The structural origin and biological function of pH-sensitivity in firefly luciferases

Firefly luciferases are called pH-sensitive because their bioluminescence spectra display a typical red-shift at acidic pH, higher temperatures, and in the presence of heavy metal cations, whereas other beetle luciferases (click beetles and railroadworms) do not, and for this reason they are called pH-insensitive. Despite many studies on firefly luciferases, the origin of pH-sensitivity is far from being understood. This subject is revised in view of recent results. Some substitutions of amino-acid residues influencing pH-sensitivity in firefly luciferases have been identified. Sequence comparison, site-directed mutagenesis and modeling studies have shown a set of residues differing between pH-sensitive and pH-insensitive luciferases which affect bioluminescence colors. Some substitutions dramatically affecting bioluminescence colors in both groups of luciferases are clustered in the loop between residues 223-235 (Photinus pyralis sequence). A network of hydrogen bonds and salt bridges involving the residues N229-S284-E311-R337 was found to be important for affecting bioluminescence colors. It is suggested that these structural elements may affect the benzothiazolyl side of the luciferin-binding site affecting bioluminescence colors. Experimental evidence suggest that the residual red light emission in pH-sensitive luciferases could be a vestige that may have biological importance in some firefly species. Furthermore, the potential utility of pH-sensitivity for intracellular biosensing applications is considered. © The Royal Society of Chemistry and Owner Societies.

The application of distributed virtual machines for enterprise computer management: A two-tier network file system for image provisioning and management

In order to simplify computer management, several system administrators are adopting advanced techniques to manage software configuration of enterprise computer networks, but the tight coupling between hardware and software makes every PC an individual managed entity, lowering the scalability and increasing the costs to manage hundreds or thousands of PCs. Virtualization is an established technology, however its use is been more focused on server consolidation and virtual desktop infrastructure, not for managing distributed computers over a network. This paper discusses the feasibility of the Distributed Virtual Machine Environment, a new approach for enterprise computer management that combines virtualization and distributed system architecture as the basis of the management architecture. © 2008 IEEE.

Brazilian network for the surveillance of maternal potentially life threatening morbidity and maternal near-miss and a multidimensional evaluation of their long term consequences

Background. It has been suggested that the study of women who survive life-threatening complications related to pregnancy (maternal near-miss cases) may represent a practical alternative to surveillance of maternal morbidity/mortality since the number of cases is higher and the woman herself is able to provide information on the difficulties she faced and the long-term repercussions of the event. These repercussions, which may include sexual dysfunction, postpartum depression and posttraumatic stress disorder, may persist for prolonged periods of time, affecting women's quality of life and resulting in adverse effects to them and their babies. Objective. The aims of the present study are to create a nationwide network of scientific cooperation to carry out surveillance and estimate the frequency of maternal near-miss cases, to perform a multicenter investigation into the quality of care for women with severe complications of pregnancy, and to carry out a multidimensional evaluation of these women up to six months. Methods/Design. This project has two components: a multicenter, cross-sectional study to be implemented in 27 referral obstetric units in different geographical regions of Brazil, and a concurrent cohort study of multidimensional analysis. Over 12 months, investigators will perform prospective surveillance to identify all maternal complications. The population of the cross-sectional component will consist of all women surviving potentially life-threatening conditions (severe maternal complications) or life-threatening conditions (the maternal near miss criteria) and maternal deaths according to the new WHO definition and criteria. Data analysis will be performed in case subgroups according to the moment of occurrence and determining cause. Frequencies of near-miss and other severe maternal morbidity and the association between organ dysfunction and maternal death will be estimated. A proportion of cases identified in the cross-sectional study will comprise the cohort of women for the multidimensional analysis. Various aspects of the lives of women surviving severe maternal complications will be evaluated 3 and 6 months after the event and compared to a group of women who suffered no severe complications in pregnancy. Previously validated questionnaires will be used in the interviews to assess reproductive function, posttraumatic stress, functional capacity, quality of life, sexual function, postpartum depression and infant development. © 2009 Cecatti et al.

Network for Cooperation in Integrated Water Resource Management for Sustainable Development in Latin America and the Caribbean No. 2

The second issue of the Circular marks the first milestone in the life of the Network, because it fulfils our intent to publish it on a regular basis at least twice a year. The emphasis in this issue is on planning at the level of the river basin.

FOG: função de objetivo genérico para roteamento e alocação de comprimentos de onda em redes ópticas com tráfego de demanda estática

Esta tese de doutorado propõe uma formulação matemática para simulação de roteamento e alocação de comprimentos de onda em redes ópticas, sem a inclusão de restrições que não são inerentes ao problema básico e com o objetivo de ser aplicável a qualquer tipo de rede óptica com tráfego de demanda estática. O estabelecimento de uma rota seguida da seleção de um comprimento de onda é um dos pontos chave para o bom funcionamento de uma rede óptica, pois influencia na forma como os recursos da rede serão gerenciados. Assim, o processo de roteamento e alocação de comprimentos de onda em redes ópticas, conhecido como RWA (Routing and Wavelength Assignment), necessita de soluções que busquem a sua otimização. Entretanto, a despeito dos inúmeros estudos com o objetivo de otimizar o processo RWA, observa-se que não há, a priori, nenhuma solução que possa levar a uma padronização do referido processo. Considerando que a padronização é desejável na consolidação do uso de qualquer tecnologia, a Tese descrita neste trabalho é uma Função de Objetivo Genérico (FOG) que trata do processo de roteamento e alocação de comprimentos de onda, visando estabelecer uma base a partir da qual seja possível desenvolver um padrão ou vários padrões para redes ópticas. A FOG foi testada, via simulação, no processo de alocação de comprimentos de onda do inglês, Wavelength Assignment e no processo RWA como um todo. Em ambos os casos, os testes foram realizados considerando redes opacas, trazendo resultados surpreendentes, considerando a simplicidade da solução para um problema não trivial.

