In vitro cumulative gas production techniques: History, methodological considerations and challenges

Methodology used to measure in vitro gas production is reviewed to determine impacts of sources of variation on resultant gas production profiles (GPP). Current methods include measurement of gas production at constant pressure (e.g., use of gas tight syringes), a system that is inexpensive, but may be less sensitive than others thereby affecting its suitability in some situations. Automated systems that measure gas production at constant volume allow pressure to accumulate in the bottle, which is recorded at different times to produce a GPP, and may result in sufficiently high pressure that solubility of evolved gases in the medium is affected, thereby resulting in a recorded volume of gas that is lower than that predicted from stoichiometric calculations. Several other methods measure gas production at constant pressure and volume with either pressure transducers or sensors, and these may be manual, semi-automated or fully automated in operation. In these systems, gas is released as pressure increases, and vented gas is recorded. Agitating the medium does not consistently produce more gas with automated systems, and little or no effect of agitation was observed with manual systems. The apparatus affects GPP, but mathematical manipulation may enable effects of apparatus to be removed. The amount of substrate affects the volume of gas produced, but not rate of gas production, provided there is sufficient buffering capacity in the medium. Systems that use a very small amount of substrate are prone to experimental error in sample weighing. Effect of sample preparation on GPP has been found to be important, but further research is required to determine the optimum preparation that mimics animal chewing. Inoculum is the single largest source of variation in measuring GPP, as rumen fluid is variable and sampling schedules, diets fed to donor animals and ratios of rumen fluid/medium must be selected such that microbial activity is sufficiently high that it does not affect rate and extent of fermentation. Species of donor animal may also cause differences in GPP. End point measures can be mathematically manipulated to account for species differences, but rates of fermentation are not related. Other sources of inocula that have been used include caecal fluid (primarily for investigating hindgut fermentation in monogastrics), effluent from simulated rumen fermentation (e.g., 'Rusitec', which was as variable as rumen fluid), faeces, and frozen or freeze-dried rumen fluid (which were both less active than fresh rumen fluid). Use of mixtures of cell-free enzymes, or pure cultures of bacteria, may be a way of increasing GPP reproducibility, while reducing reliance on surgically modified animals. However, more research is required to develop these inocula. A number of media have been developed which buffer the incubation and provide relevant micro-nutrients to the microorganisms. To date, little research has been completed on relationships between the composition of the medium and measured GPP. However, comparing GPP from media either rich in N or N-free, allows assessment of contributions of N containing compounds in the sample. (c) 2005 Published by Elsevier B.V.

Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit

Phenotypic and molecular genetic studies were performed on an unknown facultative anaerobic, catalase-negative, non-spore-forming, rod-shaped bacterium isolated from a pig manure storage pit. The unknown bacterium was nutritionally fastidious with growth enhanced by the addition of rumen fluid and was phenotypically initially identified as an Eubacterium species. Comparative 16S rRNA gene sequencing studies, however, revealed that the unknown bacterium was phylogenetically distant from Eubacterium limosum (the type species of the genus Eubacterium) and related organisms. Phylogenetically, the unknown species displayed a close association with an uncultured organism from human subgingival plaque and formed an unknown sub-line within a cluster of organisms which includes Alloioccoccus otitis, Alkalibacterium olivoapovliticus, Allofustis seminis, Dolosigranulum pigrum, and related organisms, within the low mol% G + C Gram-positive bacteria. Sequence divergence values of > 8% with all known taxonomically recognised taxa, however, clearly indicates the novel bacterium represents a hitherto unknown genus. Based on both phenotypic and phylogenetic considerations, it is proposed that the unknown bacterium from pig manure be classified in a new genus and species, as Atopostipes suicloacale gen. nov., sp. nov. The type strain of Atopostipes suicloacale is PPC79(T) = NRRL 23919(T) = DSM 15692(T). Crown Copyright (C) 2004 Published by Elsevier Ltd. All rights reserved.

