Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human

By spliced alignment of human DNA and transcript sequence data we constructed a data set of transcript-confirmed exons and introns from 2793 genes, 796 of which (28%) were seen to have multiple isoforms. We find that over one-third of human exons can translate in more than one frame, and that this is highly correlated with G+C content. Introns containing adenosine at donor site position +3 (A3), rather than guanosine (G3), are more common in low G+C regions, while the converse is true in high G+C regions. These two classes of introns are shown to have distinct lengths, consensus sequences and correlations among splice signals, leading to the hypothesis that A3 donor sites are associated with exon definition, and G3 donor sites with intron definition. Minor classes of introns, including GC-AG, U12-type GT-AG, weak, and putative AG-dependant introns are identified and characterized. Cassette exons are more prevalent in low G+C regions, while exon isoforms are more prevalent in high G+C regions. Cassette exon events outnumber other alternative events, while exon isoform events involve truncation twice as often as extension, and occur at acceptor sites twice as often as at donor sites. Alternative splicing is usually associated with weak splice signals, and in a majority of cases, preserves the coding frame. The reported characteristics of constitutive and alternative splice signals, and the hypotheses offered regarding alternative splicing and genome organization, have important implications for experimental research into RNA processing. The 'AltExtron' data sets are available at http://www.bit.uq.edu.au/altExtron/ and http://www.ebi.ac.uk/similar tothanaraj/altExtron/.

Toxoplasmosis in Indo-Pacific humpbacked dolphins (Sousa chinensis), from Queensland

Objective To describe the clinical signs, gross pathology, serology, bacteriology, histopathology, electron microscopy and immunohistochemistry findings associated with toxoplasmosis in four Indo-Pacific humpbacked dolphins (Sousa chinensis) that stranded in Queensland in 2000 and 2001. Design Clinical assessment, gross necropsy, and laboratory examinations. Procedure Necropsies were performed on four S chinensis to determine cause of death. Laboratory tests including serology, bacteriology, histopathology and transmission electron microscopy were done on the four dolphins. Immunohistochemistry was done on the brain, heart, liver, lung, spleen and adrenal gland from various dolphins to detect Toxoplasma gondii antigens. Results Necropsies showed all of four S chinensis that stranded in Queensland in 2000 and 2001 had evidence of predatory shark attack and three were extremely emaciated. Histopathological examinations showed all four dolphins had toxoplasmosis with tissue cysts resembling T gondii in the brain. Tachyzoite stages of T gondii were detected in the lungs, heart, liver, spleen and adrenal gland, variously of all four dolphins. Electron microscopy studies and immunohistochemistry confirmed the tissues cysts were those of T gondii. All four dolphins also had intercurrent disease including pneumonia, three had peritonitis and one had pancreatitis. Conclusion Four S chinensis necropsied in Queensland in 2000 and 2001 were found to be infected with toxoplasmosis. It is uncertain how these dolphins became infected and further studies are needed to determine how S chinensis acquire toxoplasmosis. All four dolphins stranded after periods of heavy rainfall, and coastal freshwater runoff may be a risk factor for T gondii infection in S chinensis. This disease should be of concern to wildlife managers since S chinensis is a rare species and its numbers appear to be declining.

Mortalidade por pneumonia em crianças menores de cinco anos de idade em localidade do Estado de Minas Gerais (Brasil), 1979-1985

Foi realizado um estudo descritivo, a partir das informações provenientes de órgãos oficiais e dos atestados de óbito, sobre a mortalidade por pneumonia entre os anos de 1979 e 1985 no Município de Belo Horizonte, MG (Brasil). Os dados revelaram que a taxa de mortalidade chegou a ser 35 vezes superior àquela dos países desenvolvidos e que a redução anual da mortalidade no período em questão foi 2/3 daquela obtida nesses mesmos países. Em 1985, estas disparidades também ocorreram dentro do próprio município pois, nas zonas de maior renda familiar média mensal as taxas foram menos elevadas, embora estatisticamente não significativas. (Z = 1,2, p > 0,05).

