ITER fast plant system controller prototype based on PXIe platform

The ITER CODAC design identifies slow and fast plant system controllers (PSC). The gast OSCs are based on embedded technologies, permit sampling rates greater than 1 KHz, meet stringent real-time requirements, and will be devoted to data acquisition tasks and control purposes. CIEMAT and UPM have implemented a prototype of a fast PSC based on commercial off-the-shelf (COTS) technologies with PXI hardware and software based on EPICS

NetCDF based data archiving system applied to ITER Fast Plant System Control prototype

EURATOM/CIEMAT and Technical University of Madrid (UPM) have been involved in the development of a FPSC [1] (Fast Plant System Control) prototype for ITER, based on PXIe (PCI eXtensions for Instrumentation). One of the main focuses of this project has been data acquisition and all the related issues, including scientific data archiving. Additionally, a new data archiving solution has been developed to demonstrate the obtainable performances and possible bottlenecks of scientific data archiving in Fast Plant System Control. The presented system implements a fault tolerant architecture over a GEthernet network where FPSC data are reliably archived on remote, while remaining accessible to be redistributed, within the duration of a pulse. The storing service is supported by a clustering solution to guaranty scalability, so that FPSC management and configuration may be simplified, and a unique view of all archived data provided. All the involved components have been integrated under EPICS [2] (Experimental Physics and Industrial Control System), implementing in each case the necessary extensions, state machines and configuration process variables. The prototyped solution is based on the NetCDF-4 [3] and [4] (Network Common Data Format) file format in order to incorporate important features, such as scientific data models support, huge size files management, platform independent codification, or single-writer/multiple-readers concurrency. In this contribution, a complete description of the above mentioned solution is presented, together with the most relevant results of the tests performed, while focusing in the benefits and limitations of the applied technologies.

ITER Fast Plant System Controller Prototype Based on Commercial PXI Platform

The ITER CODAC design identifies slow and fast plant system controllers (PSC). The gast OSCs are based on embedded technologies, permit sampling rates greater than 1 KHz, meet stringent real-time requirements, and will be devoted to data acquisition tasks and control purposes. CIEMAT and UPM have implemented a prototype of a fast PSC based on commercial off-the-shelf (COTS) technologies with PXI hardware and software based on EPICS

Community Structure in Soil Porous System

Diffusion controls the gaseous transport process in soils when advective transport is almost null. Knowledge of the soil structure and pore connectivity are critical issues to understand and modelling soil aeration, sequestration or emission of greenhouse gasses, volatilization of volatile organic chemicals among other phenomena. In the last decades these issues increased our attention as scientist have realize that soil is one of the most complex materials on the earth, within which many biological, physical and chemical processes that support life and affect climate change take place. A quantitative and explicit characterization of soil structure is difficult because of the complexity of the pore space. This is the main reason why most theoretical approaches to soil porosity are idealizations to simplify this system. In this work, we proposed a more realistic attempt to capture the complexity of the system developing a model that considers the size and location of pores in order to relate them into a network. In the model we interpret porous soils as heterogeneous networks where pores are represented by nodes, characterized by their size and spatial location, and the links representing flows between them. In this work we perform an analysis of the community structure of porous media of soils represented as networks. For different real soils samples, modelled as heterogeneous complex networks, spatial communities of pores have been detected depending on the values of the parameters of the porous soil model used. These types of models are named as Heterogeneous Preferential Attachment (HPA). Developing an exhaustive analysis of the model, analytical solutions are obtained for the degree densities and degree distribution of the pore networks generated by the model in the thermodynamic limit and shown that the networks exhibit similar properties to those observed in other complex networks. With the aim to study in more detail topological properties of these networks, the presence of soil pore community structures is studied. The detection of communities of pores, as groups densely connected with only sparser connections between groups, could contribute to understand the mechanisms of the diffusion phenomena in soils.

Community Structurein Soil Porous System.