The effect of condensed tannins in fresh sainfoin (Onobrychis viciifolia) on in vivo and in situ digestion in sheep

This study focused on effects of structure, content and biological activity of condensed tannins (CT) in leaves, stems and whole plant of sainfoin (Onobrychis viciifolia) on its in vivo and in situ digestive characteristics in sheep. Sainfoin was studied as fresh forage during the first vegetation cycle at two phenological stages (i.e., end of flowering and green seeds) and during the second vegetation cycle (i.e., start of flowering). The feeding experiment used 12 sheep; with six dosed, through the rumen cannula, with polyethylene glycol (PEG) to neutralise CT effects. Organic matter digestibility (OMD), total tract N disappearance and N balance were measured in sheep fed the whole plant. The residues of dry matter (DM) and N from nylon bags suspended in the rumen were determined on leaves and stems. Intestinal digestibility was measured using other, intestinally fistulated sheep. PEG addition and vegetation cycle increased total tract N digestibility (P<0.001) but PEG affected OMD only at the end of flowering. PEG inactivated the CT and increased urinary N excretion (P<0.05) but this was offset by lower faecal N excretion (P<0.001). Feeding sainfoin can be used to alter the form of excreted N (i.e., urine vs faeces) and thus potentially reduce environmental N pollution without affecting body N retention. Kinetic studies of total N, ammonia N (NH3-N) and volatile fatty acids (VFA) in rumen fluid were made before and 1.5, 3 and 6 h after feeding. Sainfoin CT decreased rumen fluid soluble N (P<0.05) and NH3-N (P<0.01). Ruminal N disappearance (DisN) of leaves or stems was lower in the presence of active CT compared to PEG-inactivated CT (P<0.001) for both vegetation cycles. PEG also increased intestinal digestibility (P<0.05) of leaves and stems. Leaves had lower ruminal DisN, but higher N disappearing from intestine than stems. The biological activity and content of CT in the whole plant decreased as phenological stage increased. Prodelphinidin:procyanidin (PD:PC) ratios of leaves varied with vegetation cycle and phenological stage. The molecular size of CT in the whole plant, as indicated by their mean degree of polymerisation (mDP), was lowest at the start of flowering and coincided with the higher biological activity and content of CT.

Impact of variation in structure of condensed tannins from sainfoin (Onobrychis viciifolia) on in vitro ruminal methan production and fermentation characteristics

Our study investigated the effects of condensed tannins (CT) on rumen in vitro methane (CH4) production and fermentation characteristics by incubating lucerne in buffered rumen fluid in combination with different CT extracts at 0 (control), 40, 80 and 120 g CT/kg of substrate DM. Condensed tannins were extracted from four sainfoin accessions: Rees ‘A’, CPI63763, Cotswold Common and CPI63767. Gas production (GP) was measured using a fully automated GP apparatus with CH4 measured at distinct time points. Condensed tannins differed substantially in terms of polymer size and varied from 13 (Rees ‘A’) to 73 (CPI63767) mean degree of polymerization, but had relatively similar characteristics in terms of CT content, procyanidin: prodelphinidin (PC: PD) and cis:trans ratios. Compared to control, addition of CT from CPI63767 and CPI63763 at 80 and 120 g CT/kg of substrate DM reduced CH4 by 43% and 65%, and by 23% and 57%, respectively, after 24-h incubation. Similarly, CT from Rees ‘A’ and Cotswold Common reduced CH4 by 26% and 46%, and by 28% and 46% respectively. Addition of increasing level of CT linearly reduced the maximum rates of GP and CH4 production, and the estimated in vitro organic matter digestibility. There was a negative linear and quadratic (p < 0.01) relation between CT concentration and total volatile fatty acid (VFA) production. Inclusion of 80 and 120 g CT/kg of substrate DM reduced (p < 0.001) branched-chain VFA production and acetate: propionate ratio and was lowest for CPI63767. A decrease in proteolytic activity as indirectly shown by a change in VFA composition favouring a shift towards propionate and reduction in branched-chain VFA production varied with type of CT and was highest for CPI63767. In conclusion, these results suggest that tannin polymer size is an important factor affecting in vitro CH4 production which may be linked to the CT interaction with dietary substrate or microbial cells.

