Rapid Biodiversity Assessment and Monitoring Method for Highly Diverse Benthic Communities: A Case Study of Mediterranean Coralligenous Outcrops

Increasing anthropogenic pressures urge enhanced knowledge and understanding of the current state of marine biodiversity. This baseline information is pivotal to explore present trends, detect future modifications and propose adequate management actions for marine ecosystems. Coralligenous outcrops are a highly diverse and structurally complex deep-water habitat faced with major threats in the Mediterranean Sea. Despite its ecological, aesthetic and economic value, coralligenous biodiversity patterns are still poorly understood. There is currently no single sampling method that has been demonstrated to be sufficiently representative to ensure adequate community assessment and monitoring in this habitat. Therefore, we propose a rapid non-destructive protocol for biodiversity assessment and monitoring of coralligenous outcrops providing good estimates of its structure and species composition, based on photographic sampling and the determination of presence/absence of macrobenthic species. We used an extensive photographic survey, covering several spatial scales (100s of m to 100s of km) within the NW Mediterranean and including 2 different coralligenous assemblages: Paramuricea clavata (PCA) and Corallium rubrum assemblage (CRA). This approach allowed us to determine the minimal sampling area for each assemblage (5000 cm² for PCA and 2500 cm²for CRA). In addition, we conclude that 3 replicates provide an optimal sampling effort in order to maximize the species number and to assess the main biodiversity patterns of studied assemblages in variability studies requiring replicates. We contend that the proposed sampling approach provides a valuable tool for management and conservation planning, monitoring and research programs focused on coralligenous outcrops, potentially also applicable in other benthic ecosystems

Efficiency in inventories of ants in a forest reservein Central Amazonia

The objective of this work was to evaluate an inventory method efficiency for ants. We used subsamples collected in 24 transects of 100 m, distributed in 6 plots of 600 ha each in primary forest, as part of a long-term project. Ten litter subsamples were extracted per transect using Winkler extractors. Ants were identified to genus level, and Crematogaster, Gnamptogenys and Pachycondyla genera to species/morphospecies level. To evaluate the consequences of reduced sampling on the retention of ecological information, we estimated the lowest number of subsamples needed to detect the effects of environmental variables. Multidimensional scaling (MDS) was used to generate dissimilarity matrices, and Mantel correlations between each reduced-sampling effort and maximum effort were used as an index of how much information was maintained and could still be used in multivariate analyses. Lower p-values was observed on the effect of soil pH in the community of genera, and on the effect of the litter volume for the community of Crematogaster. The trend was still detectable in the analysis based on reduced-sampling. The number of subsamples can be reduced, and the cost-efficiency of the protocol can be improved with little loss of information.

A Computer program for estimating population size by the removal method

A BASIC computer program (REMOVAL) was developed to compute in a VAXNMS environment all the calculations of the removal method for population size estimation (catch-effort method for closed populations with constant sampling effort). The program follows the maximum likelihood methodology,checks the failure conditions, applies the appropriate formula, and displays the estimates of population size and catchability, with their standard deviations and coefficients of variation, and two goodness-of-fit statistics with their significance levels. Data of removal experiments for the cyprinodontid fish Aphanius iberus in the Alt Emporda wetlands are used to exemplify the use of the program

Taxonomy and Species Richness of Amazonian Pimplinae and Rhyssinae (hymenoptera: ichneumonidae)

The Amazonian region, the biggest rain forest of our planet, is known for its extraordinary biodiversity. Most of this diversity is still unexplored and new species of different taxa are regularly found there. In this region, as in most areas of the world, insects are some of the most abundant organisms. Therefore, studying this group is important to promote the conservation of these highly biodiverse ecosystems of the planet. Among insects, parasitoid wasps are especially interesting because they have potential for use as biodiversity indicators and biological control agents in agriculture and forestry. The parasitoid wasp family Ichneumonidae is one of the most species rich groups among the kingdom Animalia. This group is still poorly known in many areas of the world; the Amazonian region is a clear example of this situation. Ichneumonids have been thought to be species poor in Amazonia and other tropical areas. However, recent studies are suggesting that parasitoid wasps may be quite abundant in Amazonia and possibly in most tropical areas of the world. The aim of my doctoral thesis is to study the species richness and taxonomy of two of the best known ichneumonid subfamilies in the Neotropical region, Pimplinae and Rhyssinae. To do this I conducted two extensive sampling programs in the Peruvian Amazonia. I examined also a large number of Neotropical ichneumonids deposited to different natural history museums. According to the results of my thesis, the species richness of these parasitoids in the Amazonian region is considerably higher than previously reported. In my research, I firstly further develop the taxonomy of these parasitoids by describing many new species and reporting several new faunistic records (I, II, III). In this first part I focus on two genera (Xanthopimpla and Epirhyssa) which were thought to be rather species poor. My thesis demonstrates that these groups are actually rather species rich in the Amazonian region. Secondly, I concentrate on the species richness of these parasitoids in a global comparison showing that the Neotropical region and especially the Peruvian Amazonia is one of the most species rich areas of Pimpliformes ichneumonids (V). Furthermore, I demonstrate that with the data available to date no clear latitudinal gradient in species richness is visible. Thirdly, increasing the macroecological knowledge of these parasitoids I show that some previously unreported ichneumonid subfamilies are present in the Amazonian region (IV). These new insights and the results of the global comparison of ichneumonid inventories suggest that the previous belief of low diversity in the tropics is most likely related to a lack of sampling effort in the region. Overall, my research increases the knowledge of Neotropical ichneumonids highlighting the importance of Peruvian Amazonia as one of the diversity hotspots of parasitoid wasps.