Soil is well recognized as a highly complex system. The interaction and coupled physical, chemical, and biological processes and phenomena occurring in the soil environment at different spatial and temporal scales are the main reasons for such complexity. There is a need for appropriate methodologies to characterize soil porous systems with an interdisciplinary character. Four different real soil samples, presenting different textures, have been modeled as heterogeneous complex networks, applying a model known as the heterogeneous preferential attachment. An analytical study of the degree distributions in the soil model shows a multiscaling behavior in the connectivity degrees, leaving an empirically testable signature of heterogeneity in the topology of soil pore networks. We also show that the power-law scaling in the degree distribution is a robust trait of the soil model. Last, the detection of spatial pore communities, as densely connected groups with only sparser connections between them, has been studied for the first time in these soil networks. Our results show that the presence of these communities depends on the parameter values used to construct the network. These findings could contribute to understanding the mechanisms of the diffusion phenomena in soils, such as gas and water diffusion, development and dynamics of microorganisms, among others.

Biological effects and interactions of pesticides in a soil-plant-water microcosm /

Mode of access: Internet.

Soil management system effects on N availability and tree productivity in chestnut planatations under Mediterranean conditions

Soil tillage with chisel ploughing is the conventional soil management system in chestnut stands for fruit production in Northern Portugal. A study was developed to assess the effects of three soil management systems on in situ soil N mineralization dynamics, tree nutrition status and fruit productivity, in a 50-yr old chestnut stand. The treatments were: conventional tillage with a chisel ploughing twice a year (CT), no-tillage with rainfed improved pasture with leguminous and grasses plants (NIP), and no-tillage with spontaneous herbaceous vegetation - natural pasture (NP). The CT treatment showed a strong increase of the soil N mineral concentration following soil disturbance by tillage, but the cumulative net N mineralized along the year was significantly lower (51.8 kg ha-1) than in the NIP (85.1 kg ha-1) treatment. The NP treatment (65.9 kg ha-1) did not cause a reduction in the soil N mineralization when compared to the CT treatment. The mineralization rate (g mineralized N kg-1 total N) in 2004 was about 26, 30 and 38 in the treatments CT, NP and NIP, respectively. Treatments showed different soil N dynamics, the proportion of mineralized NO3--N being lower in the NP (10-48%) than in CT and NIP treatments (53-74%). Our study indicates that no-tillage systems improve the tree nutrition status and enhance productivity

Effect of nitrogen fertilization on soil microbial biomass in an Oxisol cultivated with irrigated barley in the Brazilian Cerrado.

Abstract:The aim of this study was to evaluate the effect of different nitrogen doses and five period of sample collection, on soil microbial biomass - nitrogen (SMB-N), total nitrogen (total N) and percentual ratio of the microbial biomass and total N (SMB-N/total N) in a Oxisol cultivated with barley (Hordeum vulgare L.). The experiment was installed in June, 2005, in an area located at Embrapa Cerrados, Federal District. The experimental design was a randomized block, with three replicates. The plots received doses of nitrogen: 20 - 40 - 80 kg ha-1 N and a control without it and the subplots were period of soil sample. Three applications of N were realized: 10 kg ha-1 on the 5th day (06/14) after sowing; the rest of N was parceled in two applications with fertigation, on tillage, on the 27th (07/08) DAP, e no 43rd (07/22) DAP. Soil samples layer (0 - 10 cm deep) were collected for (SMB-N) determination and total N in six periods: 02 days before of the first fertigation; 02 days after of the first fertigation; 04 days before of the last fertigation and 04 days after of the last fertigation; on flowering stage and after harvesting. There was effect of the doses of N and the period of soil collection on the SMB-N, total N and in the ratio SMB-N/total N. The average values of total N revealed steadier in short-term (cycle of the culture) and this was not a good parameter to evaluate the behavior and N transformations in the soil-plant system. Resumen: El objetivo de este estudio fue evaluar el efecto de diferentes dosis de nitrógeno y cinco período de muestreo en la biomasa microbiana del complejo suelo - nitrogeno (BMS-N), nitrógeno total (N total) y la relación porcentual de la biomasa microbiana y N total (BMS-N/N total) en un Oxisol cultivado con cebada (Hordeum vulgare L.). El estudio se inició en junio de 2005 en la estación experimental de la Empresa de Pesquisa Agropecuaria (Embrapa-Cerrados), Distrito Federal, Brazil. El experimento se dispuso en bloques al azar con tres repeticiones. Las parcelas recibieron dosis de nitrógeno: 20 - 40 - 80 kg/ha de N más un control sin N, y las subparcelas fueron el periodo de muestro. Las aplicaciones de N se realizaron de la forma siguiente: cinco días después de la siembra (dds) se aplicaron 10 kg/ha y el resto de la dosis se aplicó con fertirrigación en dos dosis 27 y 43 dds. Las muestras de suelo (0-10 cm de profundidad) para determinar BMS-N y N total fueron tomadas, 2 días antes e igual número de días después de la primera fertirrigación y 4 días antes y después de la última, en floración y después de la cosecha. No se encontró efecto de las dosis de N y el período de muestreo en el BMS-N, N total y en la relación BMS-N/N total. Los valores medios de N total fueron más estable en el corto plazo (ciclo de la cultivo) lo que indica que éste no es un buen parámetro para evaluar la dinámica del N y sus transformaciones en el sistema suelo-planta.