Structural features of condensed tannins affect in vitro ruminal methane production and fermentation characteristics

An in vitro study was conducted to investigate the effects of condensed tannins (CT) structural properties, i.e. average polymer size (or mean degree of polymerization); percentage of cis flavan-3-ols and percentage of prodelphinidins in CT extracts on methane production (CH4) and fermentation characteristics. CT were extracted from eight plants in order to obtain different CT types: black currant leaves, goat willow leaves, goat willow twigs, pine bark, red currant leaves, sainfoin plants, weeping willow catkins and white clover flowers. They were analysed for CT content and CT composition by thiolytic degradation, followed by HPLC analysis. Grass silage was used as a control substrate. Condensed tannins were added to the substrate at a concentration of 40 g/kg, with or without polyethylene glycol (+ or −PEG 6000 treatment) to inactivate tannins, and then incubated for 72 h in mixed buffered rumen fluid from three different lactating dairy cows per run. Total cumulative gas production (GP) was measured by an automated gas production system. During the incubation, 12 gas samples (10 μl) were collected from each bottle headspace at 0, 2, 4, 6, 8, 12, 24, 30, 36, 48, 56 and 72 h of incubation and analyzed for CH4. A modified Michaelis–Menten model was fitted to the CH4 concentration patterns and model estimates were used to calculate total cumulative CH4 production (GPCH4). Total cumulative gas production and GPCH4 curves were fitted using biphasic and monophasic modified Michaelis-Menten models, respectively. Addition of PEG increased GP, GPCH4, and CH4 concentration compared to the −PEG treatment. All CT types reduced GPCH4 and CH4 concentration. All CT increased the half time of GP and GPCH4. Moreover, all CT decreased the maximum rate of fermentation for GPCH4 and rate of substrate degradation. The correlation between CT structure and GPCH4 and fermentation characteristics showed that the proportion of prodelphinidins within CT had the largest effect on fermentation characteristics, followed by average 27 polymer size and percentage of cis-flavan-3-ols.

Production of fibrolytic enzymes by Aspergillus japonicus C03 using agro-industrial residues with potential application as additives in animal feed

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Acidez total titulável, pH e tempo de redução do azul de metileno no fluido ruminal de caprinos mantidos em pastagens artificiais, exclusiva de gramíneas, ou em caatinga

O objetivo deste trabalho foi o de determinar a concentração hidrogeniônica (pH), acidez total titulável e tempo de redução do azul de metileno no fluido ruminal de caprinos com ou sem raça definida, mantidos em pastagens artificiais, exclusivas de gramíneas, ou em caatinga, durante as épocas chuvosa e seca do ano. O delineamento experimental foi inteiramente casualizado, sendo analisado em esquema fatorial 2³ (animais com e sem raça definida, pastagens artificiais e em caatinga, épocas chuvosa e seca do ano). O tipo de pastagem influenciou significativamente (p < 0,05) os valores encontrados para acidez total titulável. em relação ao pH, o tipo de pastagem e época do ano foram significativamente (p < 0,05) os fatores mais incisivos. A atividade microbiana, avaliada através dos parâmetros estudados, foi mais intensa na época das águas e na caatinga em relação à da seca e pastagens artificiais, respectivamente. Na avaliação dos resultados desses testes, deve-se sempre levar em consideração principalmente a época do ano e o tipo de pastagem, sem, no entanto, desprezar o fator raça.

