Electron beam induced electronic transport in alkyl amine-intercalated VOx nanotubes

The electron beam induced electronic transport in primary alkyl amine-intercalated V2O5 nanotubes is investigated where the organic amine molecules are employed as molecular conductive wires to an aminosilanized substrate surface and contacted to Au interdigitated electrode contacts. The results demonstrate that the high conductivity of the nanotubes is related to the non-resonant tunnelling through the amine molecules and a reduced polaron hopping conduction through the vanadium oxide itself. Both nanotube networks and individual nanotubes exhibit similarly high conductivities where the minority carrier transport is bias dependent and nanotube diameter invariant.

Coal-fired Power Plants with Flexible Amine-based CCS and Co-located Wind Power: Environmental, Economic and Reliability Outcomes

Carbon Capture and Storage (CCS) technologies provide a means to significantly reduce carbon emissions from the existing fleet of fossil-fired plants, and hence can facilitate a gradual transition from conventional to more sustainable sources of electric power. This is especially relevant for coal plants that have a CO2 emission rate that is roughly two times higher than that of natural gas plants. Of the different kinds of CCS technology available, post-combustion amine based CCS is the best developed and hence more suitable for retrofitting an existing coal plant. The high costs from operating CCS could be reduced by enabling flexible operation through amine storage or allowing partial capture of CO2 during high electricity prices. This flexibility is also found to improve the power plant’s ramp capability, enabling it to offset the intermittency of renewable power sources. This thesis proposes a solution to problems associated with two promising technologies for decarbonizing the electric power system: the high costs of the energy penalty of CCS, and the intermittency and non-dispatchability of wind power. It explores the economic and technical feasibility of a hybrid system consisting of a coal plant retrofitted with a post-combustion-amine based CCS system equipped with the option to perform partial capture or amine storage, and a co-located wind farm. A techno-economic assessment of the performance of the hybrid system is carried out both from the perspective of the stakeholders (utility owners, investors, etc.) as well as that of the power system operator.

In order to perform the assessment from the perspective of the facility owners (e.g., electric power utilities, independent power producers), an optimal design and operating strategy of the hybrid system is determined for both the amine storage and partial capture configurations. A linear optimization model is developed to determine the optimal component sizes for the hybrid system and capture rates while meeting constraints on annual average emission targets of CO2, and variability of the combined power output. Results indicate that there are economic benefits of flexible operation relative to conventional CCS, and demonstrate that the hybrid system could operate as an energy storage system: providing an effective pathway for wind power integration as well as a mechanism to mute the variability of intermittent wind power.

In order to assess the performance of the hybrid system from the perspective of the system operator, a modified Unit Commitment/ Economic Dispatch model is built to consider and represent the techno-economic aspects of operation of the hybrid system within a power grid. The hybrid system is found to be effective in helping the power system meet an average CO2 emissions limit equivalent to the CO2 emission rate of a state-of-the-art natural gas plant, and to reduce power system operation costs and number of instances and magnitude of energy and reserve scarcity.

samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files

MOTIVATION: Data from RNA-seq experiments provide us with many new possibilities to gain insights into biological and disease mechanisms of cellular functioning. However, the reproducibility and robustness of RNA-seq data analysis results is often unclear. This is in part attributed to the two counter acting goals of (a) a cost efficient and (b) an optimal experimental design leading to a compromise, e.g., in the sequencing depth of experiments.

RESULTS: We introduce an R package called samExploreR that allows the subsampling (m out of n bootstraping) of short-reads based on SAM files facilitating the investigation of sequencing depth related questions for the experimental design. Overall, this provides a systematic way for exploring the reproducibility and robustness of general RNA-seq studies. We exemplify the usage of samExploreR by studying the influence of the sequencing depth and the annotation on the identification of differentially expressed genes.

AVAILABILITY: Availability: samExploreR is available as an R package from Bioconductor (after acceptance of the paper, download link: http://www.bio-complexity.com/samExploreR_1.0.0.tar.gz).

Caractérisation structurale de l'aptamère du riborégulateur SAM-I

La détermination de la structure d’une molécule dans une cellule est souvent la première étape à la compréhension de son mode d’action. Un exemple flagrant est le riborégulateur, qui est un ARN hautement structuré capable de lier un ligand et de modifier la régulation génique chez les bactéries. Cette étude se penche sur la structure de l’aptamère d’un riborégulateur pouvant se lier au métabolite S-adénosylméthionine (SAM), qui est impliqué dans des réactions de méthylations essentielles dans une cellule. Plus précisément, le modèle sélectionné pour ces travaux provient de la famille SAM-I et est composé de quatre tiges (P1 à P4). En utilisant des techniques biophysiques telles le FRET et le single-molecule FRET (sm-FRET), nous pouvons comprendre plus en détails le dynamisme structural du repliement de l’aptamère qui se passe en deux étapes. La première étape de repliement de l’aptamère est constituée par la formation de l’état intermédiaire induite par la liaison du magnésium. Cet état a été caractérisé grâce à des mutations nucléotidiques bloquant des changements conformationnels spécifiques. Aussi, cette étude a permis d’ajouter des détails biophysiques sur la dernière étape de repliement de l’aptamère induite par la liaison de SAM. La réorganisation finale du site de liaison implique une rotation de la tige P1. D’ailleurs, la formation de la tige P1 permet le contrôle direct de l’expression génétique. Ces deux étapes permettent à l’aptamère du riborégulateur SAM d’adopter sa structure native essentielle à l’arrêt de transcription. En bref, nous décrivons en détail les mécanismes structuraux expliquant le fonctionnement du riborégulateur SAM. Certains de ces mécanismes pourraient être communs à plusieurs classes de riborégulateurs, d’où l’intérêt de prospecter d’autres cibles.