北京市土壤--植物系统重金属硫的分布迁移相互间关系和主成份分析

本文选择了北京市香山北京植物园、北京动物园、长安街和北京化工厂4个功能区和国槐（Sophora japonica (L) Beauv)、毛白杨 (populus tomentosa Carr)、丁香(Syringa Oblata)、野牛草(Buohloe dactyloides (Nutt) Engelm)4种植物;采集植物样品105个、土壤样品40个;测定了各样品的镍(Ni)、锌(Zn)、铜(Cu)、镉(Cd)、铅(Pb)、铬 (Cr)、硫(S)7种元素含量;通过对样品元素含量的直观分析、回归分析、主成份分析(PCA)，得出以下结论：各样品各元素含量的最高值或异常值多出现在化工厂内，其次是长安街、动物园、北京植物园无;各功能区各样品各元素含量大小顺序多是：化工厂><长安街>动物园><北京植物园：表明化工厂内土壤、植物受污染的程度较重，其次是长安街，动物园稍轻，北京植物园则较洁净。土壤中7种元素分布特征是：S > Zn > Pb > Cr > Cu > Ni > Cd;植物中7种元素分布特征是：S > Zn >< Cu > Pb > Cr >< Ni >< Cd。7种植物样品对S、Zn、Cu、 Cd具较大的富集系数;对Ni、Pb、Cr具较小的富集系数;说明前者比后者在土壤—植系统中较易迁移。7种植物样品对S均具积累效应;毛白杨叶对zn，毛白杨叶、枝、国槐皮对Cd，野牛草对Cu也都具积累效应。国槐各器官元素含量分配是：皮含量>叶含量>枝含量;毛白杨各器官元素含量分配是：叶含量>枝含量;表明植物各器官中，枝元素含量较低。对元素含量回归分析，发现植物各器官元素含量间具显著性正相关系;植物中元素含量与土壤中元素含量绝大多数呈正相关。前者说明植物各器官生长发育的正相关性;后者说明土壤条件与植物生长发育的正相关性。对元素含量的主成份分析和样品排序，揭示出采自同一功能区的样品大都可形成一集团，但尚存在交叉、重叠和过渡的样品;化工厂集团多处在排序图Z1轴左边，长安街集团多处在Z2轴上方，北京植物园集团多处在Z1轴右边或Z2轴下方。可明确得出，化工厂土壤、植物污染较重（元素含量较高），其次是长安街;动物园污染稍轻，北京植物园较洁净的结论。还可知，化工厂、长安街某些样点污染较轻;而北京植物园、动物园某些样点污染较重。