Fatores de risco para morte por pneumonia em menores de um ano em uma região metropolitana do sudeste do Brasil: um estudo tipo caso-controle

Através de um estudo tipo caso-controle, foi comparada uma amostra de óbitos pós-neonatais por pneumonia ocorridos na Região Metropolitana do Rio de Janeiro, Brasil (1986-1987) e controles sadios, moradores na vizinhança. Os fatores de risco investigados foram variáveis relacionadas à história gestacional da mãe e ao nascimento da criança, às condições sociais da família e à utilização de serviços de saúde. Na primeira etapa de análise, através de um modelo de regressão logística univariada, foram estimados os coeficientes de cada variável independente, o risco relativo e seus limites de confiança. O peso ao nascer e a idade do desmame mostraram-se das mais fortemente associadas com a variável dependente. Na segunda etapa, foi feito o ajuste pelo modelo de regressão logística múltipla e somente 4 variáveis permaneceram estatisticamente associadas com a mortalidade: idade do desmame, peso ao nascer, número de moradores da casa e aplicação da vacina BCG. Conclui-se que a mortalidade por pneumonia em menores de um ano está fortemente associada às condições sociais da família, em particular da mãe.

Fatores prognósticos de letalidade hospitalar por diarréia ou pneumonia em menores de um ano de idade: estudo de caso e controle

Estudou-se a letalidade hospitalar devido à diarréia ou pneumonia em menores de um ano de idade na Região Metropolitana do Rio de Janeiro cujo óbito ocorreu entre abril/86 e maio/87. Foram investigados possíveis fatores prognósticos de letalidade hospitalar em relação a condições socioeconômicas, biológicas e amamentação aos 30 dias de vida. Foi utilizada metodologia de caso-controle, sendo casos as crianças internadas por diarréia ou por pneumonia que morreram, e controles aquelas que sobreviveram. Referências são feitas aos fenômenos de causalidade reversa e "overmatching" como possíveis viéses neste tipo de estudo. Razão de produtos cruzados (RPC) foi utilizada para estimar os riscos relativos, através de regressão logística não condicional. Os principais fatores prognósticos encontrados foram prematuridade, baixo peso ao nascer, mau estado geral e déficit peso/idade na hospitalização. Nas crianças com pneumonia a duração do aleitamento materno esteve associado com a letalidade (RPC=2,0). As condições biológicas evidenciaram-se como os principais fatores prognósticos de letalidade hospitalar por diarréia ou pneumonia.

Hospitalização por pneumonia: influência de fatores socioeconômicos e gestacionais em uma coorte de crianças no Sul do Brasil

OBJETIVO: Investigar a influência de fatores socioeconômicos e gestacionais sobre a hospitalização por pneumonia no período pós-neonatal. MATERIAL E MÉTODO: Longitudinal. Crianças com idade entre 28 e 364 dias, nascidas na cidade de Pelotas, RS (Brasil), em 1993. A definição de caso foi a permanência em ambiente hospitalar por um período igual ou superior a 24 horas em conseqüência de pneumonia. Foi aplicado delineamento longitudinal. RESULTADOS: Dentre as 5.304 crianças da coorte, 152 (2,9%) foram hospitalizadas por pneumonia no período. O valor preditivo positivo do diagnóstico clínico comparado com o radiológico alcançou 76%. A análise através de regressão logística mostrou que a classe social e a escolaridade materna estiveram forte e inversamente associadas à admissão hospitalar. Filhos de mães adolescentes tiveram risco duplicado à internação; paridade igual ou superior a três representou risco 2,8 vezes maior em relação às mães primíparas; ganho de peso inferior a 10 kg durante a gestação implicou risco cerca de 40% maior à hospitalização. CONCLUSÕES: A classe social e a escolaridade materna foram os principais determinantes da hospitalização. Idade e paridade materna e o ganho de peso durante a gestação foram também fatores de risco importantes.