Gerenciamento de mobilidade transparente com suporte integrado a QoS/QoE em redes heterogêneas

Os avanços nas tecnologias de comunicação sem fio, a demanda por novas aplicações multimídia em tempo real, com requisitos de Qualidade de Serviço (QoS) e Qualidade de Experiência (QoE), e a proliferação de equipamentos móveis, originam o surgimento de soluções que permitem mobilidades horizontais e verticais em redes heterogêneas, de modo transparente. Esses dispositivos móveis apresentam múltiplas interfaces sem fio, onde os usuários se conectam para realizar tarefas e serviços variados no seu dia a dia, mediante a tecnologia de redes diferentes, proporcionando um cenário heterogêneo com diversas oportunidades de conectividade para os usuários móveis. Visando solucionar o problema de várias conexões, feitas por usuários móveis, em uma mesma rede Wi-Fi (Wireless Fidelity) e/ou WiMAX (Worldwide Interoperability for Microwave Access) com diferentes serviços executados, porém, utilizando incorretamente a rede, esta dissertação propõe uma técnica hierárquica de decisão de mobilidade transparente, baseada em uma função de custo, no padrão IEEE 802.21 e no mapeamento de classes de serviço para garantir QoS/QoE para usuários em períodos de mobilidade chamada de MIH2Q, onde essa política informa a melhor rede para ser utilizada, de acordo com o serviço utilizado pelo usuário móvel. A avaliação do impacto e os benefícios da proposta são feitas através de simulação no NS-2 (Network Simulator - version 2) e no evalvid, utilizando métricas de QoS e QoE para verificação dos resultados.

Inferring a weighted elastic network from partial unfolding with coarse-grained simulations

A number of studies have demonstrated that simple elastic network models can reproduce experimental B-factors, providing insights into the structure-function properties of proteins. Here, we report a study on how to improve an elastic network model and explore its performance by predicting the experimental B-factors. Elastic network models are built on the experimental C coordinates, and they only take the pairs of C atoms within a given cutoff distance r(c) into account. These models describe the interactions by elastic springs with the same force constant. We have developed a method based on numerical simulations with a simple coarse-grained force field, to attribute weights to these spring constants. This method considers the time that two C atoms remain connected in the network during partial unfolding, establishing a means of measuring the strength of each link. We examined two different coarse-grained force fields and explored the computation of these weights by unfolding the native structures. Proteins 2014; 82:119-129. (c) 2013 Wiley Periodicals, Inc.

Understanding the Function of Conserved Variations in the Catalytic Loops of Fungal Glycoside Hydrolase Family 12

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Determinants of bird species richness, endemism, and island network roles in Wallacea and the West Indies: is geography sufficient or does current and historical climate matter?

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Sincronia das bolsas de valores

This study aims to analyze various index stock exchanges around the world, with mathematical methods, analyzing the Product Distribution function (PDF), cumulative distribution and correlation. It is thought that the world economy is connected, as if the financial markets were a network, where the fluctuation of a market generates a variation on another and another, creating a pattern, that this change will affect the entire network, thus creating what we might call the domino effect. From this we intend to study, using as a basis the main index of the major stock exchanges around the world the relationship they have with each other, analyzing the influence and correlation that generates this effect, showing that markets are connected and influence each other. We can see this effect in the crisis of 2008, where the U.S. market from one moment to the other was shaken, affecting the whole world in a few days, creating effects that are felt in the present day

Optimizing urban traffic flow using genetic algorithm with petri net analysis as fitness function

This paper describes a new methodology adopted for urban traffic stream optimization. By using Petri net analysis as fitness function of a Genetic Algorithm, an entire urban road network is controlled in real time. With the advent of new technologies that have been published, particularly focusing on communications among vehicles and roads infrastructures, we consider that vehicles can provide their positions and their destinations to a central server so that it is able to calculate the best route for one of them. Our tests concentrate on comparisons between the proposed approach and other algorithms that are currently used for the same purpose, being possible to conclude that our algorithm optimizes traffic in a relevant manner.

Métrica para definição de pontos estáveis utilizando-se da Análise de Robustez no posicionamento por ponto preciso

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Effects of uremic solutes on reactive oxygen species in vitro model systems as a possibility of support the renal function management

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Comparative study between powers of sigmoid functions, MLP-backpropagation and polynomials in function approximation problems

Function approximation is a very important task in environments where the computation has to be based on extracting information from data samples in real world processes. So, the development of new mathematical model is a very important activity to guarantee the evolution of the function approximation area. In this sense, we will present the Polynomials Powers of Sigmoid (PPS) as a linear neural network. In this paper, we will introduce one series of practical results for the Polynomials Powers of Sigmoid, where we will show some advantages of the use of the powers of sigmiod functions in relationship the traditional MLP-Backpropagation and Polynomials in functions approximation problems.

Fatores de risco nutricionais associados à mortalidade em pacientes com lesão renal aguda de acordo com os critérios do Acute Kidney Injury Network (AKIN)

Pós-graduação em Fisiopatologia em Clínica Médica - FMB