放牧对典型草原土壤-植物系统中碳、氮、磷库特征的影响

放牧是内蒙古典型草原最主要的利用方式。放牧已对草原生态系统的结构和功能产生了巨大的影响。本论文研究了放牧对内蒙古典型草原土壤-植物系统中碳、氮、磷库特征的影响，结果表明： （1）草地开垦已使土壤C、N贮量显著损失。放牧已使羊草草原土壤C贮量表现出下降的趋势，大针茅草原没有表现出这种变化趋势。 （2）放牧尚没有使土壤全N发生显著变化，但土壤N素一些组分的比例发生了变化。放牧后，土壤NH_3-N下降，酸不溶态N比例有所提高;放牧使Fe-P比例显著降低。 （3）蒙古草原土壤微生物量C、N与土壤有机C、全N、降雨量、温度均表现出了很好的相关性。放牧对微生物量的影响与不同草原类型和放牧率有关。 （4）放牧使土壤养分元素的空间异质性加大。退化草地恢复过程中小叶锦鸡儿灌丛诱导了植物组成、生物量和土壤化学元素含量在空间上的分异，这种生态效应有利于退化草地的恢复。 （5）不同放牧强度对土壤C、N、P库和植物系统中C、N、P含量的影响不同。放牧使植物系统地上部C含量下降，N、P含量提高。高强度的放牧使土壤N、根系中的N素向表层相对聚集，表现出明显的表聚化现象。植物C/N、C/P比在中、重度放牧强度下最低，此时植物残体分解速率最高，极度放牧最终C、N循环速率减小。不考虑放牧率，研究放牧对土壤C、N、P含量的影响可能会得出矛盾的结论。 （6）放牧草地中低等植物地衣、蓝细菌在元素化学循环中的作用提高。地衣Xanthoparmelia camtschadalis （Ach.）的生物量在经度放牧草地中最高，其体内C、N含量与放牧率的关系与维管植物相似。退化草地中蓝细菌可能是最重要的N素来源。