Susceptibility of asthmatic children to respiratory infection

OBJECTIVE: A case-control study of patients with pneumonia was conducted to investigate whether wheezing diseases could be a risk factor. METHODS: A random sample was taken from a general university hospital in S. Paulo City between March and August 1994 comprising 51 cases of pneumonia paired by age and sex to 51 non-respiratory controls and 51 healthy controls. Data collection was carried out by two senior paediatricians. Diagnoses of pneumonia and presence of wheezing disease were independently established by each paediatrician for both cases and controls. Pneumonia was radiologically confirmed and repeatability of information on wheezing diseases was measured. Logistic regression analysis was used to identify risk factors. RESULTS: Wheezing diseases, interpreted as proxies of asthma, were found to be an important risk factor for pneumonia with an odds ratio of 7.07 (95%CI= 2.34-21.36), when the effects of bedroom crowding (odds ratio = 1.49 per person, 95%CI= 0.95-2.32) and of low family income (odds ratio = 5.59 against high family income, 95%CI= 1.38-22.63) were controlled. The risk of pneumonia attributable to wheezing diseases is tentatively calculated at 51.42%. CONCLUSION: It is concluded that at practice level asthmatics should deserve proper surveillance for infection and that at public health level pneumonia incidence could be reduced if current World Health Organisation's guidelines were reviewed as to include comprehensive care for this illness.

Poluição atmosférica e atendimentos por pneumonia e gripe em São Paulo, Brasil

OBJETIVO: Investigar os efeitos causados pela poluição atmosférica na morbidade por pneumonia e por gripe em idosos entre 1996 e 1998. MÉTODOS: Foram obtidos dados diários de atendimentos por pneumonia e gripe para idosos em pronto-socorro médico de um hospital-escola de referência no Município de São Paulo, SP, Brasil. Os níveis diários de CO, O3, SO2, NO2 e PM10 foram obtidos na Companhia de Tecnologia de Saneamento Ambiental, e os dados diários de temperatura e umidade relativa do ar foram obtidos no Instituto Astronômico e Geofísico da USP. Para verificar a relação existente entre pneumonia e gripe e poluição atmosférica, utilizou-se o modelo aditivo generalizado de regressão de Poisson, tendo como variável dependente o número diário de atendimentos por pneumonia e gripe e como variáveis independentes as concentrações médias diárias dos poluentes atmosféricos. A análise foi ajustada para sazonalidade de longa duração (número de dias transcorridos), sazonalidade de curta duração (dias da semana), temperatura mínima, umidade média, períodos de rodízio e os atendimentos por doenças não-respiratórias em idosos. RESULTADOS: O3 e SO2 estão diretamente associados à pneumonia e à gripe, independentemente das variáveis de controle. Porém, na análise conjunta, eles perdem sua significância estatística. Pôde-se observar que um aumento interquartil (25%-75%) para o O3 (38,80 mig/m³) e SO2 (15,05 mig/m³) levaram a um acréscimo de 8,07% e 14,51%, respectivamente, no número de atendimentos por pneumonia e gripe em idosos. CONCLUSÕES: Os resultados sugerem que a poluição atmosférica promove efeitos adversos para a saúde de idosos.

Pneumonia por Legionella pneumophila: relato do segundo caso brasileiro

Os autores relatam um caso de pneumonia por Legionella pneumophila, diagnosticado pela primeira vez em Porto Alegre, Rio Grande do Sul. A hipótese diagnóstica foi confirmada por imunofluorescência indireta nas amostras de soro do paciente enviadas ao C.D.C. (Atlanta — E.U.A.), com títulos de 1:128 na amostra da fase aguda e 1:512 na amostra da fase de convalescença.

Aerosolised pentamidine for Pneumocystis carinii pneumonia in patients with acquired immunodeficiency syndrome

The goal of this study was to evaluate inhaled pentamidine for the treatment of patients with mild and moderate Pneumocystis carinii pneumonitis. Eight adults with AIDS and pneumocystis pneumonia (4 with a first episode and 4 with a repeat pneumocystosis) received daily inhalations of aerosol pentamidine isethionate for 21 days. Six patients were treated with doses of 300 mg of pentamidine and the remaining 2 received 600 mg every day. In the 300 mg treatment group, 2 individuals showed discrete and transient neutropenia. However, both subjects that received 600 mg of aerosol pentamidine daily developed leukopenia. One of them had major toxicity (overall severe intolerance of 12.5%) that required drug discontinuation and did not allow any analysis of the treatment efficacy. Of the 7 evaluable patients, 6 (88%) completed the treatment successfuly. One subject of the 300 mg regimen experienced an early recurrence. In conclusion, inhaled pentamidine is an effective treatment for mild and moderate cases of P. carinii pneumonia. It is less toxic than standard anti-pneumocystis therapy and is suitable for outpatient use.