Identifying management zones in agricultural fields using spatially constrained classification of soil and ancillary data

Site-specific management requires accurate knowledge of the spatial variation in a range of soil properties within fields. This involves considerable sampling effort, which is costly. Ancillary data, such as crop yield, elevation and apparent electrical conductivity (ECa) of the soil, can provide insight into the spatial variation of some soil properties. A multivariate classification with spatial constraint imposed by the variogram was used to classify data from two arable crop fields. The yield data comprised 5 years of crop yield, and the ancillary data 3 years of yield data, elevation and ECa. Information on soil chemical and physical properties was provided by intensive surveys of the soil. Multivariate variograms computed from these data were used to constrain sites spatially within classes to increase their contiguity. The constrained classifications resulted in coherent classes, and those based on the ancillary data were similar to those from the soil properties. The ancillary data seemed to identify areas in the field where the soil is reasonably homogeneous. The results of targeted sampling showed that these classes could be used as a basis for management and to guide future sampling of the soil.

Experimental verification of suction sampler capture efficiency in grasslands of differing vegetation height and structure

1. Suction sampling is a popular method for the collection of quantitative data on grassland invertebrate populations, although there have been no detailed studies into the effectiveness of the method. 2. We investigate the effect of effort (duration and number of suction samples) and sward height on the efficiency of suction sampling of grassland beetle, true bug, planthopper and spider Populations. We also compare Suction sampling with an absolute sampling method based on the destructive removal of turfs. 3. Sampling for durations of 16 seconds was sufficient to collect 90% of all individuals and species of grassland beetles, with less time required for the true bugs, spiders and planthoppers. The number of samples required to collect 90% of the species was more variable, although in general 55 sub-samples was sufficient for all groups, except the true bugs. Increasing sward height had a negative effect on the capture efficiency of suction sampling. 4. The assemblage structure of beetles, planthoppers and spiders was independent of the sampling method (suction or absolute) used. 5. Synthesis and applications. In contrast to other sampling methods used in grassland habitats (e.g. sweep netting or pitfall trapping), suction sampling is an effective quantitative tool for the measurement of invertebrate diversity and assemblage structure providing sward height is included as a covariate. The effective sampling of beetles, true bugs, planthoppers and spiders altogether requires a minimum sampling effort of 110 sub-samples of duration of 16 seconds. Such sampling intensities can be adjusted depending on the taxa sampled, and we provide information to minimize sampling problems associated with this versatile technique. Suction sampling should remain an important component in the toolbox of experimental techniques used during both experimental and management sampling regimes within agroecosystems, grasslands or other low-lying vegetation types.

Water beetles in mountainous regions in southeastern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Feeding behaviour and ecosystem role of the red mangrove crab Goniopsis cruentata (Latreille, 1803) (Decapoda, Grapsoidea) in a subtropical estuary on the brazilian coast