家畜放牧对典型草原土壤-植被系统氮素转化的影响

草地生态系统中，放牧对调节物质流动和营养循环起着关键的作用。内蒙古地区已有上千年的游牧历史，放牧是该地区重要的草地利用方式之一。然而，近50年来，由于人口的剧增以及对草原的不合理利用与管理，使得内蒙古草原发生了严重的退化与沙漠化。理解放牧对氮循环的定量影响，对我们更合理地利用草地、防治生态系统的进一步退化以及探求最佳恢复途径都具有重要的意义。中国科学院内蒙古草原生态系统定位站精准设置的5种放牧强度处理（0.00, 1.33, 2.67, 4.00, 5.33 羊/公顷）为我们的研究提供了理想的平台。2005、2006年生长季期间，在经过16年不同放牧强度处理的一个典型草原样地上，我们测定了氮素输入（氮沉降、生物固氮）、转化（净氮矿化）、输出（反硝化及氨气挥发）速率等N循环的重要参量。同时，测定了微生物生物量碳、氮（Cmic，Nmic）及微生物呼吸（Rmic），研究了微生物在氮循环中的作用。另外，还测定了植物、土壤、固氮体中的15N自然丰度值，探讨了其对不同放牧强度的响应格局与机理。 结果表明，干湿混合沉降物全氮浓度最高达11.53 mg N l–1，沉降量最高为1.77 kg N ha–1m–1。月均氮沉降量与浓度正相关，它们与降水量均关系密切，前者更密切。结皮面积所占比例很小，不超过8%。结皮含氮量为1.01-1.43 g N kg–1，受放牧的影响不显著，但随放牧强度的增加有降低的趋势。土壤结皮能固氮，但固氮量不超过土壤氮含量的1倍。地耳的固氮量为结皮的10-20倍，故是主要的固氮体。尽管地耳含氮量受放牧影响不显著，但放牧是不放牧条件下地耳氮含量的1.58倍。 土壤NH4+-N浓度随季节变化范围为1.71-9.45 µg N g–1，它们在各放牧处理之间的差异不显著。土壤NO3–-N浓度变幅为0.27-11.21 µg N g–1。总无机氮浓度在不放牧条件下的变幅为2.69-14.57 µg N g–1，占总氮的0.49-2.6%;放牧条件下的变幅为2.49-8.66 µg N g–1，占总氮的0.35-1.21%。总无机氮浓度随季节和放牧强度的变化趋势与硝态氮相似，表现为2005年夏季期间有逐渐增加的趋势，而在2006年整个生长季期间有逐渐降低的趋势。不放牧比放牧条件下含氮量高，但在4个放牧处理之间的差异不显著。净氮矿化速率的变幅为–0.61-0.27 µg N g–1d–1，峰值通常出现在7月。净氮矿化速率在各处理间没有一致性差异，但中牧（2.67、4.00 羊/公顷）通常比重牧（5.33 羊/公顷）下的值高。净氮硝化速率通常很低，波动在–0.32-0.16 µg N g–1之间，2005年夏季及2006年春秋季的值相对较高。净氮硝化速率在各放牧处理之间差异不显著，但重牧条件下的值通常最低。累积净氮转化量在年际间差异大，2005年总体上遵循正态分布模式，而2006年随着放牧强度的增加有直线下降的趋势，2006年比2005年的累积量高。土壤温度和湿度比放牧强度对净氮矿化的影响更加显著。放牧强度通过调节这两个土壤因子对氮动态而产生间接影响。 反硝化和N2O的释放速率低，前者变幅为0.33-6.21µg N kg–1 d–1，后者为0.42-11.28 µg N kg–1 d–1。释放量夏季较强，春秋较弱。放牧对反硝化释放影响不显著，只在2005年对N2O释放影响显著。尽管如此，反硝化和N2O释放速率整体表现出在不放牧比放牧条件下高的趋势，且比最高放牧强度5.33 羊/公顷下的反硝化速率显著高。然而，它们在4个放牧处理之间的差异始终不显著。累积反硝化和N2O释放存在年际变化，2006年的值显著高。它们随着放牧强度的递增有逐渐降低的趋势，这在2006年表现得尤为明显，这种结果主要归因于土壤总氮量在长期放牧条件下随放牧压力的增加而逐渐降低。 氨气挥发速率变幅为0.88-3.52 g N ha–1d–1，高峰值出现在5月，2005比2006年同期的速率大。两年间放牧强度对氨气挥发的影响都较弱，2005年影响更弱。不放牧条件下的氨气挥发量通常最低，这在生长季的前期表现得更为明显，中牧及重牧条件下通常最高。放牧能影响氨气挥发与氨态氮，硝态氮及总无机氮浓度之间的关系，即不放牧条件下相关性显著，而放牧条件下相关性不显著。年际间氨气挥发速率与无机氮浓度之间的关系趋势相反，2005年负相关，2006年正相关。在水分充足的2006年，所有处理条件下氨气挥发与土壤水分及温度之间显著相关，但在单独每个放牧处理下，相关性不显著。 Cmic变幅大，为13.97-350.45 μg C g–1，占土壤总有机碳的1.58-8.35%。最高和最低值分别出现在夏季和春季。它们在各处理间差异不显著，不放牧下的值相对偏高。Cmic与土壤有机C和全N、前期的立枯、凋落量及含N量、优势种前期的地上生物量、根系生物量、土壤温度以及水分之间关系密切。氮素状态如氨态氮、总无机氮含量、反硝化以及N2O释放速率，氨气挥发速率与Cmic之间关系密切。Nmic占土壤全氮的0.41-2.74%，不受季节和放牧强度的显著影响。Nmic与可溶性N，表土层根系全N，立枯有机C，地上生物量之间关系密切。氮循环过程中氨气挥发速率受Nmic的影响。Rmic随季节而变化，通常5月份值最高。Rmic随着放牧强度的增加有稍降低的趋势。Rmic与土壤可溶性C、有机C，不同土层根系有机C，凋落物、立枯量及其C、N含量、全N，地上生物量，优势种前期的生物量，土壤温度之间关系密切。土壤氮循环动态如氨态氮、硝态氮、总无机氮浓度及反硝化速率与Rmic之间关系密切。 土壤、植物、地耳、生物结皮的δ15N值与放牧强度之间相关关系不显著。然而，放牧有增加表层土和植物的δ15N值而降低表土、地耳、结皮的δ15N值的趋势。表层土δ15N值与前一年生长季末期硝态氮及总无机氮浓度，反硝化速率及累积氨气挥发之间密切相关。 土壤碳含量的变幅为10.44-17.19 g C kg–1，全氮量的变幅为0.54-0.82 g N kg–1。长期的高强度放牧降低了土壤碳、氮储量。根系碳、氮含量分别为土壤碳、氮含量的40-50和10倍。立枯和凋落物有机碳含量变幅为446.94-507.01 g C kg–1，与放牧强度之间关系不密切;氮含量变幅为4.58-7.18 g N kg–1，与放牧强度之间显著负相关。优势种木地肤、冷蒿的含碳量与放牧强度之间相关不显著，但含氮量与之显著相关。 综述以上结果，不同放牧强度对内蒙草地生态系统氮循环中不同过程产生影响的程度各不相同，这种影响主要是通过它与土壤环境因子如温度、水分的联合作用而间接产生。