Estádio de desenvolvimento do milho. 3. Avaliação de silagens por intermédio de parâmetros de fermentação ruminal

The objective of this experiment was to analyze the rumen fermentation of silages made from corn harvested at milk stage (MS), milk early dough stage (MEDS), medium dough stage (MDS) and semi-hard dough stage (SHDS). Rumen fluid was collected from sheep by esophageal tube at 0, 1, 3 and 6 hours after feeding. There were no differences among silages for ammonia nitrogen (NH3-N) and methylene blue reduction time (MBRT). Only the MS and SHDS silages differed in rumen pH (6.82 and 6.53, respectively). Differences in total rumen VFA and acetic acid concentrations (mmoles/L) were observed among stages, but not between MS (36.40 and 22.13) and MEDS (42.49 and 25.73), nor between MDS (64.52 and 40.34 respectively) and SHDS (64.09 and 43.61, respectively). The periods of 1 and 3 hours after feeding showed the smallest pH values (6.47 and 6.63), the highest NH3-N concentrations (9.75 and 10.56 mg/dL) and the highest concentrations of total VFA, and acetic and propionic acids (60.33, 37.05 and 16.73; 59.40, 35.28 and 16.84 mmoles/L, respectively). On the whole, the MDS and SHDS silages showed the best rumen fermentation patterns based on pH and total and individual VFA values.

Aditivos na ensilagem do capim-elefante. IV. Fermentação ruminal em ovinos

The ruminai fermentation patterns of sheep fed elephant grass (Pennisetum purpureum Schum.) silage enriched with ground ear corn with husks, wheat bran and saccharin in the levels 0, 8, 16 and 24% dry weight of additive/wet weight of green chop was evaluated. A split-plot randomized block design was used. The plots were the additives and their levels and the sub-plots the time of rumen fluid collection (0, 1, 3, 6, 9, 12 and 24 h after feeding). During the collection period, the sheep were fed 80% of the observed voluntary feed intake of the previous phase. For all additive types and levels used in preparing the silages, high levels of total volatile fat acids were observed, with predominance of the acetic acid. The silages having ground ear corn with husks as additive showed, in the ruminai fluid, ammonia production levels below the recommended for maximum microbial protein synthesis. However, silages with saccharin or wheat bran presented a good ammoniacal-N availability. In the ruminal fluid of the sheep fed ground ear corn with husks or wheat bran the molar proportion of butyric acid was increased and that of acetic acid and pH were decreased, as the levels of the additives in the silage increased.

Fezes equina como fonte de inóculo na obtenção de indicadores indigestíveis para estimar a digestibilidade em equinos

Four castrated horses were utilized in randomized blocks experimental design. The objective was to study the in vitro acquirement of indigestible fiber, neutral detergent fiber (NDFi) and acid detergent fiber (ADFi), using as inoculum source rumen fluid (RF) or horse feces (HF), to estimate the nutrient digestibility (ND) in horses. Treatments consisted of direct method by total feces collection (TC) and indirect method either by the use of NDFi or ADF by the use of LR or HF as inocula source. The first essay was done with horses fed coast-cross hay exclusively, while for the essay two, the horses were fed of 70% of coast-cross hay and 30% corn grain. For the essay 1, ADFi-HF presented the best marker recuperation rate (RR) (103.67%), being similar to control (TC), while NDFi-RF and ADFi-RF resulted in lower RR (P<0.05), 83.43 and 88.28%, respectively. The ND was adequately estimated by NDFi-HF and ADFi-HF. On the second essay there were no significant effects of the marker type, as well as for the indigestible marker acquirement method, for the marker RR (average value of 101%). The ND was adequately predicted by the ADFi obtained for both innocula source and NDFi obtained by the use of HF as inoculum, for horses fed a mixed diet. It can be concluded that horse feces may be used as inoculum source for the acquirement of NDFi and ADFi in vitro for digestibility determination on horses fed coastcross hay exclusively, as well as for horses fed a mixed diet.