This study provides information concerning the feeding behaviour of Goniopsis cruentata (Latreille, 1803), through analysis of stomach contents according to demographic categories. Collections were carried out monthly from May 2005 through April 2006 in a subtropical estuary on the southeastern Brazilian coast (23 degrees 29'24 '' S 45 degrees 10'12 '' W). The crabs were collected by hand, with a 2-hour sampling effort by three people. In the laboratory, the crabs were sexed and measured for greatest carapace width, and grouped into demographic categories: adult males, juvenile males, adult females, juvenile females, and ovigerous females. For the fullness analysis, the stomachs were grouped into two categories: (1) E = Empty, with no food; and (2) F = Full, whether partially filled or totally. The frequency-of-occurrence method was used to characterize feeding behaviour, and the demographic categories recognired were compared. We obtained stomachs from 171 adult males, 69 juvenile males, 136 adult females, 72 juvenile females, and 41 ovigerous females, of which 85.6% were full. of the eight food items recorded, sediment was the most frequent, and unidentified material was the least. Goniopsis cruentata can be characterized as a generalist feeder, exploiting most of the food items available in the mangrove swamps. In spite of this generalist behaviour, the dominant presence of sediment suggests that G. cruentata is primarily a detritivore that exploits particulate organic matter from microbial biodegradation, one of the most important mangrove functions. The trophic role of this crab in the ecosystem showed no significant differences among the demographic categories, and seems to be wider than those observed for sesarmid and ocypodid mangrove crabs. These ecosystem engineers may occupy different positions in the trophic chains of estuarine environments.

Estrutura e composição da ictiofauna de riachos do rio Paranapanema, Sudeste e Sul do Brasil

Foram amostrados 17 trechos de riachos com 100 m de extensão, todos de ordem igual ou menor a três, ao longo de ambas as margens do canal principal do Rio Paranapanema, SP e PR. O ponto médio de cada trecho foi georreferenciado via satélite com receptor GPS e o uso de metodologia padronizada de coleta de dados ambientais e peixes (baseada principalmente na pesca elétrica), possibilitou a obtenção das seguintes informações em cada local: 1) composição taxonômica da ictiofauna e contribuição, em termos de número de indivíduos e biomassa, de cada espécie para a ictiofauna local como um todo; 2) documentação fotográfica de espécimes representativos de cada espécie coletada com sua coloração natural; 3) descrição de cada ambiente coletado, com ilustrações fotográficas coloridas, e seus principais parâmetros bióticos e abióticos. No total foram coletados 3.683 exemplares, pertencentes a seis ordens, 16 famílias, 37 gêneros e 52 espécies, com biomassa total de 16,8 kg. Das espécies coletadas, aproximadamente 36% pertencem a ordem Siluriformes, 36% a Characiformes, 11% a Gymnotiformes, 10% a Perciformes, 4% a Cyprinodontiformes e 2% a Synbranchiformes. As espécies mais abundantes em termos de número de indivíduos foram Astyanax altiparanae (15,2%) e Astyanax sp. 1 (12,3%); aquelas com maior biomassa foram A. altiparanae (28%) e Geophagus brasiliensis (13%). A composição da ictiocenose em termos de abundância e biomassa por família indica a predominância expressiva de Characidae, seguida por Loricariidae, Pimelodidae e Cichlidae. Dentre os trechos amostrados, o trecho 14 (24 espécies) e o 13 (cinco espécies), apresentaram a maior e a menor riqueza em espécies, respectivamente, coincidindo com os valores obtidos para o índice de diversidade específica de Shannon-Wienner (H´= 0,99 e 0,32, respectivamente). A riqueza média encontrada foi de 11 espécies por trecho de riacho. Na estimativa de riqueza por extrapolação para o conjunto total de riachos amostrados na bacia do rio Paranapanema, obtivemos um valor de 69 espécies (erro padrão igual a quatro) indicando ser necessário um esforço amostral adicional moderado para atingir a assíntota da curva. Das 52 espécies coletadas, oito (aproximadamente 15% do total) são seguramente novas, cinco (aproximadamente 10% do total) possuem status taxonômico ainda indefinido, enquanto outras três (aproximadamente 6% do total) são espécies introduzidas. Analisando a estrutura trófica e espacial da ictiocenose estudada, as 10 espécies numericamente dominantes nos riachos estudados dividem-se, em ordem decrescente de importância numérica, em quatro guildas: onívoros nectônicos; invertívoros bentônicos; perifitívoros; e onívoros bentônicos. Uma chave de identificação para todas as espécies de peixes coletadas durante este estudo é fornecida ao final deste trabalho.

Estrutura e composição da ictiofauna de riachos da bacia do Rio Grande no estado de São Paulo, sudeste do Brasil

