A maize bacterial artificial chromosome (BAC) library from the European flint inbred line F2

We report here the construction and characterisation of a BAC library from the maize flint inbred line F2, widely used in European maize breeding programs. The library contains 86,858 clones with an average insert size of approximately 90 kb, giving approximately 3.2-times genome coverage. High-efficiency BAC cloning was achieved through the use of a single size selection for the high-molecular-weight genomic DNA, and co-transformation of the ligation with yeast tRNA to optimise transformation efficiency. Characterisation of the library showed that less than 0.5% of the clones contained no inserts, while 5.52% of clones consisted of chloroplast DNA. The library was gridded onto 29 nylon filters in a double-spotted 8 × 8 array, and screened by hybridisation with a number of single-copy and gene-family probes. A 3-dimensional DNA pooling scheme was used to allow rapid PCR screening of the library based on primer pairs from simple sequence repeat (SSR) and expressed sequence tag (EST) markers. Positive clones were obtained in all hybridisation and PCR screens carried out so far. Six BAC clones, which hybridised to a portion of the cloned Rp1-D rust resistance gene, were further characterised and found to form contigs covering most of this complex resistance locus.

Produktion, skador och grenegenskaper hos 10-årig tall i ett kombinerat förbands- och avkommeförsök : Volume production, damages and branch properties in a 10-year old combined spacing and progeny trial of Scots pine

A Scots pine (Pinus sylvestris) progeny trial was established in 1990, in the southwestern part of Sweden. The offspring was from 30 plus trees. The trial is located on abandoned agricultural land and has a single tree block design with a variation in spacing. The trial has been damaged by voles. At a tree age of ten years, growth, damages and branch properties were estimated. An analysis of variance on height, diameter and stem volume shows significant difference between spacing and progenies as well as interactions between these factors. As indicated by a better annual height increment and fewer and thinner branches at each whorl the densest spacing has the highest potential to produce quality logs.There were also differences between progenies in growth and quality traits. Some progenies combined good growth and branch characters with low mortality, straight stems and few damages. Other progenies had superior volume production.

Influência do modelo de análise estatística e da forma das parcelas experimentais na seleção de clones de Eucalyptus spp.

Foram avaliadas três formas de parcelas experimentais (retangular, uma linha - linear e parcela de uma árvore - STP) em testes clonais de Eucalyptus spp, utilizando-se três experimentos, cada um com 18 clones. Foram usados três modelos de análise (mínimos quadrados ordinários - ANOVA tradicional, modelos mistos com fator clone fixo ou com fator clone aleatório - REML/BLUP). Os dois primeiros modelos apresentaram resultados similares. Com REML/BLUP houve estreitamento das predições em relação às amplitudes obtidas com as médias, e essa redução foi proporcionalmente maior com parcelas retangulares e STP. O ordenamento dos clones também foi similar com esses dois tipos de parcelas. É provável que com parcelas STP haja um balanço compensatório das alocompetições, pois se pode trabalhar com maior número de repetições e menor custo. Portanto, com parcelas STP haverá economia de recursos e sem prejuízos para o Programa de Melhoramento Florestal.

Influência do modelo de análise estatística e da forma das parcelas experimentais na seleção de clones de Eucalyptus spp

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Eficiência de utilização de nutrientes em híbridos interespecíficos de eucalipto

Pós-graduação em Agronomia (Genética e Melhoramento de Plantas) - FCAV

Crescimento e qualidade da madeira de plantas jovens de híbridos de Eucalyptus grandis x E. urophylla

Pós-graduação em Agronomia (Genética e Melhoramento de Plantas) - FCAV

Análise cladística e descrição de um grupo novo de espécies de Edessa (Heteroptera, Pentatomidae, Edessinae)