Etiology and severity of community acquired pneumonia in children from Uruguay: a 4-year study

The 4-year study (1987-1990) covered the major clinical-epidemiological characteristics of pneumonia in children as diagnosed at the emergency service of the Children's Hospital, as well as etiologies, and factors involved in the most severe cases. Etiology was determined in 47.7% of the 541 pneumonia cases, involving 283 pathogens of which 38.6% were viruses and 12.6% bacteria. Viral and mixed etiologies were more frequent in children under 12 months of age. Bacteria predominated in ages between 6 and 23 months. Among the viruses, respiratory syncytial virus predominated (66%). The bacterial pneumonias accounted for 12.2% of the recognized etiologies. The most important bacterial agents were S. pneumoniae (64%) and H. influenzae (19%). H. influenzae and mixed infections had a relevant participation during the 1988 season, pointing to annual variations in the relative participation of pathogens and its possible implication in severity of diseases. Correlation of severity and increased percentage of etiological diagnosis was assessed: patients with respiratory rates over 70 rpm, or pleural effusion and/or extensive pulmonary parenchyma compromise yielded higher positive laboratory results. Various individual and family risk factors were recognized when comparing pneumonia children with healthy controls.

Involvement of the central nervous system in dengue fever: three serologically confirmed cases from Fortaleza, Ceará, Brazil

Three cases of dengue fever involving the central nervous system (CNS) are reported. All occurred in 1994 during a dengue (DEN) epidemic caused by serotypes DEN-1 and DEN-2. The first case examined was a 17-year-old girl who complained of fever, nuchal rigidity and genital bleeding. Three blood samples were positive by anti-dengue IgM ELISA and showed hemagglutination-inhibition (HI) test titers ³ 1,280. The second case concerned a 86-year-old woman with fever, muscle and joint pains, altered consciousness, syncope, nuchal rigidity and meningismus. Her blood sample showed an HI titer of 1:320 for flaviviruses, and an IgM ELISA positive for dengue. The third case was a 67-year-old woman with fever, abnormal behaviour, seizures, tremor of extremities, thrombocytopenia, increased hematocrit and leukopenia. The patient suffered a typical case of dengue hemorrhagic fever with ensuing shock and a fatal outcome. A single blood sample showed HI antibodies of ³ 1,280 and an IgM ELISA positive for dengue. No virus could be isolated from any patient by inoculation of blood into C6/36 cells and suckling mice. No other agent of disease was encountered in the patient.

Hantavirus pulmonary syndrome in Brazil: clinical aspects of three new cases

Hantavirus pulmonary syndrome (HPS) has been recognized recently in Brazil, where 28 cases have been reported as of September 1999. We report here the clinical and laboratory findings of three cases whose diagnoses were confirmed serologically. All the patients were adults who presented a febrile illness with respiratory symptoms that progressed to respiratory failure that required artificial ventilation in two of them. Laboratory findings were most of the time consistent with those reported in the United States in patients infected with the Sin Nombre virus, and included elevated hematocrit and thrombocytopenia; presence of atypical lymphocytes was observed in one patient. The chest radiological findings observed in all the patients were bilateral, diffuse, reticulonodular infiltrates. Two patients died. Histopathological examination of the lungs of these patients revealed interstitial and alveolar edema, alveolar hemorrhage, and mild interstitial pneumonia characterized by infiltrate of immunoblasts and mononuclear cells. In the epidemiologic investigation of one of the cases, serologic (ELISA) tests were positive in 3 (25%) out of 12 individuals who shared the same environmental exposure. HPS should be included in the differential diagnosis of interstitial pneumonia progressing to acute respiratory failure.