Prevalência de Salmonella spp. em bovinos provenientes de sistemas de engorda extensiva e confinamento

Pós-graduação em Medicina Veterinária - FMVZ

Fotossensibilização em ovinos associada à ingestão de Brachiaria brizantha no estado do Pará

Foram estudados dois surtos e realizado um experimento de fotossensibilização associada à ingestão por Brachiaria brizantha em ovinos mestiços de Santa Inês e Dorper, com idade variando de dois a três meses, em uma fazenda no município de Santa Luzia do Pará. Esses animais foram mantidos desde o nascimento até aproximadamente dois meses de idade, em apriscos suspensos do chão, recebendo capim-elefante roxo (Pennisetum purpureum cv. roxo), concentrado, sal mineral e água ad libitum. Após esse período foram introduzidos em um piquete de B. brizantha. Na ocasião dos surtos e do experimento a fazenda foi visitada para observação dos dados epidemiológicos, avaliação clínica dos animais, colheita de amostras de sangue para dosagem de GGT, AST, BD, BI, BT, ureia e creatinina e colheita de pastagem para pesquisa de Pithomyces chartarum e saponinas. Também foi realizada necropsia com colheita de material para estudo histológico. O surto 01 ocorreu na época de escassez de chuva, com taxa de morbidade e letalidade de 43,4% e 81,6%, respectivamente. O surto 02 aconteceu no início da época chuvosa, com taxas de morbidade e letalidade de 16,3% e 76,9%, respectivamente. Em ambos os surtos o capim encontrava-se com massa residual reduzida e senescente. Dos 50 animais do experimento, 10 receberam 200ml de fluido ruminal retirado de ovelhas mães do mesmo lote, a primeira administração foi feita um dia antes da introdução desses animais na pastagem, e mais duas subsequentes com intervalo de uma semana. Após 15 dias de pastejo, os animais começaram a apresentar inquietação, procura por sombra, edema nas orelhas, mucosas amareladas, apatia, anorexia e desprendimento da pele seguido por formação de crostas em algumas áreas do corpo. Tanto os animais dos surtos quanto do experimento apresentaram aumento nos níveis de GGT, AST, BD, BI, BT, ureia e creatinina. Os valores de ureia e GGT dos animais que receberam fluido ruminal e dos que não receberam foram semelhantes, já os valores de creatinina, AST e bilirrubinas foram menores nos animais que receberam fluido ruminal em comparação aos que não receberam. Foram determinados dois tipos de saponinas nas amostras de B. brizantha dos surtos e do experimento, a metilprotodioscina e a protodioscina. O nível de saponina no surto 01 e 02 foi 0,92% e 0,88%, respectivamente. Os níveis de saponinas no experimento variaram de 1,13% a 1,62%. A quantidade de Pithomyces chartarum, tanto nos surtos quanto no experimento, foi insignificante. Na necropsia foi verificada icterícia generalizada, fígado com consistência aumentada de coloração amarelada e com padrão lobular acentuado. Nos rins foi observada coloração amarelo-esverdeado e aumento de tamanho. As alterações histológicas ocorreram principalmente no fígado e consistiram de leve proliferação das vias biliares nos espaços porta, presença de hepatócitos binucleados, presença de macrófagos espumosos, necrose incipiente de hepatócitos isolados, colangite, presença de cristais em macrófagos e hepatócitos.

Fotossensibilização em ovinos associada à ingestão de Brachiaria brizantha no estado do Pará