A subordem Heteroptera, é o maior táxon dentre os hemimetábolos, composta por sete infraordens, 23 superfamílias e 80 famílias. Dentre estas, Pentatomidae é a quarta família mais numerosa e diversa entre os heterópteros, possuindo 4.100 espécies distribuídas em 760 gêneros e em sete subfamílias. Edessinae possui atualmente cerca de 290 espécies distribuídas em seis gêneros: Edessa, Brachystethus, Peromatus, Olbia, Pantochlora e Doesburgedessa. De todos estes gêneros, Edessa é o que possui o maior número de espécies e o que concentra quase a totalidade dos problemas taxonômicos e nomenclaturas da subfamília. Devido ao seu tamanho, a revisão está sendo feita em partes, a partir do estudo de grupos de espécies unidos por possíveis sinapomorfias. Assim o objetivo geral do trabalho é propor e descrever um novo grupo de espécies com base em uma análise cladística. Para o estudo foram examinados 114 exemplares pertencentes a instituições nacionais e internacionais e a coleções particulares. As descrições seguem um modelo tradicional também usado para Edessinae. São apresentadas medidas e fotografias das espécies, desenhos do processo metasternal e genitália de ambos os sexos, chave dicotômica e mapa de distribuição. Para a analise cladística, foram levantados 22 caracteres morfológicos polarizados através do método do grupo externo, composto pelas espécies: Tibilis sp., Neotibilis fulvicornis, Brachystethus cribrus, Pantochlora vivida, Olbia elegans, Peromatus sp., Doesburgedessa elongatispina, Edessa cervus e Edessa affinis. Através do programa NONA foi obtida uma única árvore mais parcimoniosa, com 30 passos, índice de Consistência de 0,93 e índice de Retenção de 0,97. Com base nessa análise, o monofiletismo do grupo de espécie é confirmado. Assim, o grupo stolida aqui proposto é formado por quatro espécies já descritas Edessa stolida (Linnaeus, 1758), Edessa heymonsi Breddin, 1904, Edessa verhoeffi Breddin, 1904 e Edessa paravinula Barber, 1935 e por cinco espécies novas. O grupo stolida de Edessa é reconhecido pela presença de uma expansão que se projeta da margem lateral da face posterior do segmento X; região mediana do parâmero com uma projeção de formato triangular; ausência de uma faixa ou de tufo de pelos na face posterior do segmento X e gonapófise 8 esclerotizada. As espécies do grupo stolida são muito parecidas externamente e sua identificação só pode ser feita através da análise da genitália externa de ambos os sexos. A análise cladística apóia a idéia tradicional e o grupo stolida deve ser considerado parte do subgênero Hypoxys de Edessa. A topologia do cladograma resultante é (Tibilis sp. + Neotibilis fulvicornis (Brachystethus cribus (Pantochlora vivida ((Doesbuergedessa elongatispina + Edessa cervus (Peromatus sp. + Olbia elegans)) (Edessa affinis ((Edessa sp. nov 3 + Edessa sp. nov 3a) ((Edessa sp. nov 2 (Edessa verhoeffi + Edessa heymonsi)) (Edessa stolida (Edessa sp. nov 4 (Edessa paravinula + Edessa sp. nov 5))))))))). A fêmea de Edessa stolida e o macho de Edessa verhoeffi são descritos pela primeira vez neste trabalho. Os registros de distribuição das espécies são ampliados.

Dinâmica espaço-temporal de danos do cancro basal em Eucalyptus grandis

Pós-graduação em Agronomia (Proteção de Plantas) - FCA

Phylogeny of Lundia (Bignoniaceae) based on ndhF and PepC sequences

The circumscription of genera belonging to tribe Bignonieae (Bignoniaceae) has traditionally been complex, with only a few genera having stable circumscriptions in the various classification systems proposed for the tribe. The genus Lundia, for instance, is well characterized by a series of morphological synapomorphies and its circumscription has remained quite stable throughout its history. Despite the stable circumscription of Lundia, the circumscription of species within the genus has remained problematic. This study aims to reconstruct the phylogeny of Lundia in order to refine species circumscriptions, gain a better understanding of relationships between taxa, and identify potential morphological synapomorphies for species and major clades. We sampled 26 accessions representing 13 species of Lundia, and 5 outgroups, and reconstructed the phylogeny of the genus using a chloroplast (ndhF) and a nuclear marker (PepC). Data derived from sequences of the individual loci were analyzed using parsimony and Bayesian inference, and the combined molecular dataset was analyzed with Bayesian methods. The monophyly of Lundia nitidula, a species with a particularly complex circumscription, was tested using Shimodaira-Hasegawa (SH) test and the approximately unbiased test for phylogenetic tree selection (AU test). In addition, 40 morphological characters were mapped onto the tree that resulted from the analysis of the combined molecular dataset in order to identify morphological synapomorphies of individual species and major clades. Lundia and most species currently recognized within the genus were strongly supported as monophyletic in all analyses. One species, Lundia nitidula, was not resolved as monophyletic, but the monophyly of this species was not rejected by the AU and SH tests. Lundia sect. Eriolundia is resolved as paraphyletic in all analyses, while Lundia sect. Eulundia is monophyletic and supported by the same morphological characters traditionally used to circumscribe this section. The phylogeny of Lundia contributed important information for a better circumscription of species and served as basis the taxonomic revision of the genus.

A species-level supertree of Crocodyliformes

With fossils found worldwide, Crocodyliformes stands as one of the best documented vertebrates over the Mesozoic and Cenozoic. The multiple phylogenetic hypotheses of relationship proposed for the group allow plenty of space for contentious results, partially due to the small overlapping of taxa and disagreeing homology statements among studies. We present two supertrees of Crocodyliformes, based on different protocols of source tree selection, summarising phylogenetic data for the group into a 'synthetic consensus'. The consensus of the most parsimonious trees, containing 184 terminal taxa, has a remarkably well-resolved branching structure, which may serve as a framework for further macroevolutionary studies. In addition, the IterPCR script was for the first time used in the supertree context to build a reduced consensus tree with the pruning of unstable taxa.