O ponto médio de cada trecho foi georreferenciado via satélite com receptor GPS e o uso de metodologia padronizada de coleta de dados ambientais e peixes (baseada principalmente na pesca elétrica), possibilitou a obtenção das seguintes informações em cada local: 1) composição taxonômica da ictiofauna e contribuição, em termos de número de indivíduos e biomassa, de cada espécie para a ictiofauna local como um todo; 2) documentação fotográfica de espécimes representativos de cada espécie coletada com sua coloração natural; 3) descrição de cada ambiente coletado, com ilustrações fotográficas coloridas, e seus principais parâmetros bióticos e abióticos. No total foram coletados 3.070 exemplares, pertencentes a seis ordens, 18 famílias, 44 gêneros e 64 espécies, com biomassa total de 14,3 kg. Das espécies coletadas, aproximadamente 50% pertencem a ordem Characiformes, 26,5% a Siluriformes, 11% a Perciformes, 6% a Gymnotiformes, 5% a Cyprinodontiformes e 1,5% a Synbranchiformes. As espécies mais abundantes em termos de número de indivíduos foram Astyanax altiparanae (17,4%) e Hypostomus ancistroides (9%); aquelas com maior biomassa foram A. altiparanae (35%) e Geophagus brasiliensis (9%). em termos de abundância e biomassa por família, a composição da fauna de peixes estudada indica a predominância expressiva de Characidae, seguida por Loricariidae e Cichlidae. Dentre os trechos amostrados, o trecho SG6 (26 espécies) e o PG4 (três espécies), apresentaram a maior e a menor riqueza em espécies, respectivamente, coincidindo com os valores obtidos para o índice de diversidade específica de Shannon-Wiener (H'= 1,08 e 0,26, respectivamente). A riqueza média encontrada foi de 12 espécies por trecho de riacho. Na estimativa de riqueza por extrapolação para o conjunto total de riachos amostrados na bacia do Rio Grande, obtivemos um valor de 93 espécies (erro padrão igual a três) indicando ser necessário um esforço amostral adicional moderado para atingir a assíntota da curva. Das 64 espécies coletadas, quatro (aproximadamente 6% do total) são seguramente novas, sete (aproximadamente 11% do total) possuem status taxonômico ainda indefinido, enquanto outras duas (aproximadamente 3% do total) são espécies certamente introduzidas. Analisando a estrutura trófica e espacial da ictiofauna estudada as 10 espécies numericamente dominantes nos riachos amostrados dividem-se, com base em dados de literatura, em ordem decrescente de importância numérica, em cinco guildas: onívoros nectônicos; invertívoros bentônicos; perifitívoros; algívoros e onívoros bentônicos. Uma chave de identificação para todas as espécies de peixes coletadas durante este estudo é fornecida ao final deste trabalho.

Population ecology of the planktonic shrimp Lucifer faxoni Borradaile, 1915 (Crustacea, Sergestoidea, Luciferidae) of the southeastern coast of Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Effects of daily changes in environmental factors on the abundance and richness of Odonata

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Abundance, habitat use and diet of Callicebus nigrifrons Spix (Primates, Pitheciidae) in Cantareira State Park, São Paulo, Brazil

Entre abril de 2005 e maio de 2006, através de censos seguindo os pressupostos da metodologia de transecção linear, foram estimadas a densidade populacional e abundância de Callicebus nigrifrons Spix, 1823 (Pitheciidae) no Parque Estadual da Cantareira, Estado de São Paulo, Sudeste do Brasil (23°23'42S, 46°35'27W). Com um esforço amostral de 275,8 km de censos, os sauás foram a segunda espécie de primata mais abundante, apresentando um índice de abundância de 1,4 grupos para cada 10 km percorridos e uma estimativa de densidade de 12,21 ind./km² (variando de 8,45 a 17,63 ind./km²). A coleta de dados auxiliares durante os censos possibilitou a verificação da dieta e uso do hábitat pelos grupos de Callicebus, e os resultados evidenciaram uma relativa adaptabilidade à ambientes perturbados.

Variabilidade espacial de atributos químicos em latossolo e argissolos

O trabalho teve como objetivo caracterizar a variabilidade espacial de atributos químicos de Latossolos e Argissolos, sob cultivo de cana-de-açúcar em áreas com variações na forma do relevo. No presente estudo utilizou-se duas áreas, sendo uma em Latossolo em pedoforma convexa (158ha) e a outra em Argissolo na pedoforma linear (172ha). Foi coletada amostra de solo em malha na profundidade de 0,00-0,50m, realizando-se análise química de cada ponto amostrado. Os maiores coeficientes de variação e alcances foram observados na pedoforma convexa (Latossolo). Portanto, o Latossolo inserido na pedoforma convexa apresentou maior variabilidade espacial para os atributos químicos em relação ao Argissolo na pedoforma linear. O latossolo inserido pedoforma convexa necessita de maior número de pontos de coleta por apresentar maior variabilidade espacial. Recomenda-se que o intervalo de amostragem seja igual ao alcance da dependência espacial, para associar menor esforço de amostragem com maior representatividade.

Spiroplasma in Drosophila melanogaster Populations: Prevalence, Male-Killing, Molecular Identification, and No Association with Wolbachia

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)