Foram estudados dois surtos e realizado um experimento de fotossensibilização associada à ingestão por Brachiaria brizantha em ovinos mestiços de Santa Inês e Dorper, com idade variando de dois a três meses, em uma fazenda no município de Santa Luzia do Pará. Esses animais foram mantidos desde o nascimento até aproximadamente dois meses de idade, em apriscos suspensos do chão, recebendo capim-elefante roxo (Pennisetum purpureum) cv. roxo, concentrado, sal mineral e água ad libitum. Após esse período foram introduzidos em um piquete de B. brizantha. Na ocasião dos surtos e do experimento a fazenda foi visitada para observação dos dados epidemiológicos, avaliação clínica dos animais, colheita de amostras de sangue para dosagem de GGT, AST, BD, BI, BT, uréia e creatinina e colheita de pastagem para pesquisa de Pithomyces chartarum e saponinas. Também foi realizada necropsia com colheita de material para estudo histológico. O surto 01 ocorreu na época de escassez de chuva, com taxa de morbidade e letalidade de 43,4% e 81,6%, respectivamente. O surto 02 aconteceu no início da época chuvosa, com taxas de morbidade e letalidade de 16,3% e 76,9%, respectivamente. Em ambos os surtos o capim encontrava-se com massa residual reduzida e senescente. Dos 50 animais do experimento, 10 receberam 200 ml de fluido ruminal retirado de ovelhas mães do mesmo lote, a primeira administração foi feita um dia antes da introdução desses animais na pastagem, e mais duas subsequentes com intervalo de uma semana. Após 15 dias de pastejo, os animais começaram a apresentar inquietação, procura por sombra, edema nas orelhas, mucosas amareladas, apatia, anorexia e desprendimento da pele seguido por formação de crostas em algumas áreas do corpo. Tanto os animais dos surtos quanto do experimento apresentaram aumento nos níveis de GGT, AST, BD, BI, BT, uréia e creatinina. Os valores de uréia e GGT dos animais que receberam fluido ruminal e dos que não receberam foram semelhantes, já os valores de creatinina, AST e bilirrubinas foram menores nos animais que receberam fluido ruminal em comparação aos que não receberam. Foram determinados dois tipos de saponinas nas amostras de B. brizantha dos surtos e do experimento, a metilprotodioscina e a protodioscina. O nível de saponina no surto 01 e 02 foi 0,92% e 0,88%, respectivamente. Os níveis de saponinas no experimento variaram de 1,13% a 1,62%. A quantidade de Pithomyces chartarum, tanto nos surtos quanto no experimento, foi insignificante. Na necropsia foi verificada icterícia generalizada, fígado com consistência aumentada de coloração amarelada com padrão lobular acentuado e degeneração gordurosa. Nos rins foi observada coloração amarelo-esverdeado e aumento de tamanho. As alterações histológicas ocorreram principalmente no fígado e podem ser descritas como leve proliferação das vias biliares nos espaços porta, presença de hepatócitos binucleados, presença de macrófagos espumosos, necrose incipiente de hepatócitos isolados, colangite, presença de cristais em macrófagos e hepatócitos.

Produção in vitro de metano, dióxido de carbono e oxigênio utilizando líquido ruminal de bovinos alimentados com diferentes rações

Pós-graduação em Zootecnia - FCAV

Avaliação das características do líquido ruminal, hemogasometria, atividade pedométrica e diagnóstico de laminite subclínica em vacas leiteiras

The objectives of this study were to evaluate the characteristics of ruminal fluid, blood gas analysis, pedometer activity and suclinical laminitis occurrence, through the presence of secondary foot diseases in high production dairy cows, from a commercial herd. 200 Holstein cows originating from the same farm, located in Araçatuba/SP, Brazil, were divided into four groups, which are established from the daily milk production. Initially clinical examination of the cows was procedure, followed by sampling of rumen fluid, by esophageal tube. Fluid was evaluated for pH, color, odor, consistency, sedimentation, flotation and methylene blue reduction test. Venous blood samples were also collected for blood gas analysis, in addition to collecting data from pedometrics (number of steps) and daily milk production. Data were tabulated and submitted to correlation analysis. No animal had reported changes in rumen pH. Non-acid base imbalance were found, since the values of blood pH, PCO2, TCO2, HCO3- and BE were normal during hemogasimetric analysis. The pedometric was effective as a screening method to cows with foot diseases. It demonstrated reduction in the number of steps due to pain, correlated with lower milk production. However, the identification of foot lesions was only possible through specific digital clinical examination. The occurrence of 49.5 % of herd foot problems was due to the risk factors present in the farm. The abrasive concrete and inadequate facilities, also associated with the possible occurrence of sub-acute ruminal acidosis, were observed as risk factors. However, sub-acute ruminal acidosis was undiagnosed by the methods used. The correlation between the values of ruminal pH, and blood gas analysis pedometrics showed efficient for the early diagnosis of foot diseases and also in establishing the etiology of these diseases. Subclinical laminitis occurred primarily in cow's herd, considering the multifactorial etiology of this disease, occurrence and distribution of foot diseases diagnosed.