An Extreme Case of Plant-Insect Codiversification: Figs and Fig-Pollinating Wasps

It is thought that speciation in phytophagous insects is often due to colonization of novel host plants, because radiations of plant and insect lineages are typically asynchronous. Recent phylogenetic comparisons have supported this model of diversification for both insect herbivores and specialized pollinators. An exceptional case where contemporaneous plant-insect diversification might be expected is the obligate mutualism between fig trees (Ficus species, Moraceae) and their pollinating wasps (Agaonidae, Hymenoptera). The ubiquity and ecological significance of this mutualism in tropical and subtropical ecosystems has long intrigued biologists, but the systematic challenge posed by >750 interacting species pairs has hindered progress toward understanding its evolutionary history. In particular, taxon sampling and analytical tools have been insufficient for large-scale cophylogenetic analyses. Here, we sampled nearly 200 interacting pairs of fig and wasp species from across the globe. Two supermatrices were assembled: on an average, wasps had sequences from 77% of 6 genes (5.6 kb), figs had sequences from 60% of 5 genes (5.5 kb), and overall 850 new DNA sequences were generated for this study. We also developed a new analytical tool, Jane 2, for event-based phylogenetic reconciliation analysis of very large data sets. Separate Bayesian phylogenetic analyses for figs and fig wasps under relaxed molecular clock assumptions indicate Cretaceous diversification of crown groups and contemporaneous divergence for nearly half of all fig and pollinator lineages. Event-based cophylogenetic analyses further support the codiversification hypothesis. Biogeographic analyses indicate that the present-day distribution of fig and pollinator lineages is consistent with a Eurasian origin and subsequent dispersal, rather than with Gondwanan vicariance. Overall, our findings indicate that the fig-pollinator mutualism represents an extreme case among plant-insect interactions of coordinated dispersal and long-term codiversification.

Effects of Silvicultural Practices on Soil Carbon and Nitrogen in a Nitrogen Saturated Central Appalachian (USA) Hardwood Forest Ecosystem

Silvicultural treatments represent disturbances to forest ecosystems often resulting in transient increases in net nitrification and leaching of nitrate and base cations from the soil. Response of soil carbon (C) is more complex, decreasing from enhanced soil respiration and increasing from enhanced postharvest inputs of detritus. Because nitrogen (N) saturation can have similar effects on cation mobility, timber harvesting in N-saturated forests may contribute to a decline in both soil C and base cation fertility, decreasing tree growth. Although studies have addressed effects of either forest harvesting or N saturation separately, few data exist on their combined effects. Our study examined the responses of soil C and N to several commercially used silvicultural treatments within the Fernow Experimental Forest, West Virginia, USA, a site with N-saturated soils. Soil analyses included soil organic matter (SOM), C, N, C/N ratios, pH, and net nitrification. We hypothesized the following gradient of disturbance intensity among silvicultural practices (from most to least intense): even-age with intensive harvesting (EA-I), even-age with extensive harvesting, even-age with commercial harvesting, diameter limit, and single-tree harvesting (ST). We anticipated that effects on soil C and N would be greatest for EA-I and least with ST. Tree species exhibited a response to the gradient of disturbance intensity, with early successional species more predominant in high-intensity treatments and late successional species more predominant in low-intensity treatments. Results for soil variables, however, generally did not support our predictions, with few significant differences among treatments and between treatments and their paired controls for any of the measured soil variables. Multiple regression indicated that the best predictors for net nitrification among samples were SOM (positive relationship) and pH (negative relationship). This finding confirms the challenge of sustainable management of N-saturated forests.

Stand scale variability of topsoil organic matter composition in a high-elevation Norway spruce forest ecosystem