No la toques más, Sam : algunas notas sobre Adorno y el cine

En este artículo se trata de apuntar algunas de las líneas fundamentales que guían la crítica que Th.W. Adorno llevó a cabo sobre el mundo cinematográfico en vinculación a su reflexión sobre la industria cultural. Adorno abordó el cine desde múltiples perspectivas, que van desde el ámbito musicológico (gracias a su trabajo colaborativo con Hanns Eisler) hasta el sociológico (relacionado con textos tan importantes como Dialéctica de la Ilustración, que escribió a cuatro manos con Max Horkheimer). Uno de los objetivos de este artículo es el de relativizar la extendida idea del disgusto que le produjo el cine al filósofo alemán, tratando de justificar su postura con respecto al séptimo arte en el contexto de su obra completa.

Iron(III) Complexes on a Dendrimeric Basis and Various Amine Core Investigated by Mössbauer Spectroscopy

Dendrimers of various generations were synthesized by the divergent method. Starting from various amine cores (G(0a), G(0b), G(0c)) the generations were built by reaction of the amine with acrylnitrile followed by hydrogenation with DIBAL-H. Treatment with salicylaldehyde creates a fivefold coordination sphere for iron in the molecular periphery. The resulting multinuclear coordination compounds are investigated by Mossbauer spectroscopy.

La fiebre del juego ataca a Tío Sam

Fondo Margaritainés Restrepo

Coupling hydrophilic amine-containing molecules to the backbone of poly(ε-caprolactone)

A poly(ε-caprolactone) (PCL) based biodegradable polymer containing robust, amine-reactive side chains has been successfully synthesized. The specific reactivity of the side chains allows for the coupling of unmodified amine-containing molecules such as poly(l-lysine) (PLL) to PCL to occur in the presence of other unprotected functional groups. The reactivity of this polymer has been demonstrated through successful coupling of both benzylamine (a model compound) and PLL. This novel amine-reactive polymer could have numerous applications in biomedical fields such as tissue engineering and drug delivery.

Flexible and rigid amine-functionalized microporous frameworks based on different secondary building units: supramolecular isomerism, selective CO₂ capture, and catalysis

We report the synthesis, structural characterization, and porous properties of two isomeric supramolecular complexes of ([Cd(NH₂—bdc)(bphz)_0.5 ]⋅DMF⋅H₂O}_n (NH₂ —bdc=2-aminobenzenedicarboxylic acid, bphz=1,2-bis(4-pyridylmethylene)hydrazine) composed of a mixed-ligand system. The first isomer, with a paddle-wheel-type Cd₂ (COO)₄ secondary building unit (SBU), is flexible in nature, whereas the other isomer has a rigid framework based on a μ-oxo-bridged Cd₂(μ-OCO)₂ SBU. Both frameworks are two-fold interpenetrated and the pore surface is decorated with pendant -NH₂ and =N—N= functional groups. Both the frameworks are nonporous to N₂ , revealed by the type II adsorption profiles. However, at 195 K, the first isomer shows an unusual double-step hysteretic CO₂ adsorption profile, whereas the second isomer shows a typical type I CO₂ profile. Moreover, at 195 K, both frameworks show excellent selectivity for CO₂ among other gases (N₂ , O₂ , H₂ , and Ar), which has been correlated to the specific interaction of CO₂ with the -NH₂ and =N—N= functionalized pore surface. DFT calculations for the oxo-bridged isomer unveiled that the -NH₂ group is the primary binding site for CO₂ . The high heat of CO₂ adsorption (ΔH_ads =37.7 kJ mol^-1) in the oxo-bridged isomer is realized by NH₂ ⋅⋅⋅CO₂ /aromatic π⋅⋅⋅CO₂ and cooperative CO₂ ⋅⋅⋅CO₂ interactions. Further, postsynthetic modification of the -NH₂ group into -NHCOCH₃ in the second isomer leads to a reduced CO₂ uptake with lower binding energy, which establishes the critical role of the -NH₂ group for CO₂ capture. The presence of basic -NH₂ sites in the oxo-bridged isomer was further exploited for efficient catalytic activity in a Knoevenagel condensation reaction.