicidas el 65% de las productoras en la región II contestó que conocían de personas intoxicadas, además identificaron la intoxicación laboral como la más común. En la región I, 42% de las productoras mencionó conocer de personas intoxicadas. Cuatro de los plaguicidas reportados en existencia por las agricultoras son altamente a extremadamente peligrosos, estos plaguicidas son almacenados principalmente dentro de la casa, 15% de las productoras utilizan los envases de plaguicidas para almacenar agua y alimento y el 8% para echar más veneno. Además el 88% de las productoras mencionaron conocer de los efectos adversos de la utilización de los plaguicidas, sobre todo en la salud humana. Finalmente la encuesta indica que las capacitaciones en MIP son dirigidas en su gran mayoría a los hombres y cuando incluyen a las mujeres los lugares y hora escogida para las capacitaciones eran uno los factores que obstaculizaba su participación. La falta de títulos de propiedad, que limita el acceso al crédito para la siembra, fue otro factor limitante para participar en actividades MIP. Las instituciones y los programas radiales educativos, así como la comunicación directa, juegan un papel importante en la transmisión de conocimientos MIP