Our knowledge about the effect of single-tree influence areas on the physicochemical properties of the underlying mineral soil in forest ecosystems is still limited. This restricts our ability to adequately estimate future changes in soil functioning due to forest management practices. We studied the stand scale spatial variation of different soil organic matter species investigated by 13C NMR spectroscopy, lignin phenol and neutral sugar analysis under an unmanaged mountainous high-elevation Norway spruce (Picea abies L.) forest in central Europe. Multivariate geostatistical approaches were applied to relate the spatial patterns of the different soil organic matter species to topographic parameters, bulk density, oxalate- and dithionite-extractable iron, pH, and the impact of tree distribution. Soil samples were taken from the mineral top soil. Generally, the stand scale distribution patterns of different soil organic matter compounds could be divided into two groups: Those compounds, which were significantly spatially correlated with topography/altitude and those with small scale spatial pattern (range ≤ 10 m) that was closely related to tree distribution. The concentration of plant-derived soil organic matter components, such as lignin, at a given sampling point was significantly spatially related to the distance of the nearest tree (p ≤ 0.05). In contrast, the spatial distribution of mainly microbial-derived compounds (e.g. galactose and mannose) could be attributed to the dominating impact of small-scale topography and the contribution of poorly crystalline iron oxides that were significantly larger in the central depression of the study site compared to crest and slope positions. Our results demonstrate that topographic parameters dominate the distribution of overall topsoil organic carbon (OC) stocks at temperate high-elevation forest ecosystems, particularly in sloped terrain. However, trees superimpose topography-controlled OC biogeochemistry beneath their crown by releasing litter and changing soil conditions in comparison to open areas. This may lead to distinct zones with different mechanisms of soil organic matter degradation and also stabilization in forest stands.

Macrofossils as records of plant responses to rapid Late Glacial climatic changes at three sites in the Swiss Alps

Plant macrofossils from the end of the Younger Dryas were analysed at three sites, Gerzensee (603 m asl), Leysin (1230 m asl), and Zeneggen (1510 m asl). For the first two sites an oxygen-isotope record is also available that was used to develop a time scale (Schwander et al., this volume); dates refer therefore to calibrated years according to the GRIP time scale. Around Gerzensee a pine forest with some tree birches grew during the Younger Dryas. With the onset of the isotopic shift initiating the rapid warming (about 11,535 cal. years before 1950), the pine forest became more productive and denser. At Leysin no trees except some juniper scrub grew during the Younger Dryas. Tree birches, pine, and poplar immigrated from lower altitudes and arrived after the end of the isotopic shift (about 11,487 B.P.), i.e., at the beginning of the Preboreal (at about 11,420 B.P.). Zeneggen is situated somewhat higher than Leysin, but single tree birches and pines survived the Younger Dryas at the site. At the beginning of the Preboreal their productivity and population densities increased. Simultaneously shifts from Nitella to Chara and from silt to gyttja are recorded, all indicating rapidly warming conditions and higher nutrient levels of the lake water (and probably of the soils in the catchment). At Gerzensee the beginning of the Younger Dryas was also analysed: the beginning of the isotopic shift correlates within one sample (about 15 years) to rapid decreases of macrofossils of pines and tree birches.

Revisão taxonômica e filogenia do gênero Megalobrachium Stimpson, 1858 (Crustacea: Decapoda: Anomura: Porcellanidae)

O presente trabalho trata do gênero de porcelanídeos Megalolobrachium Stimpson, 1858 e está organizado em três partes: (1) uma revisão taxonômica das espécies atualmente atribuídas a Megalobrachium Stimpson, 1858; (2) uma revisão da diversidade morfológica do gênero em um contexto maior dentro de Porcellanidae; e (3) uma análise cladística a partir de dados morfológicos com o intuito de testar o monofiletismo de Megalobrachium e propor a primeira hipótese filogenética para o gênero. A revisão taxonômica se baseou no estudo de material abundante de diferentes localidades do Pacífico oriental e Atlântico ocidental. Uma nova espécie de Megalobrachium é descrita com base no material das costas pacíficas do Panamá e Colômbia, totalizando 13 espécies em Megalobrachium. Para a análise filogenética, foram obtidos 151 caracteres; o grupo-externo foi composto por quatro espécies de três gêneros: Pachycheles Stimpson, 1858, Pisidia Leach, 1820, e Porcellana Lamarck, 1801. Uma única árvore (314 passos; IC: 64; IR: 80) foi obtida, com dois clados. O primeiro clado inclui espécies com lobos da fronte marcadamente flexionados, flagelo da antena curto, com artículos longos, patas ambulatórias curtas e robustas, abdome subtriangular em machos, pleópodo feminino iv com três segmentos, e urópodos curtos. O segundo clado contém espécies com lobos da fronte não flexionados, flagelo da antena longo, com artículos curtos, patas ambulatórias longas e delgadas, abdome sub-retangular, pleópodo feminino iv com dois segmentos, urópodos longos. O primeiro clado corresponde a Porcellanopsis Rathbun, 1910 (espécie-tipo P. festae (Nobili, 1901)), previamente tratado como sinônimo de Megalobrachium. Contudo, a combinação de diferenças morfológicas entre Megalobrachium e Porcellanopsis justifica a revalidação de Porcellanopsis. Três espécies foram erroneamente registradas no Pacífico oriental (M. mortenseni Haig, 1962, P. rosea (Rathbun, 1900) e P. soriata (Say, 1818)); essas espécies são exclusivamente distribuídas no Atlântico ocidental.