双氰胺对设施菜地土壤-植物系统氮运移的影响

在设施菜地条件下，研究了配施双氰胺对土壤-植物系统NO3--N 迁移累积和作物产量的影响。结果表明，配施 2 %、5 % 和10 % 浓度的双氰胺均可以有效降低设施菜地耕层土壤 NO3--N 的淋溶和累积，推迟土壤 NO3--N 含量高峰出现时间15 d 以上。而且随着双氰胺配施浓度的升高，其硝化抑制效果越明显。 配施不同浓度的双氰胺可不同程度降低砂壤质潮棕壤 40 - 120 cm 土层土壤 NO3--N 的累积，其中配施 10 % 双氰胺对控制 NO3--N 在深层土壤中的累积和淋溶效果最显著，对减少设施菜地土壤和地下水 NO3--N 污染的环境治理有较高的参考价值。在试验期间未观测到粘壤质潮棕壤试验样地中各施肥处理NO3--N 在40 cm 以下的深层土壤中的累积和淋溶。 配施不同浓度的双氰胺调整了土壤硝态氮供应量和供应时间，不同程度的降低了收获期苦苣可食部分硝酸盐的含量，部分施肥处理已达到极显著水平(P<0.01)。各试验处理苦苣可食部分硝酸盐含量均低于 3000 mg•kg-1，达到国家叶菜类安全食品标准 (GB 19338-2003)，且部分处理已低于1000 mg•kg-1。同时，添加双氰胺可明显降低苦苣可食部分亚硝酸盐的含量，使苦苣亚硝酸盐含量低于 2 mg•kg-1，达到国家绿色食品绿叶类蔬菜卫生标准 (NY/T 743-2003)，但不同双氰胺配施浓度之间差异不明显。此外，配施双氰胺在一定程度上提高了作物产量，但在增产效果与双氰胺的配施量不成正比。

土壤－植物系统中Cd、Cu和石油烃复合污染效应与机理研究

本研究模拟在Cd、Cu和石油烃复合污染条件上对水稻的生态效应，探讨污染物在土壤－－植物系统中迁移转化规律、污染物间的交互作用关系及其机制。结果表明：Cu与石油烃及Cd与石油烃对水稻的生态效应表明它们之间均存在拮抗作用，Cd、Cu和石油烃三者之间也存在拮抗作用，Cd与Cu之间在低浓度时表现为拮抗作用，而在高浓度时则表现为协同作用。污染物浓度是影响污染物间交互作用关系的重要因子。